Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 7.5e-255 883.6 541 100.0
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 1.6e-156 557.0 535 65.8
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 2.1e-156 556.6 543 68.5
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.4e-155 553.9 546 64.1
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 4.0e-155 552.4 532 61.8
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 8.8e-155 551.2 573 62.0
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 1.2e-154 550.8 560 63.2
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 3.1e-152 542.7 547 66.0
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 8.5e-150 534.6 571 62.0
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 3.2e-149 532.7 542 62.5
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 9.4e-149 531.2 575 61.6
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 1.6e-148 530.4 552 62.1
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 8.0e-148 528.1 560 60.9
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 1.4e-147 527.3 542 64.2
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 4.0e-147 525.8 564 64.7
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 5.2e-147 525.4 536 61.8
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 4.4e-146 522.3 569 62.4
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 5.7e-146 521.9 528 66.1
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 5.7e-146 521.9 540 65.0
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.1e-144 517.7 576 60.1
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 1.2e-143 514.2 577 59.8
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 3.5e-143 512.7 550 60.2
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 4.5e-143 512.3 483 70.0
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 5.9e-143 511.9 540 60.4
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 1.7e-142 510.4 562 62.1
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 2.5e-141 506.5 546 61.5
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 2.8e-140 503.1 557 59.8
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 2.3e-139 500.0 580 57.6
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 3.4e-138 496.1 530 61.5
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 5.7e-138 495.4 535 61.1
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 2.8e-137 493.0 562 56.8
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 3.7e-137 492.7 540 60.7
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 3.7e-137 492.7 565 57.0
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 4.9e-137 492.3 564 58.5
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 8.3e-137 491.5 535 60.4
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 2.0e-135 486.9 553 59.3
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 5.9e-135 485.3 533 58.9
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 7.8e-135 485.0 552 59.2
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 7.8e-135 485.0 534 62.5
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 2.3e-134 483.4 539 57.3
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 2.9e-134 483.0 551 56.6
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 5.0e-134 482.3 458 64.0
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 6.6e-134 481.9 530 59.4
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 1.5e-133 480.7 589 56.0
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 1.9e-133 480.3 530 59.2
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 2.5e-133 479.9 541 58.6
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 1.6e-132 477.2 457 67.0
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 6.1e-132 475.3 556 55.4
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 2.6e-130 469.9 518 59.3
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 2.6e-130 469.9 520 60.4
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 9.8e-130 468.0 530 59.4
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 1.7e-129 467.2 524 58.6
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 2.2e-129 466.8 555 58.2
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 8.3e-129 464.9 485 66.2
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 8.3e-129 464.9 513 59.8
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 3.2e-128 463.0 570 53.9
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 3.5e-127 459.5 477 59.7
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 7.8e-127 458.4 533 58.7
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 6.6e-126 455.3 542 60.3
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 1.1e-125 454.5 528 57.2
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 5.6e-125 452.2 581 56.6
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 1.6e-124 450.7 481 63.0
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 4.7e-124 449.1 600 51.3
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 6.2e-124 448.7 570 56.1
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 1.4e-123 447.6 535 57.0
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 1.4e-123 447.6 385 70.9
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 1.8e-123 447.2 579 56.5
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 1.8e-123 447.2 349 74.8
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 6.8e-123 445.3 531 57.4
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 8.9e-123 444.9 526 54.4
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 4.4e-122 442.6 491 61.5
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 4.4e-122 442.6 574 57.0
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 1.3e-121 441.0 488 62.1
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 1.3e-121 441.0 596 53.7
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 2.9e-121 439.9 530 54.5
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 9.2e-120 434.9 523 53.7
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.6e-119 434.1 517 54.0
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 2.0e-119 433.7 678 46.9
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 2.0e-119 433.7 534 53.7
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 2.7e-119 433.3 511 54.4
