Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0009890 Simmondsia chinensis HOM05D001194 ORTHO05D005909 1.3e-96 356.3 173 100.0
GSVIVG01016891001 Vitis vinifera HOM05D001194 ORTHO05D005909 3.0e-80 302.0 161 88.8
EL10Ac9g21120 Beta vulgaris HOM05D001194 ORTHO05D005909 1.5e-79 299.7 160 89.4
Ah.01g004470 Amaranthus hybridus HOM05D001194 ORTHO05D005909 5.6e-79 297.7 161 88.2
Dinv37933 Davidia involucrata HOM05D001194 ORTHO05D005909 3.6e-78 295.0 161 87.0
Manes.04G137500 Manihot esculenta HOM05D001194 ORTHO05D005909 4.8e-78 294.7 161 87.0
TAR626G1853 Trochodendron aralioides HOM05D001194 ORTHO05D005909 8.1e-78 293.9 161 83.9
Prupe.3G052600 Prunus persica HOM05D001194 ORTHO05D005909 1.4e-77 293.1 161 85.1
Atru.chr1.3635 Acer truncatum HOM05D001194 ORTHO05D005909 2.4e-77 292.4 161 85.1
Nn6g35406 Nelumbo nucifera HOM05D001194 ORTHO05D005909 4.0e-77 291.6 161 83.9
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 5.3e-77 291.2 161 84.5
QL05p015826 Quercus lobata HOM05D001194 ORTHO05D005909 5.3e-77 291.2 160 85.0
Nn8g38927 Nelumbo nucifera HOM05D001194 ORTHO05D005909 1.2e-76 290.0 161 84.5
MD09G1196200 Malus domestica HOM05D001194 ORTHO05D005909 2.0e-76 289.3 161 83.9
CiPaw.01G227200 Carya illinoinensis HOM05D001194 ORTHO05D005909 2.6e-76 288.9 161 83.2
CANSAT56G1148 Cannabis sativa HOM05D001194 ORTHO05D005909 3.4e-76 288.5 161 83.2
Lj3g0001136 Lotus japonicus HOM05D001194 ORTHO05D005909 5.8e-76 287.7 159 86.2
PGR102G0345 Punica granatum HOM05D001194 ORTHO05D005909 9.9e-76 287.0 161 85.1
CsaV3_3G044050 Cucumis sativus L. HOM05D001194 ORTHO05D005909 1.3e-75 286.6 161 82.6
Lalb_Chr04g0263101 Lupinus albus HOM05D001194 ORTHO05D005909 1.3e-75 286.6 161 85.1
Medtr8g015600 Medicago truncatula HOM05D001194 ORTHO05D005909 1.3e-75 286.6 161 85.1
arahy.Tifrunner.gnm1.ann1.2JHZ20 Arachis hypogaea HOM05D001194 ORTHO05D005909 1.7e-75 286.2 161 83.9
arahy.Tifrunner.gnm1.ann1.U81MKX Arachis hypogaea HOM05D001194 ORTHO05D005909 1.7e-75 286.2 161 83.9
Eucgr.J02887 Eucalyptus grandis HOM05D001194 ORTHO05D005909 1.7e-75 286.2 161 84.5
Glyma.08G196200 Glycine max HOM05D001194 ORTHO05D005909 1.7e-75 286.2 161 84.5
Dinv30399 Davidia involucrata HOM05D001194 ORTHO05D005909 2.2e-75 285.8 161 83.9
Psat4g194400 Pisum sativum HOM05D001194 ORTHO05D005909 2.9e-75 285.4 161 85.1
AUR62038337 Chenopodium quinoa HOM05D001194 ORTHO05D005909 3.8e-75 285.0 153 88.2
TWI79G1226 Tripterygium wilfordii HOM05D001194 ORTHO05D005909 3.8e-75 285.0 161 84.5
Glyma.07G012500 Glycine max HOM05D001194 ORTHO05D005909 4.9e-75 284.6 161 83.9
Sabra01G0156300 Salix brachista HOM05D001194 ORTHO05D005909 4.9e-75 284.6 160 83.1
Haze_15919 Corylus avellana HOM05D001194 ORTHO05D005909 6.4e-75 284.3 161 83.2
