Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0011350 Simmondsia chinensis HOM05D007236 ORTHO05D009150 8.9e-134 480.3 251 100.0
Sc12g0011240 Simmondsia chinensis HOM05D000518 ORTHO05D000737 3.5e-130 468.4 246 99.6
AUR62025709 Chenopodium quinoa HOM05D007236 ORTHO05D009150 5.8e-101 371.3 244 77.5
Hund05669 Selenicereus undatus HOM05D007236 ORTHO05D009150 1.5e-96 356.7 246 76.0
Duzib160G0063 Durio zibethinus HOM05D007236 ORTHO05D009150 1.7e-92 343.2 244 71.7
Thecc.06G055000 Theobroma cacao HOM05D007236 ORTHO05D009150 2.2e-92 342.8 246 71.5
Prupe.3G024200 Prunus persica HOM05D007236 ORTHO05D009150 3.2e-91 339.0 244 71.7
GSVIVG01029561001 Vitis vinifera HOM05D007236 ORTHO05D009150 5.4e-91 338.2 246 71.5
Dinv20327 Davidia involucrata HOM05D007236 ORTHO05D009150 1.2e-90 337.0 246 72.4
Manes.06G179100 Manihot esculenta HOM05D007236 ORTHO05D009150 1.2e-90 337.0 241 73.9
Potri.008G003800 Populus trichocarpa HOM05D007236 ORTHO05D009150 3.5e-90 335.5 241 71.8
QL05p088536 Quercus lobata HOM05D007236 ORTHO05D009150 3.5e-90 335.5 245 71.4
MD09G1166500 Malus domestica HOM05D007236 ORTHO05D009150 4.6e-90 335.1 244 70.9
FAN05G3464 Fragaria x ananassa HOM05D007236 ORTHO05D009150 7.9e-90 334.3 244 71.3
TAR636G0504 Trochodendron aralioides HOM05D007236 ORTHO05D009150 3.0e-89 332.4 247 69.6
FAN09G1281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 3.9e-89 332.0 244 70.5
RcHm_v2.0_Chr2g0149221 Rosa chinensis HOM05D007236 ORTHO05D009150 3.9e-89 332.0 244 70.5
FvH4_6g36830 Fragaria vesca HOM05D007236 ORTHO05D009150 5.1e-89 331.6 244 70.5
FAN14G0281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 8.7e-89 330.9 244 70.5
Eucgr.J03184 Eucalyptus grandis HOM05D007236 ORTHO05D009150 1.9e-88 329.7 243 69.5
Lj3g0020822 Lotus japonicus HOM05D007236 ORTHO05D009150 7.3e-88 327.8 244 68.4
TWI18G0405 Tripterygium wilfordii HOM05D007236 ORTHO05D009150 9.6e-88 327.4 246 70.7
Aqoxy5G00022 Aquilegia oxysepala HOM05D007236 ORTHO05D009150 2.8e-87 325.9 248 67.7
Actinidia31123 Actinidia chinensis HOM05D007236 ORTHO05D009150 3.6e-87 325.5 240 71.2
Sabra08G0001500 Salix brachista HOM05D007236 ORTHO05D009150 4.8e-87 325.1 245 70.2
Gohir.A06G116300 Gossypium hirsutum HOM05D007236 ORTHO05D009150 8.1e-87 324.3 246 67.9
Medtr4g005300 Medicago truncatula HOM05D007236 ORTHO05D009150 8.1e-87 324.3 243 69.1
Psat7g265040 Pisum sativum HOM05D007236 ORTHO05D009150 1.1e-86 323.9 242 68.6
Nn5g27081 Nelumbo nucifera HOM05D007236 ORTHO05D009150 1.8e-86 323.2 247 69.2
Glyma.08G225400 Glycine max HOM05D007236 ORTHO05D009150 2.4e-86 322.8 244 67.6
Gohir.D06G121200 Gossypium hirsutum HOM05D007236 ORTHO05D009150 5.3e-86 321.6 251 66.1
VMungo0331G1697 Vigna mungo HOM05D007236 ORTHO05D009150 1.2e-85 320.5 244 68.0
Glyma.07G001600 Glycine max HOM05D007236 ORTHO05D009150 2.0e-85 319.7 244 67.2
arahy.Tifrunner.gnm1.ann1.I3AU87 Arachis hypogaea HOM05D007236 ORTHO05D009150 4.5e-85 318.5 242 69.8
arahy.Tifrunner.gnm1.ann1.QM8PPU Arachis hypogaea HOM05D007236 ORTHO05D009150 4.5e-85 318.5 242 69.8
