Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.9e-145 519.2 275 100.0
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 3.8e-138 495.0 275 94.9
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 2.6e-118 429.1 277 82.3
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 3.7e-117 425.2 275 81.5
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 4.8e-117 424.9 275 81.1
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 8.3e-117 424.1 272 81.2
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 7.0e-116 421.0 277 80.9
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 1.7e-114 416.4 272 78.7
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 2.9e-114 415.6 276 77.5
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 2.9e-114 415.6 276 78.6
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 6.5e-114 414.5 272 79.0
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 8.5e-114 414.1 279 78.9
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 1.1e-113 413.7 270 80.7
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 1.9e-113 412.9 272 78.3
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 9.4e-113 410.6 274 78.8
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.6e-112 409.8 276 77.5
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.1e-112 409.5 274 78.5
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.1e-112 409.5 274 78.5
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 2.7e-112 409.1 272 80.1
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 2.7e-112 409.1 274 78.5
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 4.7e-112 408.3 275 78.2
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 6.1e-112 407.9 277 78.7
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 6.1e-112 407.9 275 80.0
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 8.0e-112 407.5 269 79.9
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 1.4e-111 406.8 277 79.4
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 4.0e-111 405.2 272 78.3
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 4.0e-111 405.2 273 77.7
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 5.2e-111 404.8 272 78.7
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 5.2e-111 404.8 274 77.7
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 5.2e-111 404.8 274 78.1
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 8.8e-111 404.1 294 75.5
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 5.7e-110 401.4 277 77.3
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 5.7e-110 401.4 277 77.3
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 9.8e-110 400.6 274 76.6
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 9.8e-110 400.6 272 78.3
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 1.3e-109 400.2 288 75.0
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.2e-109 399.4 282 75.9
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 2.2e-109 399.4 273 77.3
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 2.8e-109 399.1 272 78.3
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 2.8e-109 399.1 274 76.3
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 2.8e-109 399.1 281 76.9
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 2.8e-109 399.1 270 78.1
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 6.3e-109 397.9 272 77.9
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 6.3e-109 397.9 270 78.5
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 6.3e-109 397.9 273 76.6
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 1.1e-108 397.1 274 77.4
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 1.4e-108 396.7 272 77.9
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 1.4e-108 396.7 272 76.1
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 1.4e-108 396.7 269 77.0
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 1.4e-108 396.7 271 75.6
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 4.1e-108 395.2 270 78.1
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 5.4e-108 394.8 275 76.0
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 1.2e-107 393.7 268 76.9
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 2.0e-107 392.9 269 77.3
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 2.0e-107 392.9 272 76.8
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 2.7e-107 392.5 269 78.1
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 4.5e-107 391.7 277 75.5
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 5.9e-107 391.3 277 75.5
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.3e-106 390.2 270 76.3
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 1.7e-106 389.8 270 77.4
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 2.9e-106 389.0 270 76.7
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.8e-106 388.7 272 75.7
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 3.8e-106 388.7 277 73.3
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 3.8e-106 388.7 272 75.4
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 5.0e-106 388.3 275 74.2
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.1e-105 387.1 272 75.0
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 1.9e-105 386.3 269 76.2
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 7.2e-105 384.4 270 75.9
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 7.2e-105 384.4 275 73.8
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 7.2e-105 384.4 277 72.6
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 1.2e-104 383.6 270 75.2
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 1.2e-104 383.6 277 72.6
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 1.6e-104 383.3 279 74.9
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 2.1e-104 382.9 275 73.5
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 2.8e-104 382.5 270 75.6
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 4.7e-104 381.7 270 74.8
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 4.7e-104 381.7 269 75.8
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 8.0e-104 380.9 273 74.0
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 8.0e-104 380.9 273 75.1
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 1.0e-103 380.6 273 74.7
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 2.3e-103 379.4 289 69.6
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 3.0e-103 379.0 273 74.0
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 3.0e-103 379.0 275 74.2
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 4.0e-103 378.6 270 74.4
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 4.0e-103 378.6 273 73.6
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 8.9e-103 377.5 364 59.1
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-102 377.1 273 73.3
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 1.5e-102 376.7 273 72.9
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 2.6e-102 375.9 273 73.3
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 2.6e-102 375.9 336 64.3
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 4.4e-102 375.2 273 72.9
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 5.7e-102 374.8 273 73.3
