Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0011170 Simmondsia chinensis HOM05D003490 ORTHO05D032829 2.6e-106 388.7 188 100.0
DCAR_007671 Daucus carota HOM05D003490 ORTHO05D004835 1.2e-77 293.5 186 80.1
Duzib192G0250 Durio zibethinus HOM05D003490 ORTHO05D004835 5.7e-77 291.2 186 79.6
Sed0012993 Sechium edule HOM05D003490 ORTHO05D004835 5.7e-77 291.2 186 78.5
TWI75G0499 Tripterygium wilfordii HOM05D003490 ORTHO05D004835 5.7e-77 291.2 186 80.1
Cpa.g.sc155.13 Carica papaya HOM05D003490 ORTHO05D004835 7.5e-77 290.8 186 79.0
Glyma.07G002300 Glycine max HOM05D003490 ORTHO05D004835 7.5e-77 290.8 186 79.6
Gohir.A10G002200 Gossypium hirsutum HOM05D003490 ORTHO05D004835 7.5e-77 290.8 186 79.6
Gohir.D10G002200 Gossypium hirsutum HOM05D003490 ORTHO05D004835 7.5e-77 290.8 186 79.6
Gorai.011G002600 Gossypium raimondii HOM05D003490 ORTHO05D004835 7.5e-77 290.8 186 79.6
Manes.06G177500 Manihot esculenta HOM05D003490 ORTHO05D004835 7.5e-77 290.8 186 79.6
Nn8g40889 Nelumbo nucifera HOM05D003490 ORTHO05D004835 7.5e-77 290.8 186 79.6
TAR626G0762 Trochodendron aralioides HOM05D003490 ORTHO05D004835 9.7e-77 290.4 186 79.0
Gohir.A05G114800 Gossypium hirsutum HOM05D003490 ORTHO05D004835 1.7e-76 289.7 186 79.6
PGR102G0759 Punica granatum HOM05D003490 ORTHO05D004835 1.7e-76 289.7 186 80.1
Oeu049636.1 Olea europaea HOM05D003490 ORTHO05D004835 2.2e-76 289.3 186 79.6
Thecc.06G057300 Theobroma cacao HOM05D003490 ORTHO05D004835 2.2e-76 289.3 186 79.6
GSVIVG01029546001 Vitis vinifera HOM05D003490 ORTHO05D004835 2.2e-76 289.3 186 79.6
CAN.G308.15 Capsicum annuum HOM05D003490 ORTHO05D004835 2.8e-76 288.9 186 78.5
Glyma.08G224400 Glycine max HOM05D003490 ORTHO05D004835 2.8e-76 288.9 186 79.0
arahy.Tifrunner.gnm1.ann1.A6WMM1 Arachis hypogaea HOM05D003490 ORTHO05D004835 3.7e-76 288.5 186 79.0
arahy.Tifrunner.gnm1.ann1.EJI1J0 Arachis hypogaea HOM05D003490 ORTHO05D004835 3.7e-76 288.5 186 79.0
Dinv37778 Davidia involucrata HOM05D003490 ORTHO05D004835 3.7e-76 288.5 186 79.6
Gohir.D05G115200 Gossypium hirsutum HOM05D003490 ORTHO05D004835 3.7e-76 288.5 186 79.0
Gorai.009G119300 Gossypium raimondii HOM05D003490 ORTHO05D004835 3.7e-76 288.5 186 79.0
Solyc06g063330.3 Solanum lycopersicum HOM05D003490 ORTHO05D004835 4.8e-76 288.1 186 78.0
Sopen06g022800 Solanum pennellii HOM05D003490 ORTHO05D004835 4.8e-76 288.1 186 78.0
CSS0028180 Camellia sinensis var. sinensis HOM05D003490 ORTHO05D004835 6.3e-76 287.7 186 79.6
