Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.2e-127 459.9 236 100.0
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 6.4e-102 374.4 236 79.7
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 8.4e-102 374.0 236 79.2
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 1.4e-101 373.2 236 79.2
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 1.4e-101 373.2 236 78.4
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.9e-101 372.9 236 78.0
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 2.4e-101 372.5 236 76.3
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 3.2e-101 372.1 236 75.4
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 9.3e-101 370.5 236 77.5
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 3.5e-100 368.6 236 75.8
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 6.0e-100 367.9 235 77.9
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.3e-99 366.7 236 76.7
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 1.8e-99 366.3 236 77.1
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 3.0e-99 365.5 236 77.1
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 3.9e-99 365.2 236 77.5
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 2.5e-98 362.5 236 74.2
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 3.3e-98 362.1 236 75.0
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 4.3e-98 361.7 236 75.0
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 5.6e-98 361.3 236 75.4
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 7.4e-98 360.9 236 74.6
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 7.4e-98 360.9 236 76.7
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 1.3e-97 360.1 236 75.8
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 1.3e-97 360.1 236 75.0
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 4.8e-97 358.2 236 75.8
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 8.1e-97 357.5 236 75.8
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 8.1e-97 357.5 236 75.8
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 8.1e-97 357.5 236 75.8
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 1.4e-96 356.7 236 74.6
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 4.0e-96 355.1 236 73.7
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 6.9e-96 354.4 236 72.9
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 6.9e-96 354.4 236 74.2
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 9.0e-96 354.0 236 74.2
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 2.0e-95 352.8 236 73.7
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 2.6e-95 352.4 236 74.6
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 2.6e-95 352.4 258 69.4
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 3.4e-95 352.1 236 75.0
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 7.6e-95 350.9 236 72.9
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 1.3e-94 350.1 236 73.7
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 1.3e-94 350.1 238 71.4
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 1.7e-94 349.7 236 73.3
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 6.5e-94 347.8 236 72.5
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 8.4e-94 347.4 233 74.2
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 3.2e-93 345.5 241 72.2
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 5.5e-93 344.7 236 70.8
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 5.5e-93 344.7 236 70.8
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 7.1e-93 344.4 246 71.5
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 7.1e-93 344.4 246 71.5
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 1.6e-92 343.2 230 73.0
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 1.6e-92 343.2 236 72.9
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 1.6e-92 343.2 236 70.3
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 1.6e-92 343.2 236 69.5
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 2.7e-92 342.4 230 72.6
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 2.7e-92 342.4 230 72.6
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 4.6e-92 341.7 236 71.6
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 4.6e-92 341.7 236 70.3
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 4.6e-92 341.7 237 70.9
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 6.0e-92 341.3 230 72.2
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 7.9e-92 340.9 236 71.6
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 7.9e-92 340.9 236 71.6
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 1.0e-91 340.5 236 71.2
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.3e-91 340.1 236 71.2
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 1.3e-91 340.1 230 72.2
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.3e-91 340.1 236 70.8
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.8e-91 339.7 230 73.0
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 2.3e-91 339.3 230 72.2
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.9e-91 338.6 236 71.2
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 3.9e-91 338.6 238 69.7
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 5.1e-91 338.2 230 71.7
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 5.1e-91 338.2 238 69.7
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 6.7e-91 337.8 236 71.2
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 8.7e-91 337.4 244 69.7
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 8.7e-91 337.4 236 70.3
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 8.7e-91 337.4 236 71.2
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.5e-90 336.7 236 71.6
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 2.5e-90 335.9 234 71.4
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 5.7e-90 334.7 236 71.2
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 7.4e-90 334.3 236 68.6
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 9.6e-90 334.0 290 61.7
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 1.3e-89 333.6 236 70.3
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.6e-89 333.2 236 70.8
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 4.8e-89 331.6 236 69.9
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 1.1e-88 330.5 240 68.3
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.1e-88 330.5 236 70.3
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 1.8e-88 329.7 236 68.6
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 1.8e-88 329.7 236 68.2
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 1.2e-87 327.0 236 67.4
