Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 1.4e-232 809.3 422 100.0
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 4.8e-116 422.2 412 55.8
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 6.3e-116 421.8 416 53.6
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 2.7e-111 406.4 417 52.0
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 6.7e-110 401.7 418 52.6
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 4.8e-108 395.6 419 50.4
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 4.1e-107 392.5 412 51.2
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 7.7e-106 388.3 417 51.3
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 3.8e-105 386.0 419 51.3
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 2.5e-104 383.3 414 49.0
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 5.5e-104 382.1 418 50.5
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 4.0e-102 375.9 426 49.1
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 3.3e-101 372.9 419 50.1
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 1.4e-99 367.5 419 49.6
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 5.3e-99 365.5 419 49.6
AUR62020846 Chenopodium quinoa HOM05D006138 ORTHO05D007778 3.8e-97 359.4 380 51.3
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 8.5e-97 358.2 416 48.6
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 1.9e-96 357.1 416 48.8
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 3.2e-96 356.3 387 50.4
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 4.2e-96 355.9 564 38.7
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 8.0e-95 351.7 423 44.9
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 2.3e-94 350.1 414 46.4
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 5.2e-94 349.0 409 46.5
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 1.5e-93 347.4 539 39.0
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 2.6e-93 346.7 418 45.5
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 4.4e-93 345.9 414 46.6
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 5.7e-93 345.5 449 45.0
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 1.3e-92 344.4 414 46.4
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 1.8e-91 340.5 405 46.4
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 9.1e-91 338.2 416 45.7
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 1.6e-90 337.4 416 46.2
DCAR_026640 Daucus carota HOM05D006138 ORTHO05D007778 2.7e-90 336.7 404 46.3
Nitab4.5_0000401g0220 Nicotiana tabacum HOM05D006138 ORTHO05D007778 4.5e-90 335.9 417 45.1
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 1.7e-89 334.0 417 46.5
Manes.15G055900 Manihot esculenta HOM05D006138 ORTHO05D007778 2.9e-89 333.2 364 47.8
Lj6A407G21 Lonicera japonica HOM05D006138 ORTHO05D007778 6.6e-89 332.0 448 44.0
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 6.6e-89 332.0 410 45.4
Ah.04g149320 Amaranthus hybridus HOM05D006138 ORTHO05D007778 3.3e-88 329.7 403 49.9
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 4.2e-88 329.3 420 45.0
PSO017G1394 Papaver somniferum HOM05D006138 ORTHO05D007778 2.3e-86 323.6 415 44.8
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 4.0e-86 322.8 417 45.1
HanXRQChr07g0185891 Helianthus annuus HOM05D006138 ORTHO05D007778 5.2e-86 322.4 403 44.9
CAN.G1565.12 Capsicum annuum HOM05D006138 ORTHO05D007778 8.9e-86 321.6 359 48.2
vmacro15559 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 1.2e-85 321.2 428 42.1
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 1.5e-85 320.9 409 42.8
MSTRG.9735 Avicennia marina HOM05D006138 ORTHO05D007778 2.0e-85 320.5 412 44.2
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 3.4e-85 319.7 414 45.4
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 4.4e-85 319.3 419 44.9
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 5.7e-85 318.9 417 43.9
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 4.9e-84 315.8 419 44.6
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 8.3e-84 315.1 419 43.9
SalBow8G0822 Salvia bowleyana HOM05D006138 ORTHO05D007778 1.4e-83 314.3 439 43.7
SalBow8G2056 Salvia bowleyana HOM05D006138 ORTHO05D007778 1.8e-83 313.9 439 43.7
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 3.5e-82 309.7 426 43.9
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 5.9e-82 308.9 420 45.5
Solyc09g092180.3 Solanum lycopersicum HOM05D006138 ORTHO05D007778 2.3e-81 307.0 403 41.9
Sopen09g035050 Solanum pennellii HOM05D006138 ORTHO05D007778 2.3e-81 307.0 403 42.7
Nitab4.5_0003101g0010 Nicotiana tabacum HOM05D006138 ORTHO05D007778 5.0e-81 305.8 417 43.2
SGA_v2.0_scaffold19G08768 Striga asiatica HOM05D006138 ORTHO05D007778 1.9e-80 303.9 419 40.6
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 3.3e-80 303.1 424 43.4
Migut.G00745 Erythranthe guttata HOM05D006138 ORTHO05D007778 4.3e-80 302.8 411 43.3
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 5.6e-80 302.4 426 43.0