AUR62001326 Chenopodium quinoa HOM05D007236 ORTHO05D009150 7.6e-85 317.8 244 68.9
Ca_20979_v3 Cicer arietinum L. HOM05D007236 ORTHO05D009150 2.2e-84 316.2 244 67.6
Gorai.010G141500 Gossypium raimondii HOM05D007236 ORTHO05D009150 3.8e-84 315.5 256 64.8
ECA234G1409 Erigeron canadensis HOM05D007236 ORTHO05D009150 5.4e-83 311.6 244 66.0
HanXRQChr10g0311241 Helianthus annuus HOM05D007236 ORTHO05D009150 9.3e-83 310.8 246 66.3
THA.LOC104812331 Tarenaya hassleriana HOM05D007236 ORTHO05D009150 4.6e-82 308.5 247 63.2
Lsat_1_v5_gn_5_137160 Lactuca sativa HOM05D007236 ORTHO05D009150 1.3e-81 307.0 244 64.3
Aa31LG4G2080 Aethionema arabicum HOM05D007236 ORTHO05D009150 1.8e-81 306.6 241 64.7
SGA_v2.0_scaffold71G23973 Striga asiatica HOM05D007236 ORTHO05D009150 1.8e-81 306.6 238 65.5
Solyc03g124030.4 Solanum lycopersicum HOM05D007236 ORTHO05D009150 2.3e-81 306.2 244 63.9
Sopen03g041760 Solanum pennellii HOM05D007236 ORTHO05D009150 2.3e-81 306.2 244 63.9
MELO3C026715.2 Cucumis melo HOM05D007236 ORTHO05D009150 8.7e-81 304.3 244 65.6
CsaV3_3G030460 Cucumis sativus L. HOM05D007236 ORTHO05D009150 1.1e-80 303.9 238 66.8
Carub.0002s2575 Capsella rubella HOM05D007236 ORTHO05D009150 1.5e-80 303.5 244 63.5
PGR031G2337 Punica granatum HOM05D007236 ORTHO05D009150 2.5e-80 302.8 248 64.1
CARHR072510 Cardamine hirsuta HOM05D007236 ORTHO05D009150 4.3e-80 302.0 234 65.8
Lalb_Chr01g0011631 Lupinus albus HOM05D007236 ORTHO05D009150 5.6e-80 301.6 219 71.2
AT1G78915 Arabidopsis thaliana HOM05D007236 ORTHO05D009150 7.4e-80 301.2 246 62.6
A07p27420 Brassica napus HOM05D007236 ORTHO05D009150 7.4e-80 301.2 244 64.3
Cc04_g00020 Coffea canephora HOM05D007236 ORTHO05D009150 7.4e-80 301.2 243 64.6
TPR.G38815 Trifolium pratense HOM05D007236 ORTHO05D009150 2.8e-79 299.3 258 62.8
ClCG07G014680 Citrullus lanatus HOM05D007236 ORTHO05D009150 3.7e-79 298.9 244 64.8
AL2G39340 Arabidopsis lyrata HOM05D007236 ORTHO05D009150 8.1e-79 297.7 244 62.7
BcaB02g07186 Brassica carinata HOM05D007236 ORTHO05D009150 1.1e-78 297.4 234 65.4
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 1.1e-78 297.4 244 63.1
Sp5g33940 Schrenkiella parvula HOM05D007236 ORTHO05D009150 1.4e-78 297.0 244 62.7
Oeu039939.2 Olea europaea HOM05D007236 ORTHO05D009150 2.6e-77 292.7 231 65.8
CDE05G3570 Ceratophyllum demersum HOM05D007236 ORTHO05D008204 4.5e-77 292.0 232 65.9
C06p30340 Brassica napus HOM05D007236 ORTHO05D009150 1.7e-76 290.0 252 61.1
BolC6t38197H Brassica oleracea HOM05D007236 ORTHO05D009150 3.8e-76 288.9 255 60.4
Haze_16198 Corylus avellana HOM05D007236 ORTHO05D009150 8.4e-76 287.7 276 58.7
COL.COLO4_31136 Corchorus olitorius HOM05D007236 ORTHO05D009150 1.9e-75 286.6 246 62.2
BraA07t30383Z Brassica rapa HOM05D007236 ORTHO05D009150 2.5e-75 286.2 242 62.4
DCAR_016079 Daucus carota HOM05D007236 ORTHO05D009150 2.5e-75 286.2 243 60.9
Sed0012172 Sechium edule HOM05D007236 ORTHO05D009150 7.1e-75 284.6 247 59.1
