Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0000670 Simmondsia chinensis HOM05D007561 ORTHO05D007661 2.0e-256 888.6 468 100.0
Oeu020265.1 Olea europaea HOM05D007561 ORTHO05D007661 1.5e-57 228.0 501 39.1
TAR561G0001 Trochodendron aralioides HOM05D007561 ORTHO05D007661 2.5e-57 227.3 472 39.2
Ciclev10013885m.g Citrus clementina HOM05D007561 ORTHO05D007661 5.3e-55 219.5 477 40.3
AUR62018475 Chenopodium quinoa HOM05D007561 ORTHO05D007661 2.2e-53 214.2 520 40.0
AUR62020949 Chenopodium quinoa HOM05D007561 ORTHO05D007661 4.9e-53 213.0 515 39.2
Potri.005G090000 Populus trichocarpa HOM05D007561 ORTHO05D007661 1.2e-51 208.4 479 38.0
TWI77G0394 Tripterygium wilfordii HOM05D007561 ORTHO05D007661 3.5e-51 206.8 450 40.0
Dinv37052 Davidia involucrata HOM05D007561 ORTHO05D007661 7.9e-51 205.7 449 40.3
Manes.04G066400 Manihot esculenta HOM05D007561 ORTHO05D007661 6.6e-50 202.6 427 38.9
Lj2A414T29 Lonicera japonica HOM05D007561 ORTHO05D007661 9.6e-49 198.7 455 39.6
SalBow6G1989 Salvia bowleyana HOM05D007561 ORTHO05D007661 3.6e-48 196.8 425 39.3
SalBow6G6384 Salvia bowleyana HOM05D007561 ORTHO05D007661 8.1e-48 195.7 425 39.1
Ah.04g149900 Amaranthus hybridus HOM05D007561 ORTHO05D007661 1.4e-47 194.9 521 38.0
Sabra05G0074100 Salix brachista HOM05D007561 ORTHO05D007661 1.8e-47 194.5 477 37.7
Cpa.g.sc33.185 Carica papaya HOM05D007561 ORTHO05D007661 1.5e-46 191.4 440 37.7
PSO732G0159 Papaver somniferum HOM05D007561 ORTHO05D007661 2.6e-46 190.7 478 35.8
TWI74G0078 Tripterygium wilfordii HOM05D007561 ORTHO05D007661 4.5e-46 189.9 452 38.1
Potri.007G074056 Populus trichocarpa HOM05D007561 ORTHO05D007661 8.4e-45 185.7 462 38.3
RhsimUnG0021900 Rhododendron simsii HOM05D007561 ORTHO05D007661 1.9e-44 184.5 461 38.6
DCAR_009109 Daucus carota HOM05D007561 ORTHO05D007661 3.2e-44 183.7 475 35.8
Nitab4.5_0000811g0050 Nicotiana tabacum HOM05D007561 ORTHO05D007661 9.3e-44 182.2 464 38.4
Nitab4.5_0000613g0170 Nicotiana tabacum HOM05D007561 ORTHO05D007661 2.7e-43 180.6 457 37.4
CAN.G128.129 Capsicum annuum HOM05D007561 ORTHO05D007661 1.0e-42 178.7 446 37.4
PGSC0003DMG400028120 Solanum tuberosum HOM05D007561 ORTHO05D007661 8.7e-42 175.6 399 38.3
Atru.chr8.931 Acer truncatum HOM05D007561 ORTHO05D007661 1.9e-41 174.5 450 38.7
MSTRG.19744 Avicennia marina HOM05D007561 ORTHO05D007661 3.3e-41 173.7 476 37.2
PSO675G2416 Papaver somniferum HOM05D007561 ORTHO05D007661 4.3e-41 173.3 520 34.6
Sopen10g031840 Solanum pennellii HOM05D007561 ORTHO05D007661 5.6e-41 172.9 486 37.7
Solyc10g081340.1 Solanum lycopersicum HOM05D007561 ORTHO05D007661 9.6e-41 172.2 487 38.0
Ca_08339_v3 Cicer arietinum L. HOM05D007561 ORTHO05D007661 2.1e-40 171.0 442 35.3
Migut.J01597 Erythranthe guttata HOM05D007561 ORTHO05D007661 2.0e-38 164.5 500 34.8
Medtr7g088200 Medicago truncatula HOM05D007561 ORTHO05D007661 2.6e-38 164.1 412 37.1
Actinidia18379 Actinidia chinensis HOM05D007561 ORTHO05D007661 1.0e-37 162.2 457 35.7
CiPaw.09G161100 Carya illinoinensis HOM05D007561 ORTHO05D007661 4.9e-37 159.8 500 36.6