ClCG09G001630 Citrullus lanatus HOM05D003490 ORTHO05D004835 6.3e-76 287.7 186 78.0
Hma1.2p1_1111F.1_g258430 Hydrangea macrophylla HOM05D003490 ORTHO05D004835 6.3e-76 287.7 186 79.0
PGSC0003DMG400026502 Solanum tuberosum HOM05D003490 ORTHO05D004835 8.2e-76 287.3 186 78.0
Prupe.3G022700 Prunus persica HOM05D003490 ORTHO05D004835 1.1e-75 287.0 186 78.0
VMungo0331G0590 Vigna mungo HOM05D003490 ORTHO05D004835 1.4e-75 286.6 186 78.5
Cfa002154 Carpinus fangiana HOM05D003490 ORTHO05D004835 1.8e-75 286.2 186 78.5
Duzib235G1262 Durio zibethinus HOM05D003490 ORTHO05D004835 1.8e-75 286.2 186 78.5
Hma1.2p1_3612F.1_g337050 Hydrangea macrophylla HOM05D003490 ORTHO05D004835 1.8e-75 286.2 186 78.0
Lalb_Chr01g0011701 Lupinus albus HOM05D003490 ORTHO05D004835 1.8e-75 286.2 186 78.5
TAR383G0695 Trochodendron aralioides HOM05D003490 ORTHO05D004835 1.8e-75 286.2 186 79.0
Actinidia21886 Actinidia chinensis HOM05D003490 ORTHO05D004835 2.4e-75 285.8 186 79.6
Manes.14G008200 Manihot esculenta HOM05D003490 ORTHO05D004835 2.4e-75 285.8 186 79.0
CiPaw.01G091000 Carya illinoinensis HOM05D003490 ORTHO05D004835 3.1e-75 285.4 186 78.0
TWI18G1026 Tripterygium wilfordii HOM05D003490 ORTHO05D004835 3.1e-75 285.4 186 78.5
Actinidia38808 Actinidia chinensis HOM05D003490 ORTHO05D004835 4.1e-75 285.0 186 79.6
MD09G1165200 Malus domestica HOM05D003490 ORTHO05D004835 4.1e-75 285.0 186 77.4
MD17G1162700 Malus domestica HOM05D003490 ORTHO05D004835 4.1e-75 285.0 186 77.4
Phvul.010G163900 Phaseolus vulgaris HOM05D003490 ORTHO05D004835 4.1e-75 285.0 186 77.4
Duzib160G0715 Durio zibethinus HOM05D003490 ORTHO05D004835 5.3e-75 284.6 186 78.5
Ciclev10030969m.g Citrus clementina HOM05D003490 ORTHO05D004835 7.0e-75 284.3 186 77.4
Eucgr.J03179 Eucalyptus grandis HOM05D003490 ORTHO05D004835 7.0e-75 284.3 186 78.5
CANSAT01G2292 Cannabis sativa HOM05D003490 ORTHO05D004835 9.1e-75 283.9 186 78.0
SalBow6G0193 Salvia bowleyana HOM05D003490 ORTHO05D004835 9.1e-75 283.9 186 78.0
Sc15g0001120 Simmondsia chinensis HOM05D003490 ORTHO05D004835 9.1e-75 283.9 186 78.0
Aqoxy4G02358 Aquilegia oxysepala HOM05D003490 ORTHO05D004835 1.2e-74 283.5 186 75.8
Aqoxy7G02759 Aquilegia oxysepala HOM05D003490 ORTHO05D004835 1.2e-74 283.5 186 75.8
MELO3C024284.2 Cucumis melo HOM05D003490 ORTHO05D004835 1.2e-74 283.5 186 76.9
Dinv20336 Davidia involucrata HOM05D003490 ORTHO05D032829 1.2e-74 283.5 186 78.5
Lj3g0014966 Lotus japonicus HOM05D003490 ORTHO05D004835 1.2e-74 283.5 186 76.9
QL05p084430 Quercus lobata HOM05D003490 ORTHO05D004835 1.2e-74 283.5 186 77.4
