Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 0.0e+00 1651.7 872 100.0
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 2.5e-50 204.9 973 29.0
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 3.3e-50 204.5 987 29.0
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 6.1e-49 200.3 987 29.5
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 5.4e-45 187.2 963 28.0
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 7.0e-45 186.8 978 28.3
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 4.6e-44 184.1 1027 27.3
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 1.3e-43 182.6 972 28.3
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 5.0e-43 180.6 1040 27.7
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 4.3e-42 177.6 1031 26.2
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 2.8e-41 174.9 778 29.7
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 1.2e-39 169.5 994 27.1
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 2.2e-38 165.2 925 25.6
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 1.2e-36 159.5 983 25.9
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 6.0e-36 157.1 1012 26.2
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 3.9e-35 154.5 738 26.0
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 3.9e-35 154.5 1059 27.1
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 8.6e-35 153.3 590 30.0
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 2.5e-34 151.8 946 26.7
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 5.6e-34 150.6 761 28.6
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.6e-33 149.1 429 35.0
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 6.2e-33 147.1 928 28.1
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 8.1e-33 146.7 537 30.9
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 1.1e-32 146.4 738 28.2
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 3.1e-32 144.8 1034 25.9
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 3.1e-32 144.8 442 33.0
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 3.1e-32 144.8 942 25.4
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 6.8e-32 143.7 400 33.5
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 2.6e-31 141.7 938 27.3
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 4.4e-31 141.0 1036 25.8
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 3.7e-30 137.9 986 25.8
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 7.1e-29 133.7 994 26.3
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 1.2e-28 132.9 1132 24.6
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 1.6e-28 132.5 234 38.9
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 2.7e-28 131.7 795 27.3
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 1.0e-27 129.8 412 32.3
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.3e-27 129.4 1130 24.5
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 1.7e-27 129.0 882 26.6
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.7e-27 129.0 421 32.8
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 6.6e-27 127.1 1054 25.8
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 8.6e-27 126.7 963 24.9
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 1.5e-26 125.9 329 34.7
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 3.3e-26 124.8 989 25.8
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 5.6e-26 124.0 850 25.4
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 7.3e-26 123.6 233 39.1
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 9.5e-26 123.2 982 24.6
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.1e-25 122.1 888 25.5
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 2.1e-25 122.1 765 26.9
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.8e-25 121.7 779 26.3
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 3.6e-25 121.3 1126 24.3
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 1.4e-24 119.4 232 41.4
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.4e-24 118.6 297 36.0
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 3.1e-24 118.2 980 26.7
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 5.2e-24 117.5 819 24.9
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 8.9e-24 116.7 972 25.0
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 1.2e-23 116.3 1008 24.6
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 2.6e-23 115.2 991 24.7
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 2.6e-23 115.2 1014 24.3
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 4.4e-23 114.4 147 48.3
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 4.4e-23 114.4 411 32.8
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 5.8e-23 114.0 945 25.1
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 7.6e-23 113.6 965 26.0
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 2.2e-22 112.1 932 26.5
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 2.2e-22 112.1 770 26.6
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.1e-21 109.8 1183 24.5
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 1.1e-21 109.8 810 25.2
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.4e-21 109.4 922 25.6
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 3.2e-21 108.2 146 43.8
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 3.2e-21 108.2 721 24.8
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 3.2e-21 108.2 985 24.0
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 4.2e-21 107.8 932 25.6
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 5.4e-21 107.5 164 43.3
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 3.5e-20 104.8 954 25.2
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.7e-19 102.4 405 31.4
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.3e-19 102.1 522 28.4
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.1e-18 99.8 766 25.7
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 2.5e-18 98.6 717 25.7
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 3.3e-18 98.2 273 35.2
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 1.6e-17 95.9 156 40.4
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 2.8e-17 95.1 938 25.2
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 6.2e-17 94.0 332 31.0
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 1.1e-16 93.2 876 24.4
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.1e-16 91.7 897 24.4
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 3.1e-16 91.7 258 31.4
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 2.0e-15 89.0 259 33.6
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 3.4e-15 88.2 131 42.7
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 4.4e-15 87.8 326 32.2
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.4e-15 87.8 801 23.8
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 7.6e-15 87.0 948 23.6
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 7.6e-15 87.0 222 34.7
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 2.9e-14 85.1 222 32.9
Actinidia24785 Actinidia chinensis HOM05D005839 ORTHO05D005686 6.4e-14 84.0 299 31.8
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 8.4e-14 83.6 245 32.7
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.9e-13 82.4 821 22.9
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 9.3e-13 80.1 848 25.2
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 2.3e-11 75.5 183 31.7
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 3.9e-11 74.7 117 38.5
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 3.9e-11 74.7 302 30.1
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 5.1e-11 74.3 188 33.0
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 1.5e-10 72.8 190 31.1
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 1.5e-10 72.8 263 32.7
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 2.5e-10 72.0 114 38.6
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 7.3e-10 70.5 114 37.7
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 7.3e-10 70.5 114 37.7
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 7.3e-10 70.5 125 40.0
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 9.6e-10 70.1 376 25.3
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 2.1e-09 68.9 114 37.7
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 2.8e-09 68.6 117 41.0
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 3.6e-09 68.2 258 31.0
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 8.1e-09 67.0 52 53.8
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 8.1e-09 67.0 757 23.2
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 1.4e-08 66.2 114 39.5
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 4.0e-08 64.7 232 29.7
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 4.0e-08 64.7 120 38.3
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 6.9e-08 63.9 757 23.1
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 2.0e-07 62.4 369 26.6
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.0e-07 62.4 271 30.6
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 4.5e-07 61.2 120 37.5
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 1.7e-06 59.3 811 22.9


User provided reference genes

Program Settings