Thecc.06G107800 Theobroma cacao HOM05D001194 ORTHO05D005909 6.4e-75 284.3 161 82.6
AUR62023909 Chenopodium quinoa HOM05D001194 ORTHO05D005909 8.4e-75 283.9 152 88.8
Gohir.A10G062100 Gossypium hirsutum HOM05D001194 ORTHO05D005909 8.4e-75 283.9 161 82.6
Gohir.D10G063800 Gossypium hirsutum HOM05D001194 ORTHO05D005909 8.4e-75 283.9 161 82.6
Gorai.011G067700 Gossypium raimondii HOM05D001194 ORTHO05D005909 8.4e-75 283.9 161 82.6
Potri.001G199600 Populus trichocarpa HOM05D001194 ORTHO05D005909 8.4e-75 283.9 161 82.6
ClCG07G013590 Citrullus lanatus HOM05D001194 ORTHO05D005909 1.1e-74 283.5 162 82.7
Sed0016739 Sechium edule HOM05D001194 ORTHO05D005909 1.9e-74 282.7 161 80.7
COL.COLO4_30608 Corchorus olitorius HOM05D001194 ORTHO05D005909 2.4e-74 282.3 161 80.7
RcHm_v2.0_Chr2g0142511 Rosa chinensis HOM05D001194 ORTHO05D005909 2.4e-74 282.3 161 81.4
Cfa003606 Carpinus fangiana HOM05D001194 ORTHO05D005909 3.2e-74 282.0 161 82.0
VMungo0331G0168 Vigna mungo HOM05D001194 ORTHO05D005909 5.4e-74 281.2 161 82.6
FAN09G1927 Fragaria x ananassa HOM05D001194 ORTHO05D005909 7.1e-74 280.8 161 80.7
Phvul.010G142000 Phaseolus vulgaris HOM05D001194 ORTHO05D005909 7.1e-74 280.8 161 82.6
RcHm_v2.0_Chr2g0142481 Rosa chinensis HOM05D001194 ORTHO05D005909 7.1e-74 280.8 161 80.7
Duzib235G0439 Durio zibethinus HOM05D001194 ORTHO05D005909 9.3e-74 280.4 161 80.7
Phvul.010G141900 Phaseolus vulgaris HOM05D001194 ORTHO05D005909 1.2e-73 280.0 161 82.6
Lj5A49T38 Lonicera japonica HOM05D001194 ORTHO05D005909 1.6e-73 279.6 161 85.1
Aqoxy7G01307 Aquilegia oxysepala HOM05D001194 ORTHO05D005909 2.1e-73 279.3 161 78.9
Peaxi162Scf00087g00133 Petunia axillaris HOM05D001194 ORTHO05D005909 2.1e-73 279.3 161 86.3
VMungo0331G0238 Vigna mungo HOM05D001194 ORTHO05D005909 2.1e-73 279.3 161 82.6
arahy.Tifrunner.gnm1.ann1.3FEZ81 Arachis hypogaea HOM05D001194 ORTHO05D005909 2.7e-73 278.9 159 81.8
arahy.Tifrunner.gnm1.ann1.86BA7N Arachis hypogaea HOM05D001194 ORTHO05D005909 2.7e-73 278.9 159 81.8
Sed0012613 Sechium edule HOM05D001194 ORTHO05D005909 2.7e-73 278.9 161 80.7
CSS0021774 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 3.5e-73 278.5 161 82.6
Hund00742 Selenicereus undatus HOM05D001194 ORTHO05D005909 3.5e-73 278.5 152 86.2
CAN.G410.38 Capsicum annuum HOM05D001194 ORTHO05D005909 4.6e-73 278.1 161 85.1
Lj3g0000235 Lotus japonicus HOM05D001194 ORTHO05D005909 2.3e-72 275.8 161 81.4
vmacro18821 Vaccinium macrocarpon HOM05D001194 ORTHO05D005909 2.3e-72 275.8 161 82.0
FAN02G4259 Fragaria x ananassa HOM05D001194 ORTHO05D005909 5.1e-72 274.6 161 79.5
Solyc01g068210.3 Solanum lycopersicum HOM05D001194 ORTHO05D005909 5.1e-72 274.6 161 84.5