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 2.3e-118 430.3 474 61.6
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 5.0e-118 429.1 547 54.1
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 3.3e-117 426.4 572 53.8
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 3.6e-116 422.9 559 51.0
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 7.5e-114 415.2 348 69.3
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 7.5e-114 415.2 432 60.2
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 3.7e-113 412.9 552 52.4
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 4.9e-113 412.5 365 69.0
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 6.6e-110 402.1 550 49.3
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 8.6e-110 401.7 545 57.4
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 4.3e-109 399.4 547 53.0
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 7.3e-109 398.7 545 57.2
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 7.3e-109 398.7 545 57.2
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 2.8e-108 396.7 510 59.0
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 1.4e-107 394.4 544 57.5
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 3.1e-107 393.3 545 57.4
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 3.8e-105 386.3 562 54.3
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 3.9e-102 376.3 535 51.6
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 5.2e-99 365.9 435 58.2
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 3.8e-89 333.2 430 57.2
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 1.9e-88 330.9 531 49.2
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 2.4e-80 303.9 219 77.2
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 5.6e-77 292.7 228 67.5
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 5.6e-77 292.7 482 52.1
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 8.2e-76 288.9 194 76.3
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 1.9e-72 277.7 222 68.5
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 1.3e-68 265.0 352 57.1
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 1.9e-64 251.1 217 59.0
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 2.1e-63 247.7 217 59.4
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 1.0e-62 245.4 215 59.5
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 3.0e-62 243.8 246 52.4
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 4.5e-58 229.9 248 50.8
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 3.8e-57 226.9 299 46.8
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 6.3e-52 209.5 326 42.9
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 8.2e-52 209.1 216 52.8
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 4.7e-47 193.4 169 64.5
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 5.2e-46 189.9 217 52.1
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 3.7e-44 183.7 211 47.9
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 7.0e-43 179.5 255 43.1
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 1.6e-39 168.3 301 38.5
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 2.1e-39 167.9 233 42.5
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 1.3e-36 158.7 220 61.8
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 2.7e-31 141.0 105 72.4
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 2.8e-28 131.0 159 47.8
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 4.1e-27 127.1 195 43.6
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 5.9e-26 123.2 206 47.6
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.4e-22 112.1 66 78.8
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 7.0e-19 99.8 91 57.1
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 7.8e-18 96.3 74 68.9
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 7.3e-16 89.7 153 53.6
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 1.6e-15 88.6 133 43.6
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 3.6e-15 87.4 213 36.2
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 1.0e-14 85.9 104 58.7
Cpa.g.sc1515.1 Carica papaya HOM05D004479 ORTHO05D005597 1.5e-13 82.0 96 69.8
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 3.4e-13 80.9 157 39.5
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 2.9e-12 77.8 99 53.5
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 3.7e-12 77.4 264 34.1
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 3.7e-12 77.4 146 43.2
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 3.5e-10 70.9 47 78.7
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 7.8e-10 69.7 48 64.6
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 1.7e-09 68.6 40 80.0
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 2.3e-09 68.2 39 79.5
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 2.3e-09 68.2 39 79.5
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 2.3e-09 68.2 39 79.5
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 3.0e-09 67.8 103 50.5
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 5.0e-09 67.0 86 53.5
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 5.0e-09 67.0 44 68.2
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 5.0e-09 67.0 116 40.5
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 4.3e-08 63.9 42 76.2
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 4.3e-08 63.9 86 47.7
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.2e-07 62.4 60 51.7
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 1.2e-07 62.4 252 29.0
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 2.1e-07 61.6 107 38.3
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 6.2e-07 60.1 82 48.8
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 6.2e-07 60.1 82 48.8
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 6.2e-07 60.1 82 48.8
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 8.0e-07 59.7 113 37.2
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 1.4e-06 58.9 62 59.7
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 2.3e-06 58.2 48 66.7
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 4.0e-06 57.4 43 67.4


User provided reference genes

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