QL05p084776 Quercus lobata HOM05D003490 ORTHO05D004835 1.2e-74 283.5 186 77.4
GSVIVG01035538001 Vitis vinifera HOM05D003490 ORTHO05D004835 1.2e-74 283.5 186 79.0
CsaV3_7G033710 Cucumis sativus L. HOM05D003490 ORTHO05D004835 1.6e-74 283.1 186 76.3
Nitab4.5_0002354g0050 Nicotiana tabacum HOM05D003490 ORTHO05D004835 1.6e-74 283.1 186 76.9
Nitab4.5_0003757g0110 Nicotiana tabacum HOM05D003490 ORTHO05D004835 1.6e-74 283.1 186 76.9
MSTRG.4524 Avicennia marina HOM05D003490 ORTHO05D004835 2.0e-74 282.7 186 77.4
Nitab4.5_0007548g0050 Nicotiana tabacum HOM05D003490 ORTHO05D004835 2.0e-74 282.7 186 76.9
Migut.D00889 Erythranthe guttata HOM05D003490 ORTHO05D004835 2.7e-74 282.3 186 78.0
Atru.chr1.2661 Acer truncatum HOM05D003490 ORTHO05D004835 3.5e-74 282.0 184 78.3
THA.LOC104808104 Tarenaya hassleriana HOM05D003490 ORTHO05D004835 3.5e-74 282.0 186 77.4
THA.LOC104812329 Tarenaya hassleriana HOM05D003490 ORTHO05D004835 3.5e-74 282.0 186 77.4
Eucgr.F04030 Eucalyptus grandis HOM05D003490 ORTHO05D004835 4.5e-74 281.6 186 78.0
Lj9A542G29 Lonicera japonica HOM05D003490 ORTHO05D004835 4.5e-74 281.6 186 76.9
PSO144G0044 Papaver somniferum HOM05D003490 ORTHO05D004835 4.5e-74 281.6 186 76.9
PSO170G3382 Papaver somniferum HOM05D003490 ORTHO05D004835 4.5e-74 281.6 186 76.9
Potri.008G005000 Populus trichocarpa HOM05D003490 ORTHO05D004835 4.5e-74 281.6 186 76.9
Potri.010G253500 Populus trichocarpa HOM05D003490 ORTHO05D004835 4.5e-74 281.6 186 77.4
Sabra08G0002500 Salix brachista HOM05D003490 ORTHO05D004835 4.5e-74 281.6 186 76.9
MSTRG.9558 Avicennia marina HOM05D003490 ORTHO05D004835 5.9e-74 281.2 186 76.3
FAN02G2379 Fragaria x ananassa HOM05D003490 ORTHO05D004835 5.9e-74 281.2 186 75.3
FAN05G5356 Fragaria x ananassa HOM05D003490 ORTHO05D004835 5.9e-74 281.2 186 75.3
Solyc12g055800.3 Solanum lycopersicum HOM05D003490 ORTHO05D004835 5.9e-74 281.2 186 76.9
Sopen12g024260 Solanum pennellii HOM05D003490 ORTHO05D004835 5.9e-74 281.2 186 76.9
PGSC0003DMG400028839 Solanum tuberosum HOM05D003490 ORTHO05D004835 7.7e-74 280.8 186 76.3
THA.LOC104813629 Tarenaya hassleriana HOM05D003490 ORTHO05D004835 7.7e-74 280.8 186 77.4
FvH4_6g37000 Fragaria vesca HOM05D003490 ORTHO05D004835 1.3e-73 280.0 186 74.7
FAN09G3564 Fragaria x ananassa HOM05D003490 ORTHO05D004835 1.3e-73 280.0 186 74.7
FAN14G5213 Fragaria x ananassa HOM05D003490 ORTHO05D004835 1.3e-73 280.0 186 74.7
Migut.I01199 Erythranthe guttata HOM05D003490 ORTHO05D004835 1.7e-73 279.6 186 76.9
