Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 6.6e-129 464.2 253 100.0
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 7.6e-93 344.4 215 78.6
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.9e-91 339.7 215 78.6
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 3.0e-89 332.4 215 76.7
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 5.1e-89 331.6 215 76.3
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.9e-88 329.7 215 75.8
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 2.5e-88 329.3 216 74.1
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 3.3e-88 328.9 215 74.0
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 4.8e-87 325.1 215 74.4
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 1.1e-86 323.9 209 76.1
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 1.1e-86 323.9 215 73.5
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 1.1e-86 323.9 215 74.9
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 1.4e-86 323.6 215 74.0
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.4e-86 323.6 215 73.5
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 6.9e-86 321.2 215 73.0
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 9.1e-86 320.9 215 73.5
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 9.1e-86 320.9 215 73.0
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 1.5e-85 320.1 215 72.6
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.5e-85 320.1 215 72.6
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.0e-85 319.7 215 72.6
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 2.0e-85 319.7 209 76.1
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 2.6e-85 319.3 209 77.0
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 4.5e-85 318.5 216 74.5
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 5.9e-85 318.2 205 76.1
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 2.2e-84 316.2 215 72.6
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 2.9e-84 315.8 215 73.5
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 2.9e-84 315.8 215 73.0
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 8.5e-84 314.3 200 77.5
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 8.5e-84 314.3 203 73.9
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 1.4e-83 313.5 203 75.9
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.4e-83 313.5 199 77.4
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 2.5e-83 312.8 206 74.8
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 2.1e-82 309.7 203 73.9
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 2.7e-82 309.3 214 71.5
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 4.6e-82 308.5 214 72.0
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 4.6e-82 308.5 203 73.4
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 7.9e-82 307.8 215 71.6
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 7.9e-82 307.8 215 70.7
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 1.4e-81 307.0 214 70.1
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 1.4e-81 307.0 202 74.3
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 1.4e-81 307.0 215 69.8
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 1.8e-81 306.6 207 72.9
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 3.0e-81 305.8 215 72.1
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 5.1e-81 305.1 215 69.3
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 5.1e-81 305.1 215 70.2
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 6.7e-81 304.7 205 74.6
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 8.8e-81 304.3 216 70.8
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 8.8e-81 304.3 215 71.6
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 1.5e-80 303.5 215 69.8
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 2.6e-80 302.8 206 74.3
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.6e-80 302.8 215 70.2
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 3.3e-80 302.4 214 71.0
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 4.4e-80 302.0 214 69.2
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 4.4e-80 302.0 205 72.7
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.7e-80 301.6 209 71.3
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 5.7e-80 301.6 203 71.9
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 7.4e-80 301.2 212 71.2
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 7.4e-80 301.2 226 70.8
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 9.7e-80 300.8 255 63.1
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 9.7e-80 300.8 208 72.6
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 1.7e-79 300.1 201 71.6
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 2.2e-79 299.7 209 70.8
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 2.2e-79 299.7 205 71.7
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 3.7e-79 298.9 205 72.2
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 3.7e-79 298.9 201 71.1
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 4.8e-79 298.5 208 69.7
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 4.8e-79 298.5 218 69.7
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 6.3e-79 298.1 205 72.2
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.8e-78 296.6 214 70.6
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 2.4e-78 296.2 215 68.4
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 2.4e-78 296.2 205 70.7
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 4.1e-78 295.4 214 68.7
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 4.1e-78 295.4 205 72.7
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 1.2e-77 293.9 215 68.8
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 1.5e-77 293.5 215 69.3
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 3.4e-77 292.4 209 72.2
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 3.4e-77 292.4 205 72.2
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.3e-76 290.4 210 68.1
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 2.9e-76 289.3 193 74.1
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 3.8e-76 288.9 210 67.6
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 3.8e-76 288.9 198 70.7
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 1.4e-75 287.0 205 68.8
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 2.5e-75 286.2 195 70.3
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 3.2e-75 285.8 216 66.2
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 5.5e-75 285.0 200 69.5
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 5.5e-75 285.0 202 67.8
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 7.2e-75 284.6 214 64.0
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 7.2e-75 284.6 211 69.7
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 1.2e-74 283.9 202 70.3
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 2.1e-74 283.1 214 65.0
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 7.9e-74 281.2 213 65.7
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 5.2e-73 278.5 201 69.7
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 8.8e-73 277.7 201 68.2
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 2.0e-72 276.6 202 69.3
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 2.0e-72 276.6 312 51.9
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 5.7e-72 275.0 179 75.4
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 7.4e-72 274.6 205 68.8
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 9.7e-72 274.2 228 64.0
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 2.8e-71 272.7 210 66.2
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 2.4e-70 269.6 208 66.8
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 7.7e-69 264.6 210 65.7
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 1.3e-68 263.8 204 63.2
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 1.7e-68 263.5 208 65.9
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.7e-68 263.5 292 50.3
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 2.5e-67 259.6 232 59.1
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.2e-66 257.3 217 64.1
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 4.7e-66 255.4 217 63.6
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 1.2e-64 250.8 206 64.6
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 8.2e-63 244.6 215 59.5
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.4e-62 243.8 197 59.4
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.8e-62 243.4 177 70.1
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 1.2e-61 240.7 236 58.5
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 3.5e-61 239.2 197 60.4
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 4.5e-61 238.8 213 57.7
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 2.9e-60 236.1 209 58.9
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 2.7e-58 229.6 202 59.4
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 4.0e-57 225.7 217 56.7
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 5.4e-54 215.3 214 53.3
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 9.1e-54 214.5 148 70.3
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 7.7e-53 211.5 206 56.3
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 1.3e-52 210.7 219 53.9
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 5.0e-52 208.8 244 50.4
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 3.6e-50 202.6 184 54.9
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 9.8e-48 194.5 136 69.1
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 8.6e-44 181.4 145 65.5
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 3.3e-43 179.5 126 69.0
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 2.1e-42 176.8 120 70.8
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 4.9e-39 165.6 256 41.8
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 6.6e-36 155.2 151 54.3
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 4.3e-35 152.5 224 38.8
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.4e-33 147.5 100 76.0
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 2.3e-33 146.7 214 42.5
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.9e-31 139.8 289 37.0
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 7.0e-30 135.2 157 52.2
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 1.2e-29 134.4 228 37.3
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 8.6e-28 128.3 220 35.5
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 5.2e-25 119.0 92 64.1
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 9.9e-24 114.8 61 85.2
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 6.4e-23 112.1 72 73.6
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 8.3e-23 111.7 65 81.5
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 8.3e-23 111.7 65 81.5
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 1.6e-21 107.5 107 49.5
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 1.2e-18 97.8 79 59.5
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.2e-07 60.5 184 30.4
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 2.9e-07 60.1 158 31.0
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 2.9e-07 60.1 53 62.3
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.4e-06 57.8 34 67.6


User provided reference genes

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