Peaxi162Scf00575g00079 Petunia axillaris HOM05D007561 ORTHO05D007661 3.2e-36 157.1 479 33.2
Glyma.19G123300 Glycine max HOM05D007561 ORTHO05D007661 1.2e-35 155.2 442 33.9
MSTRG.6258 Avicennia marina HOM05D007561 ORTHO05D007661 2.7e-35 154.1 483 35.4
Glyma.03G118900 Glycine max HOM05D007561 ORTHO05D007661 4.6e-35 153.3 469 32.6
Psat3g083040 Pisum sativum HOM05D007561 ORTHO05D007661 4.6e-35 153.3 448 35.3
Duzib177G0099 Durio zibethinus HOM05D007561 ORTHO05D007661 5.1e-34 149.8 449 34.7
Sc19g0007720 Simmondsia chinensis HOM05D007561 ORTHO05D007661 3.3e-33 147.1 372 35.2
Aqoxy2G00670 Aquilegia oxysepala HOM05D007561 ORTHO05D007661 9.6e-33 145.6 489 33.3
GSVIVG01029894001 Vitis vinifera HOM05D007561 ORTHO05D007661 9.6e-33 145.6 322 36.3
Gorai.012G026500 Gossypium raimondii HOM05D007561 ORTHO05D007661 1.3e-32 145.2 387 37.2
PGR042G3351 Punica granatum HOM05D007561 ORTHO05D007661 2.8e-32 144.1 414 37.0
SGA_v2.0_scaffold66G22349 Striga asiatica HOM05D007561 ORTHO05D007661 8.2e-32 142.5 349 38.4
VMungo1383G3023 Vigna mungo HOM05D007561 ORTHO05D007661 8.2e-32 142.5 465 32.7
Thecc.05G190500 Theobroma cacao HOM05D007561 ORTHO05D007661 1.1e-31 142.1 474 34.2
SGA_v2.0_scaffold69G23211 Striga asiatica HOM05D007561 ORTHO05D007661 1.8e-31 141.4 420 36.7
Sabra07G0062300 Salix brachista HOM05D007561 ORTHO05D007661 2.4e-31 141.0 373 34.6
Lj1g0025432 Lotus japonicus HOM05D007561 ORTHO05D007661 3.1e-31 140.6 403 34.0
Gohir.A05G393000 Gossypium hirsutum HOM05D007561 ORTHO05D007661 4.1e-31 140.2 389 36.5
Gohir.D04G022850 Gossypium hirsutum HOM05D007561 ORTHO05D007661 6.9e-31 139.4 387 35.7
Phvul.001G109100 Phaseolus vulgaris HOM05D007561 ORTHO05D007661 6.9e-31 139.4 484 32.9
Gorai.013G132100 Gossypium raimondii HOM05D007561 ORTHO05D007661 1.2e-30 138.7 461 35.6
Gohir.D13G117500 Gossypium hirsutum HOM05D007561 ORTHO05D007661 2.0e-30 137.9 474 34.4
Sed0024594 Sechium edule HOM05D007561 ORTHO05D007661 3.8e-29 133.7 457 36.3
ATR0068G026 Amborella trichopoda HOM05D007561 ORTHO05D007661 8.4e-29 132.5 479 32.2
Gohir.A13G114700 Gossypium hirsutum HOM05D007561 ORTHO05D007661 1.1e-28 132.1 478 34.7
Sed0023829 Sechium edule HOM05D007561 ORTHO05D007661 2.1e-27 127.9 456 36.2
HPP92_021156 Vanilla planifolia HOM05D007561 ORTHO05D007661 2.7e-27 127.5 455 32.7
MELO3C009692.2 Cucumis melo HOM05D007561 ORTHO05D007661 7.9e-27 125.9 389 36.5
Hma1.2p1_1686F.1_g297500 Hydrangea macrophylla HOM05D007561 ORTHO05D007661 1.0e-26 125.6 487 31.6
CsaV3_3G039500 Cucumis sativus L. HOM05D007561 ORTHO05D007661 1.3e-26 125.2 438 34.5
ClCG10G016860 Citrullus lanatus HOM05D007561 ORTHO05D007661 1.9e-25 121.3 439 34.6
FAN07G2764 Fragaria x ananassa HOM05D007561 ORTHO05D007661 1.6e-24 118.2 491 30.5
Eucgr.A02170 Eucalyptus grandis HOM05D007561 ORTHO05D007661 3.7e-24 117.1 437 34.8
FAN22G1656 Fragaria x ananassa HOM05D007561 ORTHO05D007661 3.7e-24 117.1 479 30.1
FAN17G1891 Fragaria x ananassa HOM05D007561 ORTHO05D007661 4.8e-24 116.7 484 30.2
