Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 6.1e-128 462.6 731 100.0
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 1.4e-55 222.2 213 56.8
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 9.9e-54 216.1 204 56.4
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 8.7e-50 203.0 201 54.2
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 1.5e-46 192.2 208 49.0
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 1.5e-46 192.2 212 48.6
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 1.7e-45 188.7 212 49.1
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 1.7e-45 188.7 208 49.0
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 8.4e-45 186.4 204 49.0
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 7.9e-43 179.9 182 51.1
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 8.7e-42 176.4 204 45.6
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 3.3e-41 174.5 196 50.0
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 7.4e-41 173.3 184 52.2
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 4.8e-40 170.6 196 49.0
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 2.4e-39 168.3 191 45.5
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 2.0e-38 165.2 214 43.5
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 2.0e-38 165.2 202 45.5
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 2.0e-38 165.2 201 46.3
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 2.6e-38 164.9 207 44.9
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 5.8e-38 163.7 188 47.3
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 5.8e-38 163.7 184 51.6
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 6.5e-37 160.2 187 47.6
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 3.2e-36 157.9 152 56.6
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 3.2e-36 157.9 211 43.6
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 3.2e-36 157.9 194 42.8
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 4.2e-36 157.5 218 45.9
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 1.6e-35 155.6 200 43.5
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.6e-35 155.6 170 47.1
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 2.7e-35 154.8 199 42.7
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 1.0e-34 152.9 215 45.6
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.3e-34 152.5 145 51.7
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.8e-34 152.1 211 45.0
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 5.1e-34 150.6 215 44.7
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.1e-33 149.4 205 42.9
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 4.3e-33 147.5 143 50.3
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 5.7e-33 147.1 176 44.9
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 7.4e-33 146.7 184 44.0
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 9.6e-33 146.4 207 39.6
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 3.7e-32 144.4 184 44.0
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 3.7e-32 144.4 153 51.0
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 1.8e-31 142.1 198 42.4
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 4.1e-31 141.0 184 42.9
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 5.3e-31 140.6 188 43.6
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 5.3e-31 140.6 207 39.1
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 6.9e-31 140.2 188 44.7
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 9.0e-31 139.8 197 42.1
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 2.0e-30 138.7 180 42.2
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 2.6e-30 138.3 193 38.9
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 1.0e-29 136.3 206 37.4
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 1.3e-29 136.0 194 40.2
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 1.7e-29 135.6 191 41.4
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 2.9e-29 134.8 198 41.9
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 2.9e-29 134.8 191 41.4
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 2.9e-29 134.8 205 40.5
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 2.9e-29 134.8 197 41.1
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 5.0e-29 134.0 152 47.4
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 6.5e-29 133.7 218 38.1
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 1.9e-28 132.1 211 38.9
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 3.2e-28 131.3 191 40.3
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 4.2e-28 131.0 210 41.0
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 1.2e-27 129.4 187 41.7
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 1.6e-27 129.0 143 44.8
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 2.7e-27 128.3 146 45.2
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 3.5e-27 127.9 186 40.9
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 6.1e-27 127.1 191 40.3
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 1.0e-26 126.3 194 39.2
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 1.0e-26 126.3 225 39.6
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 1.0e-26 126.3 206 38.8
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 1.3e-26 125.9 156 42.3
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 1.3e-26 125.9 153 45.1
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 1.8e-26 125.6 221 38.9
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 2.3e-26 125.2 151 42.4
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 2.3e-26 125.2 105 56.2
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 3.0e-26 124.8 217 35.0
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 6.7e-26 123.6 148 43.2
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 8.7e-26 123.2 154 43.5
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 3.3e-25 121.3 150 44.0
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 5.7e-25 120.6 209 38.3
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 7.4e-25 120.2 177 39.5
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 2.2e-24 118.6 154 42.9
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 2.8e-24 118.2 150 43.3
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 2.8e-24 118.2 150 43.3
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 8.2e-24 116.7 211 37.4
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 1.4e-23 115.9 215 33.5
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 1.8e-23 115.5 167 41.3
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 6.9e-23 113.6 138 42.0