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 5.7e-102 374.8 273 72.9
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 9.8e-102 374.0 273 72.5
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 9.8e-102 374.0 273 72.9
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.8e-100 369.8 274 73.4
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 4.1e-100 368.6 272 71.7
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 9.2e-100 367.5 272 71.7
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 9.2e-100 367.5 272 71.7
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 9.2e-100 367.5 272 71.7
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.6e-99 366.7 322 66.1
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 7.8e-99 364.4 300 67.3
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 3.9e-98 362.1 276 70.7
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 2.5e-97 359.4 256 75.0
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 1.0e-95 354.0 315 63.8
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.0e-95 354.0 267 69.3
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 2.2e-93 346.3 271 67.5
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 6.4e-93 344.7 271 66.8
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 6.4e-93 344.7 268 68.3
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 7.0e-92 341.3 256 74.6
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 5.6e-89 331.6 284 64.1
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 5.6e-89 331.6 274 65.0
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.2e-88 330.5 483 45.1
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 3.6e-88 328.9 270 65.6
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.6e-88 328.9 483 44.9
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 8.9e-87 324.3 269 62.5
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 1.4e-84 317.0 275 58.9
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 5.4e-84 315.1 270 59.6
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.3e-82 310.5 213 78.4
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 1.8e-79 300.1 272 61.0
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 1.2e-75 287.3 249 61.4
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 2.1e-75 286.6 265 58.1
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 8.6e-74 281.2 263 56.3
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.5e-73 279.6 263 56.3
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 9.6e-73 277.7 275 55.3
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 2.1e-72 276.6 250 60.8
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 3.1e-71 272.7 276 55.4
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 3.1e-71 272.7 277 55.2
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 2.2e-69 266.5 253 58.9
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 4.9e-69 265.4 254 59.1
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 3.2e-68 262.7 276 54.7
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 4.2e-68 262.3 262 53.1
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 2.1e-67 260.0 277 54.9
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 2.1e-67 260.0 164 82.3
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 1.3e-66 257.3 276 49.6
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 3.6e-64 249.2 258 60.9
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.2e-62 244.2 296 53.7
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 1.5e-62 243.8 252 57.1
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 5.8e-62 241.9 274 48.9
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-60 237.3 223 60.1
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 1.9e-60 236.9 276 52.5
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 3.0e-58 229.6 251 53.0
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 3.9e-58 229.2 140 81.4
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 3.6e-56 222.6 266 49.2
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 4.5e-54 215.7 269 48.3
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 9.6e-49 198.0 244 48.0
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 1.6e-48 197.2 131 77.1
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 2.5e-44 183.3 136 71.3
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 3.2e-44 183.0 268 45.9
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 7.1e-44 181.8 164 64.6
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 5.1e-42 175.6 131 69.5
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.7e-40 169.5 148 60.8
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 8.2e-40 168.3 138 62.3
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 5.3e-39 165.6 163 57.7
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 3.4e-38 162.9 228 44.7
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 7.2e-36 155.2 96 81.2
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.0e-34 149.8 130 60.8
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.8e-32 143.3 101 73.3
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 6.5e-29 132.1 141 53.2
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 4.3e-25 119.4 262 32.4
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 4.8e-24 115.9 140 52.9
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 1.8e-23 114.0 290 30.7
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 5.3e-23 112.5 254 34.3
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 2.6e-22 110.2 72 81.9
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.8e-18 97.4 150 46.7
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 1.5e-17 94.4 58 79.3
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 9.7e-17 91.7 77 57.1
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 4.8e-16 89.4 53 79.2
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 1.4e-15 87.8 69 62.3
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 1.4e-15 87.8 71 67.6
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 5.3e-15 85.9 52 82.7
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 7.0e-15 85.5 52 80.8
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 7.0e-15 85.5 52 80.8
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 1.6e-14 84.3 52 80.8
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 1.6e-14 84.3 65 66.2
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 3.5e-14 83.2 52 80.8
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 7.7e-14 82.0 59 71.2
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 2.9e-13 80.1 50 78.0
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 3.8e-13 79.7 70 58.6
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.2e-11 74.7 63 61.9
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.2e-11 74.7 63 61.9
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.4e-10 71.2 63 58.7
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.8e-10 70.9 63 58.7
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 4.4e-09 66.2 54 63.0


User provided reference genes

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