Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 9.8e-73 277.3 216 100.0
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 2.4e-31 139.8 86 80.2
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 9.3e-31 137.9 86 80.2
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 2.1e-30 136.7 85 81.2
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 4.6e-30 135.6 86 77.9
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 7.9e-30 134.8 84 79.8
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 7.9e-30 134.8 86 77.9
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 1.0e-29 134.4 86 76.7
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 1.3e-29 134.0 86 76.7
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 3.0e-29 132.9 86 75.6
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 3.0e-29 132.9 86 74.4
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 3.0e-29 132.9 86 74.4
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 3.0e-29 132.9 84 79.8
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 5.1e-29 132.1 84 76.2
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 6.7e-29 131.7 86 75.6
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 8.7e-29 131.3 84 75.0
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 1.1e-28 131.0 86 75.6
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 1.5e-28 130.6 86 75.6
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.9e-28 130.2 86 72.1
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 1.9e-28 130.2 84 77.4
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 2.5e-28 129.8 84 76.2
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 4.3e-28 129.0 86 73.3
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 4.3e-28 129.0 86 72.1
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 7.4e-28 128.3 86 73.3
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 7.4e-28 128.3 86 75.6
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 2.1e-27 126.7 86 75.6
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 2.8e-27 126.3 86 70.9
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 2.8e-27 126.3 86 73.3
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 3.6e-27 125.9 86 75.6
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 3.6e-27 125.9 86 75.6
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 3.6e-27 125.9 86 73.3
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 6.2e-27 125.2 86 72.1
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 8.1e-27 124.8 86 73.3
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 1.1e-26 124.4 86 73.3
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.4e-26 124.0 86 74.4
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 1.4e-26 124.0 86 73.3
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 2.4e-26 123.2 84 71.4
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 2.4e-26 123.2 86 68.6
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.1e-26 122.9 86 72.1
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 3.1e-26 122.9 85 72.9
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 3.1e-26 122.9 86 72.1
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 3.1e-26 122.9 86 69.8
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 4.0e-26 122.5 84 72.6
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 4.0e-26 122.5 84 73.8
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 5.3e-26 122.1 86 70.9
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 5.3e-26 122.1 86 70.9
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 2.0e-25 120.2 85 71.8
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.4e-25 119.4 86 69.8
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 3.4e-25 119.4 84 69.0
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 4.5e-25 119.0 85 70.6
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 5.8e-25 118.6 86 66.3
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 9.9e-25 117.9 86 65.1
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 9.9e-25 117.9 86 69.8
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 9.9e-25 117.9 86 66.3
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 9.9e-25 117.9 84 67.9
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 1.3e-24 117.5 84 66.7
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.3e-24 117.5 86 69.8
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 1.3e-24 117.5 84 67.9
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 1.3e-24 117.5 86 69.8
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 1.7e-24 117.1 87 66.7
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 1.7e-24 117.1 84 67.9
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 2.2e-24 116.7 84 66.7
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 2.9e-24 116.3 83 67.5
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 3.8e-24 115.9 81 67.9
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 4.9e-24 115.5 87 65.5
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 4.9e-24 115.5 84 65.5
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 4.9e-24 115.5 84 65.5
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 1.1e-23 114.4 81 67.9
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 1.4e-23 114.0 81 67.9
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 1.4e-23 114.0 84 65.5
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 1.9e-23 113.6 87 64.4
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 2.4e-23 113.2 85 64.7
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 4.2e-23 112.5 87 63.2
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 5.5e-23 112.1 84 69.0
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 6.0e-22 108.6 81 63.0
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 8.7e-21 104.8 84 60.7
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 1.1e-20 104.4 73 72.6
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 5.6e-20 102.1 66 77.3
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 7.4e-20 101.7 66 75.8
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 1.3e-19 100.9 72 69.4
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 4.8e-19 99.0 67 73.1
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 6.2e-19 98.6 88 61.4
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 8.1e-19 98.2 66 72.7
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 1.4e-18 97.4 85 64.7
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 1.4e-18 97.4 85 64.7
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 1.8e-18 97.1 86 57.0
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 4.0e-18 95.9 86 53.5
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 4.0e-18 95.9 86 53.5
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 4.0e-18 95.9 86 53.5
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 2.6e-17 93.2 113 46.0
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 2.6e-17 93.2 99 54.5
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 3.4e-17 92.8 87 59.8
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 3.4e-17 92.8 80 61.2
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 7.6e-17 91.7 68 66.2
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 7.6e-17 91.7 68 66.2
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 3.8e-16 89.4 82 51.2
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 3.8e-16 89.4 82 51.2
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 4.9e-16 89.0 85 58.8
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 8.4e-16 88.2 83 54.2
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 1.9e-15 87.0 87 50.6
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 9.3e-15 84.7 84 51.2
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 2.1e-14 83.6 75 54.7
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 1.9e-12 77.0 49 71.4
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 1.6e-11 73.9 68 63.2
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 1.6e-11 73.9 68 63.2
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 2.1e-11 73.6 47 72.3
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 3.7e-11 72.8 67 59.7
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 8.2e-11 71.6 81 49.4
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 1.4e-10 70.9 78 47.4
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 1.8e-10 70.5 64 56.2
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 1.8e-10 70.5 86 48.8
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 3.1e-10 69.7 84 50.0
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 4.1e-10 69.3 72 52.8
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 6.9e-10 68.6 84 45.2
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 3.4e-09 66.2 53 62.3
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 3.4e-09 66.2 55 63.6
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 2.5e-07 60.1 87 39.1
Phvul.010G138400 Phaseolus vulgaris HOM05D006504 ORTHO05D007867 2.5e-07 60.1 39 76.9
Pp3c21_4920 Physcomitrium patens HOM05D006504 ORTHO05D007867 7.9e-06 55.1 84 38.1


User provided reference genes

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