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 1.5e-87 326.6 247 65.2
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 2.0e-87 326.2 226 70.8
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 4.5e-87 325.1 232 66.4
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 7.6e-87 324.3 232 66.4
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 1.0e-86 323.9 236 65.7
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 1.0e-86 323.9 236 65.7
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.0e-86 323.9 236 66.1
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 1.7e-86 323.2 237 70.5
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 1.7e-86 323.2 236 65.7
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 1.7e-86 323.2 236 66.9
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 5.0e-86 321.6 236 64.4
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 5.0e-86 321.6 236 67.8
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 6.5e-86 321.2 236 65.3
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 6.5e-86 321.2 236 65.3
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 6.5e-86 321.2 239 66.9
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 3.2e-85 318.9 236 65.3
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 3.2e-85 318.9 226 70.8
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 5.5e-85 318.2 236 64.8
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 9.3e-85 317.4 241 66.0
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.5e-84 315.5 248 64.1
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.0e-83 313.9 236 64.0
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 6.7e-83 311.2 245 66.1
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 8.7e-83 310.8 235 65.5
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 1.5e-82 310.1 236 64.8
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 4.3e-82 308.5 207 72.9
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 5.7e-82 308.1 236 64.4
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 2.8e-81 305.8 204 71.1
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.7e-81 305.4 231 65.8
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.1e-80 303.9 236 63.1
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 6.9e-80 301.2 220 65.0
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 3.4e-79 298.9 325 52.0
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 1.0e-78 297.4 240 62.5
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 1.4e-77 293.5 309 51.1
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 3.2e-77 292.4 240 60.8
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 5.5e-77 291.6 201 72.6
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 3.6e-76 288.9 237 57.8
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 4.6e-76 288.5 198 73.2
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 4.6e-76 288.5 227 64.8
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 1.0e-75 287.3 236 63.1
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 8.8e-75 284.3 305 53.8
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.5e-74 283.5 304 53.6
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 3.3e-74 282.3 205 66.8
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 3.7e-73 278.9 237 59.9
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 7.7e-71 271.2 237 60.3
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 5.0e-62 241.9 215 57.2
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 8.5e-62 241.1 193 65.3
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 1.5e-61 240.4 219 59.4
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 3.2e-61 239.2 381 41.7
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 1.4e-59 233.8 173 63.6
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.7e-57 226.9 236 46.2
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 3.1e-56 222.6 239 44.8
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 1.5e-53 213.8 242 45.5
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 5.2e-51 205.3 206 50.0
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 5.2e-51 205.3 236 50.4
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 8.8e-51 204.5 143 70.6
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 2.8e-49 199.5 220 44.5
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 7.7e-47 191.4 115 79.1
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 3.4e-42 176.0 115 72.2
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 2.4e-40 169.9 189 45.5
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 7.7e-39 164.9 123 65.0
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.2e-28 131.0 79 87.3
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 2.2e-25 120.2 115 50.4
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 2.0e-18 97.1 107 38.3
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 5.8e-18 95.5 70 68.6
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 9.8e-18 94.7 54 85.2
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 1.1e-16 91.3 74 56.8
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 2.8e-12 76.6 72 54.2
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 2.3e-11 73.6 50 78.0
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 5.8e-10 68.9 92 43.5
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 4.9e-09 65.9 50 62.0
Gohir.A05G174100 Gossypium hirsutum HOM05D002234 ORTHO05D002254 1.1e-08 64.7 213 25.8
Gohir.D05G177100 Gossypium hirsutum HOM05D002234 ORTHO05D002254 1.1e-08 64.7 213 25.8
Gorai.009G182500 Gossypium raimondii HOM05D002234 ORTHO05D002254 1.1e-08 64.7 213 25.8
MSTRG.12171 Avicennia marina HOM05D002234 ORTHO05D002254 2.3e-06 57.0 203 26.6
CANSAT56G3737 Cannabis sativa HOM05D002234 ORTHO05D002254 2.3e-06 57.0 206 24.3
Migut.A01084 Erythranthe guttata HOM05D002234 ORTHO05D002254 2.3e-06 57.0 195 24.6
TAR375G0159 Trochodendron aralioides HOM05D002234 ORTHO05D002254 2.3e-06 57.0 202 26.2
COL.COLO4_31843 Corchorus olitorius HOM05D002234 ORTHO05D002254 3.0e-06 56.6 232 26.3
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 5.1e-06 55.8 145 29.7
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 5.1e-06 55.8 103 35.9
Duzib192G0327 Durio zibethinus HOM05D002234 ORTHO05D002254 5.1e-06 55.8 208 26.0
Phvul.006G145100 Phaseolus vulgaris HOM05D002234 ORTHO05D002254 5.1e-06 55.8 235 24.7
PRCOL_00001829 Prasinoderma coloniale HOM05D002234 ORTHO05D002254 5.1e-06 55.8 219 26.0
Manes.16G002400 Manihot esculenta HOM05D002234 ORTHO05D002254 6.6e-06 55.5 201 24.4
FAN14G4716 Fragaria x ananassa HOM05D004474 ORTHO05D210276 8.6e-06 55.1 41 61.0


User provided reference genes

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