Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 6.6e-202 707.2 374 100.0
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.9e-101 372.5 375 55.7
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 5.1e-101 372.1 373 55.8
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 5.6e-100 368.6 375 54.9
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 2.1e-99 366.7 384 54.9
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 8.1e-99 364.8 385 54.8
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 1.4e-98 364.0 370 55.9
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 7.6e-97 358.2 365 56.4
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 1.2e-94 350.9 382 53.9
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 2.1e-94 350.1 379 52.2
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 6.0e-94 348.6 380 52.4
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 8.7e-93 344.7 327 57.8
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 1.1e-92 344.4 382 50.8
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 4.3e-92 342.4 346 55.2
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 4.3e-92 342.4 381 51.4
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.1e-91 340.1 371 51.8
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 1.1e-90 337.8 371 51.5
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 2.4e-90 336.7 381 51.4
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 4.0e-90 335.9 371 53.4
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 9.0e-90 334.7 379 50.7
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 2.0e-89 333.6 373 51.5
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 9.9e-89 331.3 384 49.5
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 1.3e-88 330.9 381 50.9
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 1.7e-88 330.5 369 50.1
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.2e-88 330.1 374 50.8
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 8.4e-88 328.2 383 50.4
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 8.4e-88 328.2 369 50.9
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 4.2e-87 325.9 383 50.9
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 7.1e-87 325.1 369 50.4
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.2e-86 324.3 374 49.7
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 1.6e-86 323.9 373 51.2
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 3.5e-86 322.8 371 49.6
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 3.5e-86 322.8 378 49.5
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 3.5e-86 322.8 370 50.5
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 6.0e-86 322.0 379 50.4
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.0e-85 321.2 372 49.5
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 1.3e-85 320.9 373 48.8
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.7e-85 320.5 337 52.2
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 3.0e-85 319.7 367 49.0
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.1e-84 317.8 372 48.9
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 1.5e-84 317.4 381 48.8
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.3e-83 314.3 372 48.7
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 3.6e-83 312.8 377 47.5
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 4.8e-83 312.4 373 48.5
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 4.8e-83 312.4 373 48.5
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 1.4e-82 310.8 387 48.1
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 4.0e-82 309.3 345 51.0
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 6.9e-82 308.5 373 48.5
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 6.9e-82 308.5 375 47.5
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 4.5e-81 305.8 412 45.6
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 1.3e-80 304.3 384 48.4
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 2.2e-80 303.5 349 51.0
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 4.9e-80 302.4 373 47.5
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 4.9e-80 302.4 382 49.0
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 6.4e-80 302.0 368 48.9
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.4e-80 301.6 370 47.3
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 8.4e-80 301.6 366 47.8
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 1.4e-79 300.8 376 46.8
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 1.4e-79 300.8 380 47.1
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 1.4e-79 300.8 325 52.0
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.2e-79 299.3 370 47.6
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 9.3e-79 298.1 384 47.7
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 2.1e-78 297.0 356 49.2
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 2.1e-78 297.0 372 47.0
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 2.7e-78 296.6 334 50.6
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 4.6e-78 295.8 379 47.0
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 4.6e-78 295.8 360 48.6
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 4.6e-78 295.8 373 49.9
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.0e-78 295.4 358 46.6
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 6.0e-78 295.4 368 46.7
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 7.9e-78 295.0 379 47.0
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.0e-77 294.7 370 47.3
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 2.3e-77 293.5 363 46.0
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 3.9e-77 292.7 363 46.3
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 5.1e-77 292.4 371 46.6
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 8.7e-77 291.6 358 46.1
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.9e-76 290.4 325 49.5
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 2.5e-76 290.0 360 47.2
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.1e-75 287.0 358 45.8
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 3.7e-75 286.2 376 46.0
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 4.8e-75 285.8 365 46.3
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 6.2e-75 285.4 360 46.7
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 6.2e-75 285.4 364 45.9
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 8.1e-75 285.0 361 44.3
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 8.1e-75 285.0 373 47.5
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 1.8e-74 283.9 360 46.4
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 2.4e-74 283.5 374 47.6
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 4.0e-74 282.7 380 45.5
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 5.3e-74 282.3 360 47.8
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 9.0e-74 281.6 357 45.9
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.2e-73 281.2 369 44.7
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.2e-73 281.2 369 44.7
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.2e-73 281.2 373 45.8
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 1.2e-73 281.2 326 48.8
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 1.5e-73 280.8 371 45.8
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 2.0e-73 280.4 372 44.9
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 2.0e-73 280.4 360 46.1
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 2.0e-73 280.4 372 44.9
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 2.0e-73 280.4 383 45.4
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 9.9e-73 278.1 371 45.6
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 9.9e-73 278.1 371 45.6
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 9.9e-73 278.1 379 45.9
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 2.9e-72 276.6 371 45.3
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 6.4e-72 275.4 369 44.4
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 6.4e-72 275.4 369 44.4
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.4e-71 274.2 371 45.3
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 4.2e-71 272.7 371 46.9
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 4.2e-71 272.7 366 44.8
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 7.1e-71 271.9 369 45.8
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 7.1e-71 271.9 363 45.5
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 3.0e-69 266.5 369 43.9
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 3.9e-69 266.2 360 43.9
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 5.1e-69 265.8 363 44.4
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 8.7e-69 265.0 371 43.1
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 4.3e-68 262.7 279 52.7
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 5.6e-68 262.3 348 44.3
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 7.4e-68 261.9 364 42.6
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 9.6e-68 261.5 306 46.7
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 2.4e-66 256.9 403 41.9
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 3.4e-65 253.1 329 48.6
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 1.0e-64 251.5 339 44.0
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 3.8e-64 249.6 336 46.4
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 6.7e-61 238.8 349 40.7
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 1.1e-58 231.5 331 42.3
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 1.1e-58 231.5 374 40.9
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 2.3e-53 213.8 389 38.3
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 3.9e-53 213.0 292 44.5
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.1e-50 204.9 285 43.5
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 1.9e-47 194.1 329 38.9
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 2.9e-40 170.2 259 40.9
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 1.4e-37 161.4 202 44.1
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 8.8e-37 158.7 268 39.2
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.7e-35 154.5 157 52.9
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 7.7e-33 145.6 131 62.6
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 2.6e-28 130.6 130 53.8
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 4.8e-27 126.3 393 31.0
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 2.4e-26 124.0 391 30.4
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.0e-22 109.0 130 40.0
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.4e-20 103.6 135 40.7
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.3e-19 99.0 134 38.8
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.2e-17 95.1 129 38.8
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 1.6e-17 94.7 96 44.8
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 6.6e-16 89.4 388 27.6
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 5.5e-15 86.3 239 28.5
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 7.2e-15 85.9 377 26.3
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.0e-13 82.0 387 25.1
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 9.8e-12 75.5 128 30.5
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 3.7e-11 73.6 68 57.4
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 6.3e-11 72.8 68 57.4
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 1.1e-10 72.0 93 45.2
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.5e-09 66.6 71 42.3
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.5e-09 66.6 71 42.3
Oeu051052.1 Olea europaea HOM05D002428 ORTHO05D005085 1.7e-08 64.7 68 52.9
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 1.7e-08 64.7 60 53.3
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 6.6e-08 62.8 85 42.4
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 8.6e-08 62.4 79 46.8
Oeu022108.1 Olea europaea HOM05D002428 ORTHO05D005085 2.5e-07 60.8 56 55.4
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 3.6e-06 57.0 62 46.8


User provided reference genes

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