Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.4e-157 559.7 298 100.0
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 7.3e-135 484.2 296 85.5
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 1.2e-134 483.4 290 86.2
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 2.8e-134 482.3 294 84.4
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 3.6e-134 481.9 296 85.1
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 4.7e-134 481.5 296 85.5
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 4.7e-134 481.5 294 83.0
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 1.1e-133 480.3 294 84.7
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 2.3e-133 479.2 294 85.7
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 3.1e-133 478.8 295 86.4
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 4.0e-133 478.4 294 83.3
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 5.2e-133 478.0 294 84.4
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 4.4e-132 474.9 294 83.7
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 7.5e-132 474.2 254 99.2
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.2e-131 472.6 292 83.9
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.2e-131 472.6 292 83.9
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 3.7e-131 471.9 292 84.2
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 6.4e-131 471.1 292 83.6
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 1.1e-130 470.3 296 83.8
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 4.1e-130 468.4 292 83.9
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 7.1e-130 467.6 292 83.2
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 2.1e-129 466.1 291 82.8
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 2.1e-129 466.1 300 81.7
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 2.1e-129 466.1 300 81.7
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 2.7e-129 465.7 291 82.1
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.3e-128 463.4 286 83.6
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 1.7e-128 463.0 290 83.1
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 3.9e-128 461.8 286 83.9
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.1e-127 460.3 286 82.5
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 1.9e-127 459.5 294 79.9
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 3.6e-126 455.3 294 80.6
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 4.7e-126 454.9 292 80.1
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 1.1e-125 453.8 294 80.3
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 2.3e-125 452.6 293 80.5
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 2.3e-125 452.6 293 80.5
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 3.1e-125 452.2 282 81.2
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 1.2e-124 450.3 281 82.9
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 1.2e-124 450.3 281 82.9
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 2.6e-124 449.1 301 78.7
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 4.4e-124 448.4 292 79.8
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 5.8e-124 448.0 290 80.3
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 5.8e-124 448.0 291 78.7
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 5.8e-124 448.0 292 79.8
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 9.9e-124 447.2 299 79.6
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 9.9e-124 447.2 286 80.1
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 1.7e-123 446.4 295 80.7
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 2.9e-123 445.7 293 78.2
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 4.9e-123 444.9 286 79.7
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 1.1e-122 443.7 285 79.6
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 1.9e-122 443.0 294 79.3
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 1.9e-122 443.0 290 79.7
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 2.4e-122 442.6 294 79.3
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 2.4e-122 442.6 281 82.6
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 2.4e-122 442.6 291 77.3
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 3.2e-122 442.2 293 78.2
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 9.2e-122 440.7 294 77.9
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 1.6e-121 439.9 306 77.5
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 1.6e-121 439.9 295 76.6
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.7e-121 439.1 264 85.2
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 6.0e-121 438.0 282 79.4
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 7.8e-121 437.6 334 71.0
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 7.8e-121 437.6 293 77.5
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 7.8e-121 437.6 265 84.9
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 1.0e-120 437.2 295 76.3
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 1.7e-120 436.4 292 77.7
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.3e-120 436.0 264 84.8
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.9e-120 435.3 266 84.2
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 5.1e-120 434.9 295 75.9
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 5.1e-120 434.9 295 75.6
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 5.1e-120 434.9 300 77.0
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 8.6e-120 434.1 285 79.3
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 2.5e-119 432.6 288 77.1
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 1.2e-118 430.3 296 75.7
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 1.2e-118 430.3 296 75.3
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 1.2e-118 430.3 288 76.7
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 2.1e-118 429.5 292 76.4
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 2.1e-118 429.5 288 76.7
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 2.1e-118 429.5 295 76.6
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 3.6e-118 428.7 327 70.6
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 2.4e-117 426.0 284 77.5
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 2.4e-117 426.0 290 75.5
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 4.0e-117 425.2 290 75.5
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 5.2e-117 424.9 289 76.5
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 1.2e-116 423.7 289 76.5
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 1.2e-116 423.7 296 77.0
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 1.5e-116 423.3 280 77.5