Hund22442 Selenicereus undatus HOM05D003490 ORTHO05D004835 2.2e-73 279.3 182 76.9
HanXRQChr10g0311201 Helianthus annuus HOM05D003490 ORTHO05D004835 2.9e-73 278.9 186 75.8
HanXRQChr12g0359711 Helianthus annuus HOM05D003490 ORTHO05D004835 2.9e-73 278.9 186 75.8
Rhsim08G0250100 Rhododendron simsii HOM05D003490 ORTHO05D004835 2.9e-73 278.9 186 76.9
SGA_v2.0_scaffold71G23987 Striga asiatica HOM05D003490 ORTHO05D004835 3.8e-73 278.5 186 75.8
AUR62036002 Chenopodium quinoa HOM05D003490 ORTHO05D004835 5.0e-73 278.1 186 77.4
RcHm_v2.0_Chr2g0149541 Rosa chinensis HOM05D003490 ORTHO05D004835 5.0e-73 278.1 186 74.7
EL10Ac2g03529 Beta vulgaris HOM05D003490 ORTHO05D004835 6.5e-73 277.7 186 76.9
ECA234G0432 Erigeron canadensis HOM05D003490 ORTHO05D004835 1.5e-72 276.6 186 75.3
ECA234G3399 Erigeron canadensis HOM05D003490 ORTHO05D004835 1.5e-72 276.6 186 75.3
Cc04_g00160 Coffea canephora HOM05D003490 ORTHO05D004835 1.9e-72 276.2 186 75.3
Hma1.2p1_0517F.1_g170820 Hydrangea macrophylla HOM05D003490 ORTHO05D004835 5.5e-72 274.6 205 70.7
ATR0626G015 Amborella trichopoda HOM05D003490 ORTHO05D004835 7.2e-72 274.2 186 75.3
Psat7g265520 Pisum sativum HOM05D003490 ORTHO05D004835 7.2e-72 274.2 186 74.7
AUR62041619 Chenopodium quinoa HOM05D003490 ORTHO05D004835 9.4e-72 273.9 186 76.3
Sabra10G0197200 Salix brachista HOM05D003490 ORTHO05D004835 1.2e-71 273.5 203 70.4
MBI16_g34879_MAGBIO Magnolia biondii HOM05D003490 ORTHO05D004835 1.6e-71 273.1 186 76.3
CDE02G3722 Ceratophyllum demersum HOM05D003490 ORTHO05D004835 2.1e-71 272.7 186 74.7
vmacro18745 Vaccinium macrocarpon HOM05D003490 ORTHO05D004835 2.1e-71 272.7 198 73.2
Zm00001eb233450 Zea mays HOM05D003490 ORTHO05D004835 2.1e-71 272.7 182 76.4
Ca_20969_v3 Cicer arietinum L. HOM05D003490 ORTHO05D004835 3.6e-71 271.9 187 74.9
Aa31LG4G2100 Aethionema arabicum HOM05D003490 ORTHO05D004835 4.7e-71 271.6 186 74.2
Lsat_1_v5_gn_5_137221 Lactuca sativa HOM05D003490 ORTHO05D004835 4.7e-71 271.6 186 73.7
Lsat_1_v5_gn_4_89100 Lactuca sativa HOM05D003490 ORTHO05D004835 8.0e-71 270.8 186 73.7
Medtr4g005410 Medicago truncatula HOM05D003490 ORTHO05D004835 1.0e-70 270.4 187 74.3
Oeu038373.4 Olea europaea HOM05D003490 ORTHO05D004835 1.4e-70 270.0 216 67.6
SGA_v2.0_scaffold122G33265 Striga asiatica HOM05D003490 ORTHO05D004835 1.4e-70 270.0 205 68.8
Sp5g33920 Schrenkiella parvula HOM05D003490 ORTHO05D004835 6.8e-70 267.7 186 73.7
AL2G39320 Arabidopsis lyrata HOM05D003490 ORTHO05D004835 1.2e-69 266.9 186 73.7