FAN12G2197 Fragaria x ananassa HOM05D007561 ORTHO05D007661 6.3e-24 116.3 487 30.2
Lalb_Chr22g0358291 Lupinus albus HOM05D007561 ORTHO05D007661 1.4e-23 115.2 380 31.8
RcHm_v2.0_Chr3g0495011 Rosa chinensis HOM05D007561 ORTHO05D007661 1.8e-23 114.8 484 29.8
FAN12G0994 Fragaria x ananassa HOM05D007561 ORTHO05D007661 6.9e-23 112.8 432 30.8
FvH4_4g10470 Fragaria vesca HOM05D007561 ORTHO05D007661 1.2e-22 112.1 485 29.9
PSO339G6289 Papaver somniferum HOM05D007561 ORTHO05D007661 4.5e-22 110.2 423 32.4
CANSAT78G1013 Cannabis sativa HOM05D007561 ORTHO05D007661 2.9e-21 107.5 438 30.6
PSO384G3070 Papaver somniferum HOM05D007561 ORTHO05D007661 2.9e-21 107.5 417 31.4
Haze_20355 Corylus avellana HOM05D007561 ORTHO05D007661 1.1e-20 105.5 395 29.4
PGR042G3883 Punica granatum HOM05D007561 ORTHO05D007661 1.4e-20 105.1 376 32.4
Cfa019892 Carpinus fangiana HOM05D007561 ORTHO05D007661 3.0e-18 97.4 393 29.5
unitig_899.g15656 Utricularia gibba HOM05D007561 ORTHO05D007661 1.5e-17 95.1 250 36.0
QL02p091854 Quercus lobata HOM05D007561 ORTHO05D007661 1.3e-16 92.0 329 31.9
SEGI_17426 Sequoiadendron giganteum HOM05D007561 ORTHO05D007661 5.9e-14 83.2 416 27.2
PGR142G0684 Punica granatum HOM05D007561 ORTHO05D007661 1.0e-13 82.4 300 34.7
Zm00001eb333260 Zea mays HOM05D007561 ORTHO05D007661 5.0e-13 80.1 490 28.2
Carub.0006s0314 Capsella rubella HOM05D011214 ORTHO05D007661 6.5e-13 79.7 379 29.3
CARHR209070 Cardamine hirsuta HOM05D011214 ORTHO05D007661 8.5e-13 79.3 379 30.6
TPR.G23681 Trifolium pratense HOM05D007561 ORTHO05D007661 8.5e-13 79.3 423 30.7
Thhalv10015710m.g Eutrema salsugineum HOM05D011214 ORTHO05D007661 2.5e-12 77.8 389 31.1
AT5G04190 Arabidopsis thaliana HOM05D011214 ORTHO05D007661 7.2e-12 76.3 374 29.9
THA.LOC104816415 Tarenaya hassleriana HOM05D011214 ORTHO05D007661 7.2e-12 76.3 390 30.0
Prupe.7G023100 Prunus persica HOM05D007561 ORTHO05D007661 1.2e-11 75.5 428 27.3
AL6G13810 Arabidopsis lyrata HOM05D011214 ORTHO05D007661 2.7e-11 74.3 392 31.9
Sp6g38560 Schrenkiella parvula HOM05D011214 ORTHO05D007661 3.6e-11 73.9 384 28.6
BcaC06g32123 Brassica carinata HOM05D011214 ORTHO05D007661 7.9e-11 72.8 377 30.0
MBI15_g01650_MAGBIO Magnolia biondii HOM05D007561 ORTHO05D007661 1.0e-10 72.4 121 41.3
MD12G1110900 Malus domestica HOM05D007561 ORTHO05D007661 3.9e-10 70.5 439 25.7
C02p01830 Brassica napus HOM05D011214 ORTHO05D007661 1.1e-09 68.9 339 27.4
Migut.K00204 Erythranthe guttata HOM05D007561 ORTHO05D007661 2.0e-09 68.2 421 27.6
Duzib251G0139 Durio zibethinus HOM05D002654 ORTHO05D002430 2.6e-09 67.8 321 29.3
BcaC03g12952 Brassica carinata HOM05D011214 ORTHO05D007661 3.3e-09 67.4 333 27.6
BcaB05g21770 Brassica carinata HOM05D011214 ORTHO05D007661 5.7e-09 66.6 390 28.5
A10p31950 Brassica napus HOM05D011214 ORTHO05D007661 5.7e-09 66.6 393 26.0
BraA10t45239Z Brassica rapa HOM05D011214 ORTHO05D007661 5.7e-09 66.6 393 26.0
PGR119G1217 Punica granatum HOM05D002654 ORTHO05D002430 7.4e-09 66.2 378 27.8
BcaC06g32122 Brassica carinata HOM05D011214 ORTHO05D007661 9.7e-09 65.9 392 29.3
