Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 5.9e-147 524.2 275 100.0
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 2.2e-138 495.7 275 94.9
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.2e-118 430.3 277 83.0
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 4.8e-117 424.9 275 81.5
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 3.1e-116 422.2 275 81.5
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 2.0e-115 419.5 272 80.9
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 4.5e-115 418.3 276 78.6
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 4.5e-115 418.3 277 80.9
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 3.8e-114 415.2 272 79.0
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 5.0e-114 414.8 276 79.0
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 2.5e-113 412.5 279 79.2
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 3.2e-113 412.1 272 80.9
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 4.2e-113 411.8 272 78.3
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 9.4e-113 410.6 272 78.7
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 1.6e-112 409.8 272 80.1
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 2.1e-112 409.5 274 79.2
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 3.6e-112 408.7 275 78.9
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 4.7e-112 408.3 276 77.9
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 4.7e-112 408.3 274 78.8
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 4.7e-112 408.3 274 78.8
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 6.1e-112 407.9 274 78.8
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 1.8e-111 406.4 272 80.1
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 5.2e-111 404.8 277 78.7
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 5.2e-111 404.8 269 79.9
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 1.2e-110 403.7 277 79.4
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.2e-110 403.7 274 78.1
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 1.5e-110 403.3 273 77.7
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.6e-110 402.5 275 79.6
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 4.4e-110 401.7 294 75.5
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 4.4e-110 401.7 274 78.1
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 9.8e-110 400.6 281 77.9
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 1.3e-109 400.2 277 77.6
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 1.3e-109 400.2 277 77.6
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 3.7e-109 398.7 272 77.2
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 4.9e-109 398.3 282 76.2
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 1.4e-108 396.7 274 76.3
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 1.4e-108 396.7 273 77.3
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 1.8e-108 396.4 272 77.9
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 2.4e-108 396.0 271 76.0
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 2.4e-108 396.0 270 78.1
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 4.1e-108 395.2 288 74.7
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 4.1e-108 395.2 274 77.7
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 7.0e-108 394.4 274 75.9
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 9.1e-108 394.0 272 76.1
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 9.1e-108 394.0 272 77.6
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 9.1e-108 394.0 273 76.6
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 1.2e-107 393.7 272 77.6
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 1.2e-107 393.7 270 78.1
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 1.2e-107 393.7 275 76.4
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 2.7e-107 392.5 272 77.6
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 3.5e-107 392.1 277 74.0
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 4.5e-107 391.7 270 77.8
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 5.9e-107 391.3 269 76.6
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 7.7e-107 391.0 268 76.9
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 1.3e-106 390.2 269 77.3
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 1.7e-106 389.8 275 76.4
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 5.0e-106 388.3 272 76.5
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 5.0e-106 388.3 269 77.7
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 1.1e-105 387.1 270 77.4
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.1e-105 387.1 270 76.3
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 1.5e-105 386.7 277 73.3
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 1.5e-105 386.7 277 75.1
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 1.9e-105 386.3 270 76.7
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.9e-105 386.3 275 74.5
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 2.5e-105 386.0 277 73.3
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 1.2e-104 383.6 272 75.0
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.6e-104 383.3 274 74.8
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 1.6e-104 383.3 270 76.3
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 3.6e-104 382.1 366 60.1
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 4.7e-104 381.7 274 74.1
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 4.7e-104 381.7 270 75.9
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 4.7e-104 381.7 269 75.8
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 8.0e-104 380.9 270 75.2
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 1.0e-103 380.6 275 73.8
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 1.0e-103 380.6 270 75.2
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 3.0e-103 379.0 275 73.5
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 3.0e-103 379.0 269 75.8
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 4.0e-103 378.6 270 74.8
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 6.8e-103 377.9 289 69.9
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 1.5e-102 376.7 273 74.7
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 2.0e-102 376.3 275 74.2
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 4.4e-102 375.2 273 74.0
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 9.8e-102 374.0 273 73.3
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 1.3e-101 373.6 273 74.0
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.3e-101 373.6 336 64.6
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 1.3e-101 373.6 275 74.2
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 4.9e-101 371.7 273 72.9
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-100 370.2 273 72.5
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 2.4e-100 369.4 273 72.2
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 3.2e-100 369.0 273 72.5
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 5.4e-100 368.2 273 72.2
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 7.0e-100 367.9 273 72.5