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 1.2e-22 112.8 178 37.1
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 1.5e-22 112.5 194 36.6
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 2.6e-22 111.7 185 36.8
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 2.6e-22 111.7 149 41.6
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 3.8e-21 107.8 170 38.8
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 5.0e-21 107.5 202 34.2
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 6.5e-21 107.1 186 33.3
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 1.1e-20 106.3 146 39.7
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 3.2e-20 104.8 198 31.8
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 9.4e-20 103.2 155 40.6
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 1.2e-19 102.8 182 35.7
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 2.1e-19 102.1 90 53.3
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 2.1e-19 102.1 152 38.8
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 2.7e-19 101.7 210 33.8
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 6.1e-19 100.5 145 39.3
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.0e-18 99.8 185 31.9
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 1.4e-18 99.4 191 35.6
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 1.4e-18 99.4 171 38.0
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 3.0e-18 98.2 191 34.6
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 3.9e-18 97.8 214 33.2
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 5.1e-18 97.4 156 32.7
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 6.7e-18 97.1 138 41.3
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 8.8e-18 96.7 198 34.8
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 1.1e-17 96.3 175 36.6
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 1.3e-16 92.8 142 33.8
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 2.0e-14 85.5 180 33.3
BcaB08g37396 Brassica carinata HOM05D004824 ORTHO05D017526 8.5e-13 80.1 156 32.1
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 8.5e-13 80.1 101 43.6
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 1.4e-12 79.3 67 56.7
AUR62027511 Chenopodium quinoa HOM05D004824 ORTHO05D003903 7.2e-12 77.0 66 56.1
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 7.2e-12 77.0 114 37.7
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 1.6e-11 75.9 208 31.7
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 2.1e-11 75.5 207 29.0
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 6.1e-11 73.9 98 40.8
BcaB02g06478 Brassica carinata HOM05D004824 ORTHO05D003903 1.0e-10 73.2 162 29.6
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 1.8e-10 72.4 96 39.6
A06p09890 Brassica napus HOM05D004824 ORTHO05D003903 3.0e-10 71.6 167 28.7
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 3.0e-10 71.6 98 39.8
Zm00001eb413560 Zea mays HOM05D026208 ORTHO05D030341 6.7e-10 70.5 174 30.5
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 1.1e-09 69.7 93 37.6
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 1.1e-09 69.7 173 26.0
BraA06t24177Z Brassica rapa HOM05D004824 ORTHO05D003903 2.6e-09 68.6 157 29.3
BcaC05g25286 Brassica carinata HOM05D004824 ORTHO05D003903 7.4e-09 67.0 160 28.1
C05p11650 Brassica napus HOM05D004824 ORTHO05D003903 7.4e-09 67.0 160 28.1
BolC5t29912H Brassica oleracea HOM05D004824 ORTHO05D003903 7.4e-09 67.0 160 28.1
TWI12G0702 Tripterygium wilfordii HOM05D007358 ORTHO05D009117 1.3e-08 66.2 133 31.6
Glyma.18G262450 Glycine max HOM05D004824 ORTHO05D003903 1.7e-08 65.9 43 65.1
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.8e-08 65.1 145 29.0
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 6.3e-08 63.9 96 39.6
Glyma.07G217800 Glycine max HOM05D004824 ORTHO05D003903 8.2e-08 63.5 59 50.8
Atru.chr11.1049 Acer truncatum HOM05D007496 ORTHO05D009479 1.1e-07 63.2 144 31.9
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.1e-07 63.2 141 28.4
CiPaw.12G066600 Carya illinoinensis HOM05D007893 ORTHO05D010042 2.4e-07 62.0 225 24.4
COL.COLO4_16973 Corchorus olitorius HOM05D000070 ORTHO05D007358 2.4e-07 62.0 145 29.0
MD00G1180200 Malus domestica HOM05D007956 ORTHO05D010152 2.4e-07 62.0 141 25.5
PGR142G1723 Punica granatum HOM05D007358 ORTHO05D009117 2.4e-07 62.0 158 31.0
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 5.3e-07 60.8 128 29.7
Thhalv10006776m.g Eutrema salsugineum HOM05D007639 ORTHO05D009509 5.3e-07 60.8 154 27.3
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 5.3e-07 60.8 133 26.3
Rhsim09G0071100 Rhododendron simsii HOM05D007496 ORTHO05D009479 5.3e-07 60.8 143 30.1
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 5.3e-07 60.8 164 28.7
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 9.1e-07 60.1 143 32.2
Cfa014216 Carpinus fangiana HOM05D005764 ORTHO05D006600 9.1e-07 60.1 145 29.0
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 9.1e-07 60.1 145 31.7
Dinv28147 Davidia involucrata HOM05D007496 ORTHO05D009479 1.2e-06 59.7 141 29.8
Atru.BG.30.p Acer truncatum HOM05D007358 ORTHO05D009117 2.0e-06 58.9 171 28.1
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 2.0e-06 58.9 148 28.4
FAN17G2862 Fragaria x ananassa HOM05D007496 ORTHO05D009479 2.6e-06 58.5 147 28.6
SEGI_21882 Sequoiadendron giganteum HOM05D007750 ORTHO05D009431 2.6e-06 58.5 148 28.4
Carub.0007s1417 Capsella rubella HOM05D006931 ORTHO05D008782 3.5e-06 58.2 162 26.5
Thecc.03G306900 Theobroma cacao HOM05D007893 ORTHO05D010042 3.5e-06 58.2 139 29.5
Haze_12606 Corylus avellana HOM05D005764 ORTHO05D006600 4.5e-06 57.8 145 28.3
MELO3C010547.2 Cucumis melo HOM05D004824 ORTHO05D003903 4.5e-06 57.8 55 52.7
FvH4_4g36310 Fragaria vesca HOM05D007496 ORTHO05D009479 4.5e-06 57.8 147 28.6
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 5.9e-06 57.4 120 29.2
Haze_12617 Corylus avellana HOM05D005764 ORTHO05D006600 5.9e-06 57.4 145 28.3
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 5.9e-06 57.4 157 28.0
TWI75G0531 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 5.9e-06 57.4 128 28.9
TWI75G0860 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 5.9e-06 57.4 128 28.9
TWI75G1402 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 5.9e-06 57.4 128 28.9
TAR374G1349 Trochodendron aralioides HOM05D007893 ORTHO05D010042 5.9e-06 57.4 128 30.5
Lj2g0013463 Lotus japonicus HOM05D007358 ORTHO05D009117 7.7e-06 57.0 187 27.3
TPR.G27632 Trifolium pratense HOM05D004824 ORTHO05D003903 7.7e-06 57.0 71 38.0


User provided reference genes

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