Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 8.6e-86 320.5 184 100.0
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.9e-41 172.6 173 59.0
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.5e-40 169.5 120 74.2
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 1.3e-38 163.7 118 70.3
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.9e-37 159.8 174 61.5
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 5.3e-35 151.8 174 54.0
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 1.2e-34 150.6 177 56.5
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 4.5e-34 148.7 180 57.8
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 5.8e-34 148.3 125 64.0
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 5.8e-34 148.3 192 53.1
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 1.3e-33 147.1 175 54.9
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.2e-33 146.4 184 54.9
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 6.5e-33 144.8 177 55.4
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 8.4e-33 144.4 181 51.4
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 5.5e-32 141.7 178 57.9
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 7.2e-32 141.4 185 53.5
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 2.1e-31 139.8 121 65.3
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 6.1e-31 138.3 103 71.8
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 1.3e-30 137.1 174 56.3
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 1.8e-30 136.7 171 57.9
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 1.8e-30 136.7 176 58.0
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 1.8e-30 136.7 184 50.0
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 2.3e-30 136.3 176 58.0
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 2.3e-30 136.3 176 58.0
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 2.3e-30 136.3 122 63.9
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 3.0e-30 136.0 181 50.8
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 3.0e-30 136.0 122 62.3
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 3.9e-30 135.6 122 63.1
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 3.9e-30 135.6 181 51.9
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 3.9e-30 135.6 184 54.3
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 6.7e-30 134.8 125 58.4
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 8.7e-30 134.4 118 61.9
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 1.1e-29 134.0 173 55.5
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 1.1e-29 134.0 183 53.0
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 1.1e-29 134.0 175 52.0
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 1.5e-29 133.7 121 58.7
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 1.9e-29 133.3 121 61.2
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 2.5e-29 132.9 185 53.5
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 2.5e-29 132.9 122 63.1
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 3.3e-29 132.5 109 64.2
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 3.3e-29 132.5 121 59.5
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 3.3e-29 132.5 178 53.9
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 3.3e-29 132.5 114 60.5
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 5.7e-29 131.7 175 49.1
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 5.7e-29 131.7 199 52.8
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 5.7e-29 131.7 186 50.0
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 5.7e-29 131.7 183 54.6
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 7.4e-29 131.3 124 61.3
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 7.4e-29 131.3 184 48.4
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 9.7e-29 131.0 114 59.6
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 1.3e-28 130.6 179 56.4
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.3e-28 130.6 123 57.7
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 1.6e-28 130.2 178 54.5
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.6e-28 130.2 120 57.5
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 2.2e-28 129.8 118 58.5
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 3.7e-28 129.0 178 47.8
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 4.8e-28 128.6 181 47.0
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 4.8e-28 128.6 124 57.3
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 4.8e-28 128.6 125 55.2
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 4.8e-28 128.6 175 55.4
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 1.4e-27 127.1 173 54.3
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 1.8e-27 126.7 122 53.3
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 1.8e-27 126.7 124 53.2
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 3.1e-27 125.9 117 58.1
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 3.1e-27 125.9 184 52.2
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 5.3e-27 125.2 175 49.1
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 6.9e-27 124.8 123 55.3
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 9.0e-27 124.4 130 57.7
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 1.5e-26 123.6 119 57.1
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.5e-26 123.6 176 55.1
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 2.0e-26 123.2 125 56.0
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 2.6e-26 122.9 178 50.6
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.4e-26 122.5 177 48.6
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 5.9e-26 121.7 119 57.1
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 5.9e-26 121.7 95 65.3
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 7.7e-26 121.3 111 59.5
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.0e-25 120.9 175 49.1
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 1.0e-25 120.9 179 48.6
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 1.0e-25 120.9 177 45.8
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.0e-25 120.9 104 61.5
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.3e-25 120.6 177 46.3
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.3e-25 120.6 119 57.1
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 2.2e-25 119.8 177 46.3
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 2.9e-25 119.4 152 50.7
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 3.8e-25 119.0 188 50.5
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 6.5e-25 118.2 173 49.7
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 8.5e-25 117.9 179 52.5
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.4e-24 117.1 138 53.6
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 1.4e-24 117.1 150 56.7
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 1.9e-24 116.7 107 59.8
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 1.9e-24 116.7 123 52.8
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 3.2e-24 115.9 184 48.9
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 7.2e-24 114.8 111 55.9
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 7.2e-24 114.8 124 54.0
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 1.6e-23 113.6 179 52.5
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 2.7e-23 112.8 175 49.7
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 3.6e-23 112.5 188 48.4
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 7.9e-23 111.3 177 50.3
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 7.9e-23 111.3 176 44.3
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 7.9e-23 111.3 175 48.6
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 1.0e-22 110.9 107 57.9
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.0e-22 110.9 125 53.6
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 3.9e-22 109.0 121 51.2
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 1.5e-21 107.1 107 56.1
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.3e-21 105.9 129 48.1
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 5.7e-21 105.1 113 53.1
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 9.7e-21 104.4 126 51.6
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 2.2e-20 103.2 107 56.1
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 3.7e-20 102.4 145 52.4
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 3.7e-20 102.4 145 52.4
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 4.8e-20 102.1 93 60.2
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 8.2e-20 101.3 174 46.0
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 8.2e-20 101.3 184 46.2
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.8e-19 100.1 86 60.5
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 1.8e-19 100.1 82 64.6
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 1.8e-19 100.1 82 64.6
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 2.4e-19 99.8 98 58.2
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 3.1e-19 99.4 82 62.2
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 3.1e-19 99.4 82 62.2
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 3.1e-19 99.4 82 62.2
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 6.9e-19 98.2 74 64.9
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 6.9e-19 98.2 125 47.2
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 1.5e-18 97.1 82 62.2
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 2.6e-18 96.3 160 50.0
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 7.7e-18 94.7 82 59.8
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 7.7e-18 94.7 99 53.5
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 1.0e-17 94.4 82 59.8
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 1.0e-17 94.4 82 59.8
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 1.0e-17 94.4 82 59.8
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 1.7e-17 93.6 93 53.8
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 3.8e-17 92.4 106 50.9
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 3.8e-17 92.4 106 50.9
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 3.8e-17 92.4 106 50.9
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 5.0e-17 92.0 81 61.7
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 8.5e-17 91.3 148 52.0
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 3.6e-15 85.9 60 71.7
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.8e-14 83.6 64 67.2
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 3.0e-14 82.8 136 41.9
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 1.1e-13 80.9 225 40.0
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 3.3e-13 79.3 101 49.5
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 4.8e-12 75.5 120 40.8
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 2.4e-11 73.2 180 32.8
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 2.4e-11 73.2 64 54.7
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 4.1e-11 72.4 67 56.7
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.0e-10 70.1 46 69.6
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 4.5e-10 68.9 113 46.9
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 1.1e-08 64.3 92 42.4
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.5e-08 63.9 119 47.1
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 4.2e-08 62.4 46 63.0
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 2.7e-07 59.7 88 44.3
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.0e-06 57.8 141 33.3


User provided reference genes

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