Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.2e-120 435.6 224 100.0
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 8.1e-30 134.8 236 44.9
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.2e-28 131.0 203 46.3
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.5e-28 130.6 205 43.9
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 3.4e-28 129.4 184 47.8
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 2.2e-27 126.7 206 44.7
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 2.9e-27 126.3 202 43.6
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 3.8e-27 125.9 186 42.5
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 8.4e-27 124.8 194 42.8
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.9e-26 123.6 196 44.9
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 3.2e-26 122.9 195 43.1
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 4.2e-26 122.5 200 42.0
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 7.1e-26 121.7 201 44.3
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.1e-26 121.7 195 42.1
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 7.1e-26 121.7 180 42.8
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 9.3e-26 121.3 201 40.8
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.6e-25 120.6 151 51.0
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.6e-25 120.6 185 45.9
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 2.1e-25 120.2 200 42.0
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 2.1e-25 120.2 198 44.9
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 2.7e-25 119.8 185 45.4
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 3.5e-25 119.4 191 39.8
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.6e-25 119.0 194 41.2
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 4.6e-25 119.0 186 44.6
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.0e-25 118.6 186 46.2
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 6.0e-25 118.6 194 40.7
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 6.0e-25 118.6 175 42.9
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 6.0e-25 118.6 194 44.3
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 6.0e-25 118.6 198 39.9
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 7.9e-25 118.2 193 42.5
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 1.0e-24 117.9 196 42.3
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 1.3e-24 117.5 197 40.6
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.8e-24 117.1 192 42.7
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.3e-24 116.7 177 44.1
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 2.3e-24 116.7 206 43.2
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.3e-24 116.7 206 43.7
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.3e-24 116.7 206 43.7
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.3e-24 116.7 206 43.2
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.3e-24 116.7 206 43.2
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 3.0e-24 116.3 195 42.6
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 3.9e-24 115.9 201 42.3
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.9e-24 115.9 192 42.7
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 5.1e-24 115.5 180 44.4
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 5.1e-24 115.5 179 41.3
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 5.1e-24 115.5 177 44.6
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 6.7e-24 115.2 199 40.2
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 6.7e-24 115.2 192 42.7
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 6.7e-24 115.2 193 45.6
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 8.7e-24 114.8 196 42.9
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 1.1e-23 114.4 175 44.6
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 1.9e-23 113.6 223 39.9
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 2.5e-23 113.2 211 40.3
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 2.5e-23 113.2 209 38.3
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.5e-23 113.2 176 43.2
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 3.3e-23 112.8 195 41.5
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 3.3e-23 112.8 192 43.8
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 4.3e-23 112.5 196 41.3
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 4.3e-23 112.5 185 42.7
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.3e-23 112.5 192 42.7
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 5.7e-23 112.1 196 45.9
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 5.7e-23 112.1 190 43.7
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 9.6e-23 111.3 169 45.0
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 9.6e-23 111.3 165 47.3
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 9.6e-23 111.3 185 42.2
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 9.6e-23 111.3 181 41.4
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 1.3e-22 110.9 183 42.6
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 1.6e-22 110.5 180 42.8
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 2.1e-22 110.2 189 40.7
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 2.1e-22 110.2 173 45.1
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 2.8e-22 109.8 186 42.5
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 2.8e-22 109.8 197 44.7
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.8e-22 109.8 196 42.9
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 4.8e-22 109.0 195 43.1
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 4.8e-22 109.0 182 42.9
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 6.3e-22 108.6 207 40.6
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 8.2e-22 108.2 179 44.1
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 8.2e-22 108.2 184 41.8
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 8.2e-22 108.2 184 41.8
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 8.2e-22 108.2 209 39.7
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.1e-21 107.8 191 42.4
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 1.1e-21 107.8 223 37.2
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.8e-21 107.1 193 39.4
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 1.8e-21 107.1 183 40.4
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 2.4e-21 106.7 170 41.8
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 2.4e-21 106.7 209 42.6
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 2.4e-21 106.7 188 39.4
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 4.1e-21 105.9 216 38.9
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 5.3e-21 105.5 190 40.0
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 5.3e-21 105.5 183 43.7
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 6.9e-21 105.1 166 44.0
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 6.9e-21 105.1 171 45.0