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 7.0e-100 367.9 273 72.2
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-99 367.1 273 71.8
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 1.2e-99 367.1 273 72.2
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 7.8e-99 364.4 300 67.7
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 2.9e-98 362.5 274 72.6
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 6.6e-98 361.3 272 71.0
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 6.6e-98 361.3 322 65.8
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 1.1e-97 360.5 256 75.4
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 1.5e-97 360.1 272 71.0
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 1.5e-97 360.1 272 71.0
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 1.5e-97 360.1 272 71.0
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 6.1e-96 354.8 276 69.9
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.0e-95 352.1 269 68.8
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 1.5e-94 350.1 315 63.8
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 3.4e-94 349.0 271 68.6
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 9.8e-94 347.4 271 68.3
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 2.4e-92 342.8 268 68.3
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 1.3e-90 337.0 256 74.2
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 1.1e-89 334.0 274 65.7
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 2.5e-89 332.8 284 64.4
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 4.3e-89 332.0 485 45.8
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 1.2e-88 330.5 271 65.7
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.2e-88 330.5 485 45.6
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 9.8e-86 320.9 269 62.5
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 2.9e-85 319.3 275 60.0
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 1.4e-84 317.0 270 60.7
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 7.8e-83 311.2 213 78.9
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 6.8e-79 298.1 272 60.7
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 2.1e-75 286.6 265 58.9
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 3.0e-74 282.7 249 61.4
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 8.6e-74 281.2 263 56.7
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.2e-72 277.3 263 56.3
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 3.6e-72 275.8 263 56.3
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 4.0e-71 272.3 250 60.8
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 5.8e-70 268.5 277 55.2
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 7.6e-70 268.1 276 55.4
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 4.2e-68 262.3 253 58.9
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 5.4e-68 261.9 265 52.8
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 9.3e-68 261.2 254 59.1
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 7.8e-67 258.1 276 54.7
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 3.9e-66 255.8 277 54.9
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 6.6e-66 255.0 164 81.1
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 3.3e-65 252.7 276 48.9
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 2.4e-63 246.5 259 60.6
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 4.4e-62 242.3 252 57.5
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 2.2e-61 240.0 223 61.0
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 2.9e-61 239.6 274 48.9
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 2.9e-61 239.6 283 56.5
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 7.9e-59 231.5 276 52.2
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 5.1e-58 228.8 140 82.1
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 2.5e-57 226.5 251 53.4
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.6e-54 216.5 271 49.4
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 3.8e-53 212.6 266 47.7
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 2.1e-48 196.8 243 48.6
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 4.0e-47 192.6 131 76.3
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.7e-43 179.9 164 64.6
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 7.9e-43 178.3 136 70.6
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 2.3e-42 176.8 268 45.1
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.1e-41 174.5 137 67.2
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 2.4e-39 166.8 138 63.0
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.1e-39 166.0 148 60.1
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 3.2e-36 156.4 163 55.8
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.5e-35 152.9 130 61.5
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 4.6e-35 152.5 228 43.0
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 2.3e-34 150.2 96 80.2
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.8e-32 142.5 120 65.8
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 3.8e-29 132.9 118 61.0
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 6.3e-24 115.5 140 53.6
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 2.4e-23 113.6 262 31.3
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 2.0e-22 110.5 257 33.5
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 1.7e-21 107.5 72 81.9
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 3.8e-21 106.3 288 29.9
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 6.1e-19 99.0 172 42.4
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 6.7e-18 95.5 58 79.3
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 7.4e-17 92.0 77 58.4
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 2.2e-16 90.5 53 79.2
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 2.2e-16 90.5 71 69.0
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 1.8e-15 87.4 69 62.3
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 5.3e-15 85.9 52 82.7
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 7.0e-15 85.5 52 80.8
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 7.0e-15 85.5 52 80.8
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 9.1e-15 85.1 65 67.7
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 1.6e-14 84.3 52 80.8
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 3.5e-14 83.2 52 80.8
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 1.7e-13 80.9 70 61.4
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 2.9e-13 80.1 50 78.0
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 8.5e-13 78.6 59 69.5
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 5.5e-12 75.9 63 63.5
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 5.5e-12 75.9 63 63.5
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 6.1e-11 72.4 63 60.3
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 8.0e-11 72.0 63 60.3
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 5.7e-09 65.9 54 63.0


User provided reference genes

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