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 2.0e-116 422.9 286 75.9
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 2.0e-116 422.9 286 75.9
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 2.6e-116 422.5 281 77.2
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 3.4e-116 422.2 286 75.9
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 7.6e-116 421.0 280 76.4
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 9.9e-116 420.6 285 75.8
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 1.7e-115 419.9 281 76.5
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 2.2e-115 419.5 283 76.3
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 2.9e-115 419.1 290 74.5
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 3.8e-115 418.7 321 69.8
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.9e-115 418.3 265 83.4
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 8.4e-115 417.5 280 76.8
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 1.1e-114 417.2 281 75.8
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 1.4e-114 416.8 284 75.4
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 1.9e-114 416.4 281 75.4
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 2.4e-114 416.0 280 76.1
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 2.4e-114 416.0 280 76.1
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 9.3e-114 414.1 284 74.6
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 2.1e-113 412.9 280 75.7
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 6.0e-113 411.4 283 77.4
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 1.0e-112 410.6 295 72.2
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 1.3e-112 410.2 291 73.2
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 1.3e-112 410.2 315 69.2
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 1.3e-110 403.7 281 74.4
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 7.6e-108 394.4 264 79.9
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 1.7e-107 393.3 293 68.9
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 4.2e-106 388.7 294 68.0
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 9.3e-106 387.5 292 71.2
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 6.0e-105 384.8 290 67.9
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 6.0e-105 384.8 280 73.9
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.3e-104 383.6 281 73.7
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 2.3e-104 382.9 295 71.2
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 3.9e-104 382.1 296 70.9
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 8.7e-104 380.9 277 70.0
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.5e-103 380.2 233 82.4
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 1.5e-103 380.2 349 61.3
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 2.1e-102 376.3 282 69.5
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 3.6e-102 375.6 300 65.3
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 3.2e-98 362.5 280 64.6
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 4.2e-98 362.1 288 65.3
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 1.6e-94 350.1 212 84.4
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 3.7e-94 349.0 283 63.6
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 3.7e-94 349.0 274 63.9
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 3.0e-88 329.3 292 64.0
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 3.3e-87 325.9 266 68.0
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 1.6e-86 323.6 284 57.4
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 1.5e-84 317.0 300 58.7
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 1.0e-83 314.3 201 79.1
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 4.5e-76 288.9 211 70.6
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 1.3e-75 287.3 294 52.0
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 3.0e-72 276.2 203 70.4
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 6.7e-72 275.0 164 83.5
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 2.6e-71 273.1 252 60.3
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 3.1e-69 266.2 194 75.3
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 1.0e-67 261.2 284 51.8
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 1.3e-59 234.2 244 48.0
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.5e-58 230.7 163 73.0
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 3.8e-43 179.5 169 62.1
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 3.2e-42 176.4 179 55.9
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 3.2e-42 176.4 179 55.9
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 7.0e-37 158.7 108 69.4
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 7.0e-37 158.7 108 69.4
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 1.0e-35 154.8 145 62.8
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 2.0e-31 140.6 98 69.4
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 2.9e-30 136.7 80 82.5
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 2.4e-29 133.7 94 74.5
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 9.2e-29 131.7 90 80.0
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 9.8e-23 111.7 85 63.5
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 1.6e-20 104.4 94 64.9
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 5.0e-19 99.4 85 57.6
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 6.6e-19 99.0 83 61.4
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 6.2e-17 92.4 86 58.1
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 4.0e-16 89.7 58 77.6
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 1.2e-15 88.2 91 50.5
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 7.5e-15 85.5 121 43.0
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.3e-14 84.7 52 84.6
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 1.6e-12 77.8 68 57.4
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 2.1e-12 77.4 69 63.8
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 6.0e-12 75.9 68 57.4
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 1.3e-11 74.7 60 60.0
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 8.1e-09 65.5 106 38.7
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 4.0e-08 63.2 59 55.9
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 3.4e-07 60.1 38 71.1
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 3.4e-07 60.1 38 71.1
BcaB01g01562 Brassica carinata HOM05D004217 ORTHO05D091974 2.9e-06 57.0 35 74.3
BcaB01g01563 Brassica carinata HOM05D004217 ORTHO05D094843 2.9e-06 57.0 35 74.3


User provided reference genes

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