Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 4.8e-129 464.5 241 100.0
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 4.0e-91 338.6 240 74.6
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 3.7e-81 305.4 243 68.7
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 4.9e-81 305.1 237 67.9
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 1.9e-80 303.1 293 60.8
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 4.0e-75 285.4 239 66.1
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 2.9e-73 279.3 243 62.6
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 6.4e-73 278.1 225 65.8
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 1.6e-71 273.5 238 64.7
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 5.1e-70 268.5 240 62.9
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 6.6e-70 268.1 232 63.4
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 1.1e-69 267.3 240 61.7
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 1.5e-69 266.9 240 62.5
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 1.9e-69 266.5 228 62.7
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 2.5e-69 266.2 224 63.4
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 2.5e-69 266.2 240 62.1
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 2.5e-69 266.2 230 63.9
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 4.3e-69 265.4 225 62.7
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 7.3e-69 264.6 218 65.1
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 7.3e-69 264.6 240 62.1
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 7.3e-69 264.6 237 63.3
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 7.3e-69 264.6 239 60.7
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 1.3e-68 263.8 243 60.9
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 2.8e-68 262.7 227 63.0
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 3.6e-68 262.3 240 62.5
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 6.2e-68 261.5 227 63.9
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 1.1e-67 260.8 223 63.7
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 1.4e-67 260.4 243 60.5
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 1.4e-67 260.4 233 61.4
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.4e-67 260.4 236 61.4
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 1.8e-67 260.0 233 62.7
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.8e-67 260.0 235 60.4
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 4.0e-67 258.8 214 65.4
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 9.0e-67 257.7 232 62.1
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 9.0e-67 257.7 232 62.1
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 9.0e-67 257.7 226 64.2
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.5e-66 256.9 236 60.6
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 2.6e-66 256.1 238 61.3
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 2.6e-66 256.1 245 58.8
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 3.4e-66 255.8 233 60.1
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 4.4e-66 255.4 236 59.3
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 4.4e-66 255.4 233 59.2
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 5.8e-66 255.0 228 62.7
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 1.3e-65 253.8 234 61.1
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 1.3e-65 253.8 234 61.1
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 1.3e-65 253.8 234 61.1
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 2.2e-65 253.1 235 60.4
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 2.2e-65 253.1 241 60.2
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 2.2e-65 253.1 234 62.4
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 2.2e-65 253.1 229 61.1
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 3.8e-65 252.3 240 59.6
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 6.4e-65 251.5 232 61.2
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 6.4e-65 251.5 240 60.4
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 8.4e-65 251.1 246 57.3
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.1e-64 250.8 237 58.6
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 1.1e-64 250.8 230 60.0
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 1.4e-64 250.4 234 60.3
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 4.2e-64 248.8 242 59.1
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 4.2e-64 248.8 246 56.9
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 5.4e-64 248.4 242 58.3
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 7.1e-64 248.1 228 61.8
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 1.2e-63 247.3 243 57.2
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 2.1e-63 246.5 227 59.5
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 2.7e-63 246.1 228 58.3
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 6.0e-63 245.0 224 61.2
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 6.0e-63 245.0 220 60.0
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.3e-62 243.8 238 57.6
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.3e-62 243.8 237 57.0
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.3e-62 243.8 227 59.5
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 1.7e-62 243.4 222 61.7
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 2.3e-62 243.0 243 56.8
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 3.9e-62 242.3 243 56.8
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 5.1e-62 241.9 225 59.6
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 1.9e-61 240.0 251 57.8
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 2.5e-61 239.6 240 55.4
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 3.3e-61 239.2 242 57.0
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 4.3e-61 238.8 239 54.8
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 7.4e-61 238.0 179 67.6
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 9.6e-61 237.7 153 74.5
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 4.8e-60 235.3 216 61.1
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 4.8e-60 235.3 276 51.1
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 8.1e-60 234.6 242 56.2
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 8.1e-60 234.6 242 56.2
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 8.1e-60 234.6 244 55.7
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 3.1e-59 232.6 212 59.9
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 3.1e-59 232.6 248 54.4
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 9.0e-59 231.1 245 53.5
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 1.2e-58 230.7 217 58.1
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 2.0e-58 229.9 231 54.1
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 5.8e-58 228.4 238 54.2
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 9.9e-58 227.6 209 59.3
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 2.2e-57 226.5 156 70.5
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 7.1e-56 221.5 158 68.4
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 1.2e-55 220.7 242 55.4
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 1.6e-55 220.3 157 70.1
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 2.1e-55 219.9 231 56.3
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 2.7e-55 219.5 158 67.7
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 3.5e-55 219.2 215 60.0
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 5.1e-54 215.3 159 66.0
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 9.6e-53 211.1 260 48.8
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 9.6e-53 211.1 220 58.6
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 7.6e-50 201.4 153 66.0
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 1.2e-47 194.1 237 51.1
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 2.1e-47 193.4 133 69.2
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 2.7e-47 193.0 230 52.6
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 7.4e-45 184.9 146 62.3
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 8.2e-44 181.4 134 63.4
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 1.5e-42 177.2 185 52.4
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 5.0e-41 172.2 131 64.1
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 5.0e-41 172.2 225 48.0
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 1.4e-40 170.6 134 59.0
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 7.2e-40 168.3 169 56.2
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 2.1e-39 166.8 196 49.5
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 2.1e-39 166.8 132 59.1
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 6.1e-39 165.2 113 73.5
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 7.9e-39 164.9 167 56.3
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 3.3e-37 159.5 175 52.6
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.8e-35 153.7 156 55.8
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 6.1e-31 138.7 140 55.7
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 4.4e-29 132.5 96 68.8
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 7.4e-29 131.7 87 74.7
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 5.0e-25 119.0 68 80.9
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 5.3e-19 99.0 130 47.7
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 1.6e-18 97.4 59 81.4
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 2.0e-18 97.1 53 81.1
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 5.5e-16 89.0 138 36.2
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 9.4e-16 88.2 106 49.1
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 4.7e-15 85.9 54 77.8
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.0e-14 84.7 115 47.0
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 3.2e-08 63.2 36 80.6
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 1.6e-07 60.8 224 28.1
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 1.0e-06 58.2 128 29.7


User provided reference genes

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