Carub.0002s2573 Capsella rubella HOM05D003490 ORTHO05D004835 1.2e-69 266.9 186 73.7
Nitab4.5_0000357g0270 Nicotiana tabacum HOM05D003490 ORTHO05D004835 1.5e-69 266.5 206 68.4
Thhalv10018288m.g Eutrema salsugineum HOM05D003490 ORTHO05D004835 2.0e-69 266.2 186 74.2
Haze_16255 Corylus avellana HOM05D003490 ORTHO05D004835 2.6e-69 265.8 243 60.5
AT1G78900 Arabidopsis thaliana HOM05D003490 ORTHO05D004835 3.4e-69 265.4 186 73.7
BcaC08g45403 Brassica carinata HOM05D003490 ORTHO05D004835 3.4e-69 265.4 186 73.7
A07p27430 Brassica napus HOM05D003490 ORTHO05D004835 3.4e-69 265.4 186 73.7
C06p30350 Brassica napus HOM05D003490 ORTHO05D004835 3.4e-69 265.4 186 73.7
BolC6t38198H Brassica oleracea HOM05D003490 ORTHO05D004835 3.4e-69 265.4 186 73.7
BraA07t30384Z Brassica rapa HOM05D003490 ORTHO05D004835 3.4e-69 265.4 186 73.7
CARHR072490 Cardamine hirsuta HOM05D003490 ORTHO05D004835 3.4e-69 265.4 186 73.7
BcaB02g07185 Brassica carinata HOM05D003490 ORTHO05D004835 5.7e-69 264.6 186 73.1
BcaB03g16050 Brassica carinata HOM05D003490 ORTHO05D004835 5.7e-69 264.6 186 73.1
BcaC08g47444 Brassica carinata HOM05D003490 ORTHO05D004835 5.7e-69 264.6 186 73.1
A07p44070 Brassica napus HOM05D003490 ORTHO05D004835 5.7e-69 264.6 186 73.1
C06p52800 Brassica napus HOM05D003490 ORTHO05D004835 5.7e-69 264.6 186 73.1
BolC6t40297H Brassica oleracea HOM05D003490 ORTHO05D004835 5.7e-69 264.6 186 73.1
BraA07t31915Z Brassica rapa HOM05D003490 ORTHO05D004835 5.7e-69 264.6 186 73.1
SEGI_20998 Sequoiadendron giganteum HOM05D003490 ORTHO05D004835 2.2e-68 262.7 186 71.5
BcaC03g15855 Brassica carinata HOM05D003490 ORTHO05D004835 2.8e-68 262.3 186 73.1
A02p22410 Brassica napus HOM05D003490 ORTHO05D004835 2.8e-68 262.3 186 73.1
C02p36070 Brassica napus HOM05D003490 ORTHO05D004835 2.8e-68 262.3 186 73.1
BolC2t09622H Brassica oleracea HOM05D003490 ORTHO05D004835 2.8e-68 262.3 186 73.1
BraA02t07245Z Brassica rapa HOM05D003490 ORTHO05D004835 2.8e-68 262.3 186 73.1
BcaB05g25163 Brassica carinata HOM05D003490 ORTHO05D004835 4.8e-68 261.5 186 72.6
HPP92_010142 Vanilla planifolia HOM05D003490 ORTHO05D004835 1.4e-67 260.0 182 74.2
Os06g0662000 Oryza sativa ssp. japonica HOM05D003490 ORTHO05D004835 1.8e-67 259.6 180 73.9
Os02g0175400 Oryza sativa ssp. japonica HOM05D003490 ORTHO05D004835 7.0e-67 257.7 182 72.5
CSS0005058 Camellia sinensis var. sinensis HOM05D003490 ORTHO05D028416 8.6e-65 250.8 181 72.4
Peaxi162Scf00177g00618 Petunia axillaris HOM05D003490 ORTHO05D004835 3.2e-64 248.8 186 70.4