Thhalv10002763m.g Eutrema salsugineum HOM05D006138 ORTHO05D007778 7.3e-80 302.0 347 48.4
PGSC0003DMG400026422 Solanum tuberosum HOM05D006138 ORTHO05D007778 2.1e-79 300.4 363 45.2
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 1.8e-78 297.4 374 45.7
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 1.8e-78 297.4 407 41.8
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 5.8e-77 292.4 416 44.5
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 9.8e-77 291.6 523 36.9
Aqoxy2G04005 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 6.0e-74 282.3 402 41.5
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 1.3e-73 281.2 397 41.3
CSS0014339 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 5.0e-73 279.3 255 56.5
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 1.9e-72 277.3 386 43.5
CSS0015025 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 1.9e-72 277.3 255 56.5
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 3.3e-72 276.6 412 38.3
Aqoxy360s001 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 7.3e-72 275.4 364 44.8
PSO063G4547 Papaver somniferum HOM05D006138 ORTHO05D007778 9.5e-72 275.0 379 42.0
VMungo1383G1063 Vigna mungo HOM05D000127 ORTHO05D000243 3.6e-71 273.1 412 40.3
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 1.1e-70 271.6 387 42.6
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 1.1e-70 271.6 552 36.4
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 2.3e-70 270.4 389 41.1
CDE05G2116 Ceratophyllum demersum HOM05D006138 ORTHO05D007778 4.0e-70 269.6 355 43.9
Phvul.001G267400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 4.0e-70 269.6 367 42.8
Glyma.11G255500 Glycine max HOM05D006138 ORTHO05D007778 1.7e-68 264.2 405 38.3
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 5.1e-65 252.7 398 35.9
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 1.1e-64 251.5 388 41.2
arahy.Tifrunner.gnm1.ann1.HYZ2KB Arachis hypogaea HOM05D006138 ORTHO05D007778 6.2e-63 245.7 405 38.5
arahy.Tifrunner.gnm1.ann1.3M33GA Arachis hypogaea HOM05D006138 ORTHO05D007778 8.1e-63 245.4 405 38.8
Lalb_Chr23g0278421 Lupinus albus HOM05D006138 ORTHO05D007778 4.4e-61 239.6 348 41.1
HPP92_023190 Vanilla planifolia HOM05D006138 ORTHO05D007778 3.2e-59 233.4 412 37.9
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 5.2e-54 216.1 281 46.3
Hund24401 Selenicereus undatus HOM05D006138 ORTHO05D007778 2.9e-52 210.3 254 46.1
Haze_11642 Corylus avellana HOM05D006138 ORTHO05D007778 3.9e-49 199.9 383 37.1
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 8.7e-49 198.7 279 44.4
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 1.1e-48 198.4 302 42.1
Glyma.18G001700 Glycine max HOM05D006138 ORTHO05D007778 6.2e-47 192.6 244 43.4
Os04g0379800 Oryza sativa ssp. japonica HOM05D006138 ORTHO05D007778 2.6e-45 187.2 417 31.4
unitig_37.g12032 Utricularia gibba HOM05D006138 ORTHO05D007778 2.6e-45 187.2 255 42.0
Ciclev10005758m.g Citrus clementina HOM05D006138 ORTHO05D007778 4.4e-45 186.4 170 51.8
FAN12G1205 Fragaria x ananassa HOM05D006138 ORTHO05D007778 2.4e-43 180.6 304 39.8
FvH4_4g13460 Fragaria vesca HOM05D006138 ORTHO05D007778 3.2e-43 180.3 303 39.6
Prupe.1G161100 Prunus persica HOM05D006138 ORTHO05D007778 5.4e-43 179.5 286 40.2
FAN22G1553 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.6e-42 177.9 303 39.9
TPR.G24162 Trifolium pratense HOM05D006138 ORTHO05D007778 4.6e-42 176.4 239 40.2
Gohir.D12G210200 Gossypium hirsutum HOM05D006138 ORTHO05D007778 2.1e-39 167.5 241 44.0
Oeu025032.1 Olea europaea HOM05D006138 ORTHO05D007778 2.7e-34 150.6 138 54.3
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 1.8e-33 147.9 260 39.2
Duzib268G1255 Durio zibethinus HOM05D006138 ORTHO05D007778 1.1e-30 138.7 136 52.9
FAN07G2199 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.9e-24 117.9 237 35.4
RcHm_v2.0_Chr4g0414071 Rosa chinensis HOM05D006138 ORTHO05D007778 2.0e-21 107.8 130 46.9
Nitab4.5_0001652g0120 Nicotiana tabacum HOM05D006138 ORTHO05D007778 4.9e-20 103.2 261 33.7
Zm00001eb085830 Zea mays HOM05D006138 ORTHO05D007778 6.5e-20 102.8 413 26.9
Actinidia16488 Actinidia chinensis HOM05D006138 ORTHO05D007778 4.2e-19 100.1 76 63.2
Nn1g00061 Nelumbo nucifera HOM05D006138 ORTHO05D007778 4.6e-18 96.7 159 37.7
Hund29337 Selenicereus undatus HOM05D006138 ORTHO05D007778 6.9e-14 82.8 123 41.5
Hund29338 Selenicereus undatus HOM05D006138 ORTHO05D007778 6.9e-14 82.8 123 41.5
Duzib268G0147 Durio zibethinus HOM05D006138 ORTHO05D007778 2.2e-12 77.8 131 38.2
Duzib268G0476 Durio zibethinus HOM05D006138 ORTHO05D007778 2.2e-12 77.8 131 38.2
Phvul.001G135400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 1.4e-11 75.1 97 43.3
FAN17G0457 Fragaria x ananassa HOM05D006138 ORTHO05D007778 2.1e-10 71.2 138 37.0
SHI01022 Sapria himalayana HOM05D006138 ORTHO05D007778 4.1e-06 57.0 75 40.0


User provided reference genes

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