BolC2t06140H Brassica oleracea HOM05D011214 ORTHO05D007661 9.7e-09 65.9 337 27.0
COL.COLO4_05647 Corchorus olitorius HOM05D007561 ORTHO05D007661 9.7e-09 65.9 257 33.1
Gohir.A03G098250 Gossypium hirsutum HOM05D002654 ORTHO05D002430 9.7e-09 65.9 430 27.4
Gohir.A12G105550 Gossypium hirsutum HOM05D002654 ORTHO05D002430 9.7e-09 65.9 430 27.4
CSS0046015 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 1.7e-08 65.1 449 24.5
BolC9t60006H Brassica oleracea HOM05D011214 ORTHO05D007661 3.7e-08 63.9 392 27.6
Nn3g17221 Nelumbo nucifera HOM05D002654 ORTHO05D002430 3.7e-08 63.9 375 28.0
CSS0017824 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 8.2e-08 62.8 449 24.3
CDE02G3247 Ceratophyllum demersum HOM05D044834 ORTHO05D007661 1.1e-07 62.4 324 27.2
COL.COLO4_23006 Corchorus olitorius HOM05D002654 ORTHO05D002430 1.1e-07 62.4 360 27.8
Gorai.005G141100 Gossypium raimondii HOM05D002654 ORTHO05D002430 1.4e-07 62.0 430 25.8
C09p72660 Brassica napus HOM05D011214 ORTHO05D007661 1.8e-07 61.6 392 27.0
CDE09G0510 Ceratophyllum demersum HOM05D044076 ORTHO05D007661 1.8e-07 61.6 319 25.7
Nn4g23142 Nelumbo nucifera HOM05D002654 ORTHO05D002430 2.4e-07 61.2 328 27.1
MBI14_g08053_MAGBIO Magnolia biondii HOM05D007561 ORTHO05D007661 4.1e-07 60.5 111 43.2
CDE04G0982 Ceratophyllum demersum HOM05D007561 ORTHO05D007661 5.3e-07 60.1 431 23.7
Psat4g139400 Pisum sativum HOM05D002654 ORTHO05D002430 5.3e-07 60.1 116 42.2
CiPaw.05G136200 Carya illinoinensis HOM05D002654 ORTHO05D002430 9.1e-07 59.3 381 27.0
CAN.G58.27 Capsicum annuum HOM05D002654 ORTHO05D002430 1.2e-06 58.9 390 25.4
CDE08G0002 Ceratophyllum demersum HOM05D044076 ORTHO05D007661 1.2e-06 58.9 279 27.6
RcHm_v2.0_Chr4g0439931 Rosa chinensis HOM05D002654 ORTHO05D002430 1.2e-06 58.9 363 27.5
Peaxi162Scf00541g00022 Petunia axillaris HOM05D002654 ORTHO05D002430 1.6e-06 58.5 426 26.1
Thecc.02G347200 Theobroma cacao HOM05D002654 ORTHO05D002430 2.0e-06 58.2 381 25.7
MELO3C012089.2 Cucumis melo HOM05D002654 ORTHO05D002430 2.6e-06 57.8 182 30.8
FAN17G2513 Fragaria x ananassa HOM05D002654 ORTHO05D002430 2.6e-06 57.8 360 29.4
ClCG05G024340 Citrullus lanatus HOM05D002654 ORTHO05D002430 3.5e-06 57.4 164 33.5
Sed0008815 Sechium edule HOM05D002654 ORTHO05D002430 3.5e-06 57.4 79 44.3
Ca_24217_v3 Cicer arietinum L. HOM05D002654 ORTHO05D002430 5.9e-06 56.6 175 32.0
FvH4_4g31450 Fragaria vesca HOM05D002654 ORTHO05D002430 5.9e-06 56.6 363 28.7
Oeu054883.1 Olea europaea HOM05D002654 ORTHO05D002430 5.9e-06 56.6 99 44.4
TAR371G1053 Trochodendron aralioides HOM05D002654 ORTHO05D002430 5.9e-06 56.6 386 27.2
TAR629G0269 Trochodendron aralioides HOM05D002654 ORTHO05D002430 5.9e-06 56.6 310 26.8
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 7.7e-06 56.2 382 24.6
FAN22G0634 Fragaria x ananassa HOM05D002654 ORTHO05D002430 7.7e-06 56.2 360 29.4
VMungo0464G1428 Vigna mungo HOM05D025134 ORTHO05D020753 7.7e-06 56.2 253 27.3


User provided reference genes

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