unitig_32.g11550 Utricularia gibba HOM05D007236 ORTHO05D009150 7.9e-74 281.2 238 56.3
Zm00001eb305180 Zea mays HOM05D007236 ORTHO05D009150 2.3e-73 279.6 248 57.3
Migut.I01208 Erythranthe guttata HOM05D007236 ORTHO05D009150 5.1e-73 278.5 234 65.0
CAN.G790.6 Capsicum annuum HOM05D007236 ORTHO05D009150 8.7e-73 277.7 202 69.3
Peaxi162Scf00038g02668 Petunia axillaris HOM05D007236 ORTHO05D009150 4.3e-72 275.4 213 63.8
vmacro12583 Vaccinium macrocarpon HOM05D007236 ORTHO05D009150 1.5e-69 266.9 248 58.1
SEGI_39602 Sequoiadendron giganteum HOM05D007236 ORTHO05D009150 9.3e-67 257.7 232 56.9
Rhsim02G0000100 Rhododendron simsii HOM05D007236 ORTHO05D009150 9.7e-64 247.7 311 47.3
ATR0215G005 Amborella trichopoda HOM05D007236 ORTHO05D009150 1.1e-62 244.2 228 56.6
SMO117G0135 Selaginella moellendorffii HOM05D007236 ORTHO05D009150 1.7e-52 210.3 254 46.5
PSO357G0009 Papaver somniferum HOM05D007236 ORTHO05D009150 5.0e-52 208.8 247 50.2
PSO170G4015 Papaver somniferum HOM05D007236 ORTHO05D009150 6.5e-52 208.4 253 49.8
Thhalv10018805m.g Eutrema salsugineum HOM05D007236 ORTHO05D009150 1.6e-50 203.8 242 49.2
Atru.chr1.2627 Acer truncatum HOM05D007236 ORTHO05D009150 3.9e-49 199.1 142 73.2
MSTRG.22498 Avicennia marina HOM05D007236 ORTHO05D009150 8.8e-49 198.0 244 46.3
Cpa.g.sc176.15 Carica papaya HOM05D007236 ORTHO05D009150 4.4e-48 195.7 216 53.2
CiPaw.01G207800 Carya illinoinensis HOM05D007236 ORTHO05D009150 4.4e-48 195.7 166 63.9
Pp3c5_19050 Physcomitrium patens HOM05D007236 ORTHO05D009150 3.5e-45 186.0 233 47.2
FAN02G2413 Fragaria x ananassa HOM05D007236 ORTHO05D009150 3.6e-42 176.0 244 45.5
Mapoly0075s0045 Marchantia polymorpha HOM05D007236 ORTHO05D009150 2.3e-41 173.3 250 41.2
Ciclev10013945m.g Citrus clementina HOM05D007236 ORTHO05D009150 1.4e-38 164.1 120 70.0
Lj9A543T71 Lonicera japonica HOM05D007236 ORTHO05D009150 1.4e-38 164.1 128 67.2
AagrBONN_evm.TU.Sc2ySwM_117.3884 Anthoceros agrestis HOM05D007236 ORTHO05D009150 1.8e-38 163.7 258 37.6
Ciclev10013942m.g Citrus clementina HOM05D007236 ORTHO05D009150 3.1e-38 162.9 128 66.4
Atru.chr1.2630 Acer truncatum HOM05D007236 ORTHO05D009150 3.5e-37 159.5 127 66.1
Nitab4.5_0000499g0120 Nicotiana tabacum HOM05D007236 ORTHO05D009150 3.2e-35 152.9 113 66.4
EL10Ac7g18131 Beta vulgaris HOM05D007236 ORTHO05D009150 4.0e-33 146.0 104 73.1
CANSAT01G0299 Cannabis sativa HOM05D007236 ORTHO05D009150 1.7e-31 140.6 109 67.0
Lj9A543T70 Lonicera japonica HOM05D007236 ORTHO05D009150 1.4e-30 137.5 99 70.7
PRCOL_00005889 Prasinoderma coloniale HOM05D007236 ORTHO05D009150 1.3e-28 131.0 247 36.0
CSS0013667 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 4.0e-25 119.4 81 72.8
Cre12.g554103 Chlamydomonas reinhardtii HOM05D007236 ORTHO05D009150 1.4e-17 94.4 77 54.5
MCO09G516 Micromonas commoda HOM05D007236 ORTHO05D009150 7.8e-13 78.6 243 31.3
Aa31sc24G50 Aethionema arabicum HOM05D002308 ORTHO05D002535 3.7e-07 59.7 57 49.1


User provided reference genes

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