CAN.G390.38 Capsicum annuum HOM05D003490 ORTHO05D004835 9.5e-64 247.3 155 80.0
Ah.16g108080 Amaranthus hybridus HOM05D003490 ORTHO05D004835 8.0e-63 244.2 155 80.0
CDE06G2075 Ceratophyllum demersum HOM05D003490 ORTHO05D004835 2.3e-62 242.7 186 69.9
Pp3c8_10370 Physcomitrium patens HOM05D003490 ORTHO05D004835 2.2e-60 236.1 186 65.1
Aa31LG4G2210 Aethionema arabicum HOM05D003490 ORTHO05D004835 2.8e-60 235.7 181 68.5
BcaB08g35590 Brassica carinata HOM05D003490 ORTHO05D005034 3.7e-60 235.3 186 67.7
Pp3c20_16000 Physcomitrium patens HOM05D003490 ORTHO05D004835 4.9e-60 235.0 186 64.5
Pp3c23_8330 Physcomitrium patens HOM05D003490 ORTHO05D004835 1.1e-59 233.8 186 64.0
Mapoly0011s0112 Marchantia polymorpha HOM05D003490 ORTHO05D004835 7.0e-59 231.1 186 61.8
Zm00001eb206930 Zea mays HOM05D003490 ORTHO05D004835 4.5e-58 228.4 150 76.7
unitig_748.g7473 Utricularia gibba HOM05D003490 ORTHO05D004835 6.6e-57 224.6 186 64.5
CBR_g8589 Chara braunii HOM05D003490 ORTHO05D004835 3.3e-56 222.2 186 60.8
Hund19288 Selenicereus undatus HOM05D003490 ORTHO05D004835 1.2e-53 213.8 182 62.1
SMO351G0215 Selaginella moellendorffii HOM05D003490 ORTHO05D004835 6.4e-52 208.0 150 70.0
BcaB03g15562 Brassica carinata HOM05D003490 ORTHO05D032829 1.2e-50 203.8 142 74.6
Cre10.g461050 Chlamydomonas reinhardtii HOM05D003490 ORTHO05D004835 1.2e-45 187.2 170 58.8
PRCOL_00000884 Prasinoderma coloniale HOM05D003490 ORTHO05D004835 7.5e-45 184.5 180 54.4
MCO15G659 Micromonas commoda HOM05D003490 ORTHO05D004835 7.8e-42 174.5 176 54.0
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 2.8e-39 166.0 107 76.6
CDE05G1125 Ceratophyllum demersum HOM05D003490 ORTHO05D009397 2.6e-37 159.5 181 45.3
Haze_26600 Corylus avellana HOM05D003490 ORTHO05D004835 4.4e-37 158.7 180 43.9
Psat7g016880 Pisum sativum HOM05D003490 ORTHO05D009397 5.4e-35 151.8 178 50.6
Cfa023814 Carpinus fangiana HOM05D003490 ORTHO05D002242 1.2e-31 140.6 142 48.6
AagrBONN_evm.TU.Sc2ySwM_368.2488 Anthoceros agrestis HOM05D003490 ORTHO05D004835 1.5e-24 117.1 83 63.9
Psat7g142360 Pisum sativum HOM05D003490 ORTHO05D006323 1.2e-23 114.0 178 42.1
COL.COLO4_31156 Corchorus olitorius HOM05D003490 ORTHO05D004835 5.6e-16 88.6 54 83.3
BcaB04g17947 Brassica carinata HOM05D003490 ORTHO05D013026 1.4e-11 73.9 37 97.3
Aa31LG6G1740 Aethionema arabicum HOM05D001577 ORTHO05D003311 1.4e-06 57.4 94 39.4


User provided reference genes

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