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 6.9e-21 105.1 171 45.0
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 9.0e-21 104.8 152 48.0
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 9.0e-21 104.8 189 39.2
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 9.0e-21 104.8 196 39.3
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 9.0e-21 104.8 171 40.9
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 1.2e-20 104.4 193 43.5
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.5e-20 104.0 216 38.9
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.5e-20 104.0 190 41.6
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 2.6e-20 103.2 244 36.5
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 3.4e-20 102.8 202 40.6
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 5.9e-20 102.1 206 39.3
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 5.9e-20 102.1 203 36.9
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 7.6e-20 101.7 209 43.1
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 7.6e-20 101.7 191 36.1
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.0e-19 101.3 201 38.3
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.0e-19 101.3 188 41.0
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.3e-19 100.9 212 38.7
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 1.3e-19 100.9 194 38.1
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 1.3e-19 100.9 197 37.6
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.7e-19 100.5 193 38.3
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.7e-19 100.5 201 37.8
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.7e-19 100.5 207 38.6
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.8e-19 99.4 199 39.7
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 5.0e-19 99.0 173 41.0
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 5.0e-19 99.0 185 39.5
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 6.5e-19 98.6 184 39.1
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 8.5e-19 98.2 180 42.2
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 8.5e-19 98.2 188 38.8
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 8.5e-19 98.2 233 36.5
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.1e-18 97.8 186 38.2
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 1.4e-18 97.4 172 40.1
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 1.4e-18 97.4 121 46.3
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.9e-18 97.1 179 41.9
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.9e-18 97.1 174 39.7
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 2.5e-18 96.7 175 38.9
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 2.5e-18 96.7 172 40.1
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.5e-18 96.7 153 41.8
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 2.5e-18 96.7 189 38.6
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 3.2e-18 96.3 175 40.0
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 4.2e-18 95.9 188 38.3
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 4.2e-18 95.9 159 44.7
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 5.5e-18 95.5 194 37.6
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 5.5e-18 95.5 156 42.3
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 9.3e-18 94.7 194 38.1
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 9.3e-18 94.7 191 37.7
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-17 94.4 173 42.2
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 1.2e-17 94.4 175 37.7
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.7e-17 93.2 173 40.5
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 3.6e-17 92.8 183 41.0
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 3.6e-17 92.8 173 38.7
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 4.6e-17 92.4 184 40.8
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 6.1e-17 92.0 175 39.4
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 7.9e-17 91.7 202 36.1
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 1.0e-16 91.3 174 37.9
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.3e-16 90.9 128 46.1
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.8e-16 90.5 180 38.3
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 2.3e-16 90.1 184 37.5
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 2.3e-16 90.1 118 45.8
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 3.0e-16 89.7 177 37.9
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 6.7e-16 88.6 116 49.1
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 8.7e-16 88.2 169 39.1
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 8.7e-16 88.2 127 44.9
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.5e-15 87.4 78 65.4
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 2.5e-15 86.7 177 37.3
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 3.3e-15 86.3 177 36.7
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.3e-15 86.3 204 39.2
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 3.3e-15 86.3 202 36.6
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 4.3e-15 85.9 186 36.0
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 5.7e-15 85.5 170 36.5
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 5.7e-15 85.5 201 38.8
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 9.7e-15 84.7 175 36.6
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 9.7e-15 84.7 186 35.5
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.3e-14 84.3 127 42.5
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 8.2e-14 81.6 198 35.4
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 8.2e-14 81.6 198 35.4
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 1.1e-13 81.3 199 35.2
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 1.1e-13 81.3 179 38.0
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 1.4e-13 80.9 171 36.3
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.3e-13 79.0 181 36.5
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 9.0e-13 78.2 119 42.9
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.5e-12 77.4 187 35.8
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.5e-12 77.4 173 37.0
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 8.5e-11 71.6 68 57.4
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 1.9e-10 70.5 145 38.6
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 3.2e-10 69.7 147 38.8
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 4.2e-10 69.3 72 47.2
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 7.2e-10 68.6 146 38.4
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 8.8e-08 61.6 156 30.8
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.0e-07 60.5 74 51.4
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 4.8e-06 55.8 162 29.0
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 4.8e-06 55.8 197 29.4


User provided reference genes

Program Settings