Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 2.4e-32 141.7 80 100.0
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 2.8e-17 91.7 48 77.1
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 3.7e-17 91.3 48 79.2
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 6.3e-17 90.5 75 65.3
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 1.1e-16 89.7 74 56.8
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-16 89.7 74 56.8
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 1.4e-16 89.4 50 74.0
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 1.4e-16 89.4 49 75.5
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 1.4e-16 89.4 74 56.8
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 1.4e-16 89.4 75 54.7
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 2.4e-16 88.6 74 59.5
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.4e-16 88.6 74 62.2
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 2.4e-16 88.6 75 53.3
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 4.1e-16 87.8 48 75.0
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 7.0e-16 87.0 48 72.9
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 7.0e-16 87.0 50 72.0
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 7.0e-16 87.0 49 71.4
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 7.0e-16 87.0 50 72.0
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 7.0e-16 87.0 50 72.0
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 7.0e-16 87.0 50 72.0
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 7.0e-16 87.0 50 72.0
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 7.0e-16 87.0 50 72.0
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 7.0e-16 87.0 49 71.4
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 7.0e-16 87.0 75 54.7
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 7.0e-16 87.0 75 54.7
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 9.1e-16 86.7 75 52.0
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 9.1e-16 86.7 75 52.0
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 1.2e-15 86.3 50 70.0
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.2e-15 86.3 74 54.1
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.6e-15 85.9 72 62.5
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 1.6e-15 85.9 42 81.0
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 1.6e-15 85.9 42 81.0
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.6e-15 85.9 46 73.9
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.6e-15 85.9 48 72.9
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 2.0e-15 85.5 75 57.3
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 2.0e-15 85.5 75 66.7
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 2.6e-15 85.1 75 50.7
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 2.6e-15 85.1 75 50.7
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 3.5e-15 84.7 75 54.7
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 3.5e-15 84.7 75 50.7
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 3.5e-15 84.7 75 53.3
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 4.5e-15 84.3 75 52.0
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 5.9e-15 84.0 43 74.4
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 5.9e-15 84.0 52 65.4
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 5.9e-15 84.0 75 49.3
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 7.7e-15 83.6 46 73.9
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 7.7e-15 83.6 77 50.6
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.0e-14 83.2 48 68.8
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 1.0e-14 83.2 75 49.3
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 1.0e-14 83.2 75 53.3
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.0e-14 83.2 75 53.3
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.0e-14 83.2 75 53.3
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 1.3e-14 82.8 75 54.7
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.3e-14 82.8 77 49.4
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.3e-14 82.8 56 58.9
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.7e-14 82.4 48 68.8
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 2.2e-14 82.0 75 53.3
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.2e-14 82.0 46 67.4
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 2.2e-14 82.0 75 52.0
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.2e-14 82.0 55 60.0
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.2e-14 82.0 50 68.0
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 2.9e-14 81.6 75 49.3
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.9e-14 81.6 48 68.8
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 2.9e-14 81.6 75 53.3
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 2.9e-14 81.6 75 52.0
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.8e-14 81.3 75 52.0
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 3.8e-14 81.3 75 52.0
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 3.8e-14 81.3 75 50.7
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 5.0e-14 80.9 52 61.5
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 5.0e-14 80.9 78 50.0
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 6.5e-14 80.5 75 49.3
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 6.5e-14 80.5 78 44.9
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 8.5e-14 80.1 46 67.4
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 8.5e-14 80.1 46 67.4
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 8.5e-14 80.1 46 67.4
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 8.5e-14 80.1 58 58.6
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 8.5e-14 80.1 75 50.7
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 8.5e-14 80.1 77 48.1
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 8.5e-14 80.1 75 52.0
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-13 79.7 46 67.4
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-13 79.7 46 67.4
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-13 79.7 46 67.4
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-13 79.7 46 67.4
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 1.1e-13 79.7 46 67.4
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.1e-13 79.7 55 58.2
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.1e-13 79.7 75 48.0
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.5e-13 79.3 42 73.8
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 1.5e-13 79.3 76 51.3
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 1.5e-13 79.3 56 60.7
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 1.9e-13 79.0 75 49.3
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 1.9e-13 79.0 76 47.4
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 2.5e-13 78.6 75 49.3
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 2.5e-13 78.6 54 61.1
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 2.5e-13 78.6 75 48.0
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 2.5e-13 78.6 75 48.0
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 2.5e-13 78.6 75 48.0
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 3.2e-13 78.2 75 49.3
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.2e-13 78.2 75 48.0
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.2e-13 78.2 75 48.0
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 3.2e-13 78.2 75 50.7
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 4.2e-13 77.8 73 52.1
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.2e-13 77.8 75 48.0
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.2e-13 77.8 75 48.0
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 5.5e-13 77.4 56 57.1
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 5.5e-13 77.4 77 46.8
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 5.5e-13 77.4 75 50.7
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 5.5e-13 77.4 75 46.7
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 7.2e-13 77.0 75 49.3
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 7.2e-13 77.0 48 62.5
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 7.2e-13 77.0 42 71.4
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 9.4e-13 76.6 48 62.5
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 9.4e-13 76.6 74 48.6
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 9.4e-13 76.6 75 48.0
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 9.4e-13 76.6 79 48.1
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 9.4e-13 76.6 76 47.4
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 1.6e-12 75.9 49 65.3
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 1.6e-12 75.9 75 46.7
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 1.6e-12 75.9 75 46.7
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 2.1e-12 75.5 51 58.8
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 2.7e-12 75.1 75 48.0
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.7e-12 75.1 74 47.3
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 3.6e-12 74.7 73 47.9
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 3.6e-12 74.7 49 59.2
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 4.7e-12 74.3 42 71.4
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 6.1e-12 73.9 74 45.9
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 6.1e-12 73.9 74 45.9
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 8.0e-12 73.6 42 69.0
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.0e-11 73.2 43 67.4
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.0e-11 73.2 44 65.9
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 1.0e-11 73.2 75 46.7
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 1.8e-11 72.4 43 65.1
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.8e-11 72.4 42 69.0
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.8e-11 72.4 70 47.1
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 2.3e-11 72.0 75 45.3
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 3.0e-11 71.6 50 58.0
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 5.2e-11 70.9 42 66.7
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 6.7e-11 70.5 56 55.4
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 1.1e-10 69.7 75 44.0
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 1.5e-10 69.3 77 42.9
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 1.5e-10 69.3 56 51.8
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 4.4e-10 67.8 42 64.3
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 7.5e-10 67.0 38 65.8
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 1.3e-09 66.2 42 61.9
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 1.7e-09 65.9 67 49.3
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 4.8e-09 64.3 44 59.1
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 3.1e-08 61.6 67 46.3
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 4.5e-07 57.8 37 62.2
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 7.7e-07 57.0 57 50.9
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 1.7e-06 55.8 60 43.3


User provided reference genes

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