Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 0.0e+00 1150.2 574 100.0
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 1.4e-243 846.3 558 73.7
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 5.5e-232 807.7 555 71.0
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 9.8e-229 797.0 558 69.5
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 6.3e-228 794.3 558 68.6
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 3.1e-227 792.0 555 69.5
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 1.6e-226 789.6 562 68.0
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 1.6e-226 789.6 562 68.9
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 7.7e-226 787.3 566 68.4
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 1.3e-225 786.6 560 69.8
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.7e-225 786.2 556 68.9
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 6.6e-225 784.3 560 69.6
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 1.5e-224 783.1 564 67.2
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 1.9e-224 782.7 559 68.5
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 3.3e-224 781.9 558 68.6
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 7.3e-224 780.8 556 67.6
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 7.3e-224 780.8 558 68.6
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 1.2e-223 780.0 562 68.1
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 4.7e-223 778.1 560 67.9
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 1.8e-222 776.2 562 67.1
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 3.0e-222 775.4 558 68.3
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 6.8e-222 774.2 558 68.3
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 1.2e-221 773.5 560 67.1
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 1.2e-221 773.5 558 67.9
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 9.8e-221 770.4 564 66.1
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 2.2e-220 769.2 562 67.3
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 2.9e-220 768.8 562 67.3
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 6.4e-220 767.7 558 67.6
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 1.2e-218 763.5 562 66.9
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 2.7e-218 762.3 556 66.9
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 2.7e-218 762.3 562 67.1
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 7.8e-218 760.8 555 66.1
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 1.7e-217 759.6 562 67.4
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 3.0e-217 758.8 558 67.2
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 5.0e-217 758.1 560 67.9
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 6.6e-217 757.7 558 66.3
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 6.6e-217 757.7 559 66.4
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 6.6e-217 757.7 558 67.0
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 8.6e-217 757.3 558 66.3
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 1.5e-216 756.5 555 66.8
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 2.5e-216 755.7 562 67.3
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 2.1e-215 752.7 565 65.1
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 4.7e-215 751.5 558 66.5
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 4.7e-215 751.5 558 66.1
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 5.2e-214 748.0 580 66.4
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 8.9e-214 747.3 560 64.8
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 1.2e-213 746.9 558 65.1
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 2.2e-212 742.7 562 66.4
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 1.2e-210 736.9 556 64.7
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 1.7e-209 733.0 567 65.1
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 1.7e-209 733.0 562 63.9
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 3.0e-209 732.3 571 63.9
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 4.3e-208 728.4 556 64.6
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 6.2e-207 724.5 558 63.6
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 6.2e-207 724.5 520 67.7
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 1.1e-206 723.8 560 64.8
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 1.5e-205 719.9 560 64.5
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 2.6e-205 719.2 564 63.8
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 2.6e-205 719.2 570 63.2
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 3.4e-205 718.8 569 63.6
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 4.4e-205 718.4 557 64.6
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 7.5e-205 717.6 561 64.9
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 7.5e-205 717.6 569 63.6
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 2.4e-203 712.6 555 62.9
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 7.1e-203 711.1 556 62.9
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 7.1e-203 711.1 556 62.9
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 9.2e-203 710.7 556 62.9
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 2.3e-201 706.1 556 63.5
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 3.0e-201 705.7 556 63.7
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 5.1e-201 704.9 565 62.7
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 8.6e-201 704.1 556 63.1
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 8.6e-201 704.1 556 63.3
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 1.9e-200 703.0 556 62.9
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 2.5e-200 702.6 567 61.7
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 5.6e-200 701.4 497 68.2
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 7.3e-200 701.0 566 62.5
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.6e-199 699.9 566 62.4
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 4.7e-199 698.4 566 62.4
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 9.9e-197 690.6 562 63.2
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 1.9e-195 686.4 556 61.9
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 7.1e-195 684.5 556 62.4
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 1.7e-193 679.9 556 61.5
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 3.3e-192 675.6 556 61.3
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 3.1e-190 669.1 564 60.3
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 8.9e-190 667.5 563 60.6
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 2.6e-189 666.0 556 60.6
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 4.4e-189 665.2 502 67.5
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 3.8e-188 662.1 558 60.6
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.2e-186 657.1 562 61.7
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 3.5e-186 655.6 576 59.2
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 1.2e-178 630.6 564 60.8
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 7.4e-176 621.3 559 59.0
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 1.5e-168 597.0 501 60.5
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 5.3e-166 588.6 443 65.7
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 1.1e-163 580.9 555 55.3
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 1.4e-163 580.5 567 53.6
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 6.0e-162 575.1 503 58.8
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 5.0e-156 555.4 581 51.3
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 1.1e-152 544.3 492 58.3
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 1.4e-137 494.2 570 46.8
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 8.5e-132 474.9 577 42.6
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 1.7e-127 460.7 567 43.6
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 3.2e-123 446.4 593 41.7
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 2.1e-114 417.2 562 43.1
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 3.4e-104 383.3 554 37.5
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 2.1e-90 337.4 340 54.4
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 2.9e-79 300.4 220 64.1
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 3.3e-43 180.6 282 39.7
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 8.2e-42 176.0 157 55.4
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 5.3e-41 173.3 140 58.6
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 8.5e-39 166.0 118 66.9
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 7.9e-37 159.5 160 52.5
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 3.0e-36 157.5 168 51.8
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 7.4e-35 152.9 156 48.7
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 4.8e-34 150.2 156 50.6
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 4.8e-34 150.2 227 37.9
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 4.8e-26 123.6 83 69.9
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 3.4e-24 117.5 80 68.8
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 1.6e-21 108.6 99 56.6
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 2.1e-21 108.2 196 38.3
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 3.7e-18 97.4 58 77.6
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 4.1e-17 94.0 58 75.9
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 1.2e-16 92.4 80 58.8
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 2.0e-16 91.7 54 77.8
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 9.4e-14 82.8 459 22.0
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 3.6e-13 80.9 218 30.3
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 1.4e-12 79.0 54 74.1
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 2.0e-08 65.1 56 60.7
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 7.7e-08 63.2 37 78.4
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 9.4e-06 56.2 37 70.3


User provided reference genes

Program Settings