Sopen01g030150 Solanum pennellii HOM05D001194 ORTHO05D005909 5.1e-72 274.6 161 84.5
PGSC0003DMG402006819 Solanum tuberosum HOM05D001194 ORTHO05D005909 5.1e-72 274.6 161 85.7
MSTRG.22605 Avicennia marina HOM05D001194 ORTHO05D005909 8.7e-72 273.9 161 85.1
Nitab4.5_0000316g0210 Nicotiana tabacum HOM05D001194 ORTHO05D005909 1.1e-71 273.5 161 85.1
Nitab4.5_0001543g0050 Nicotiana tabacum HOM05D001194 ORTHO05D005909 1.1e-71 273.5 161 85.1
Actinidia21741 Actinidia chinensis HOM05D001194 ORTHO05D005909 7.3e-71 270.8 161 81.4
CSS0002183 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 7.3e-71 270.8 161 80.7
CSS0036616 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 7.3e-71 270.8 161 80.7
THA.LOC104805919 Tarenaya hassleriana HOM05D001194 ORTHO05D005909 7.3e-71 270.8 161 79.5
Cc04_g02210 Coffea canephora HOM05D001194 ORTHO05D005909 2.1e-70 269.2 161 80.7
Lsat_1_v5_gn_4_96000 Lactuca sativa HOM05D001194 ORTHO05D005909 6.2e-70 267.7 161 78.3
Migut.D00978 Erythranthe guttata HOM05D001194 ORTHO05D005909 8.1e-70 267.3 161 83.2
SGA_v2.0_scaffold71G23749 Striga asiatica HOM05D001194 ORTHO05D005909 8.1e-70 267.3 161 82.0
ECA232G0548 Erigeron canadensis HOM05D001194 ORTHO05D005909 1.4e-69 266.5 161 77.6
DCAR_031424 Daucus carota HOM05D001194 ORTHO05D005909 1.8e-69 266.2 161 80.1
AL1G59660 Arabidopsis lyrata HOM05D001194 ORTHO05D005909 2.4e-69 265.8 161 76.4
BcaB07g33628 Brassica carinata HOM05D001194 ORTHO05D005909 2.4e-69 265.8 161 76.4
A08p02540 Brassica napus HOM05D001194 ORTHO05D005909 2.4e-69 265.8 161 76.4
C03p90270 Brassica napus HOM05D001194 ORTHO05D005909 2.4e-69 265.8 161 76.4
BolC3t21349H Brassica oleracea HOM05D001194 ORTHO05D005909 2.4e-69 265.8 161 76.4
BraA08t32294Z Brassica rapa HOM05D001194 ORTHO05D005909 2.4e-69 265.8 161 76.4
Thhalv10011312m.g Eutrema salsugineum HOM05D001194 ORTHO05D005909 2.4e-69 265.8 161 76.4
HanXRQChr09g0276311 Helianthus annuus HOM05D001194 ORTHO05D005909 2.4e-69 265.8 161 79.5
Sp1g38360 Schrenkiella parvula HOM05D001194 ORTHO05D005909 2.4e-69 265.8 161 76.4
AT1G51720 Arabidopsis thaliana HOM05D001194 ORTHO05D005909 3.1e-69 265.4 161 76.4
CARHR041880 Cardamine hirsuta HOM05D001194 ORTHO05D005909 3.1e-69 265.4 161 76.4
Aa31LG10G3090 Aethionema arabicum HOM05D001194 ORTHO05D005909 4.0e-69 265.0 161 76.4
A06p02290 Brassica napus HOM05D001194 ORTHO05D005909 4.0e-69 265.0 161 76.4
BraA06t23435Z Brassica rapa HOM05D001194 ORTHO05D005909 4.0e-69 265.0 161 76.4
PSO063G4370 Papaver somniferum HOM05D001194 ORTHO05D005909 5.3e-69 264.6 161 77.0
PSO832G2057 Papaver somniferum HOM05D001194 ORTHO05D005909 5.3e-69 264.6 161 77.0
BcaC08g43332 Brassica carinata HOM05D001194 ORTHO05D005909 9.0e-69 263.8 161 75.8
C06p06880 Brassica napus HOM05D001194 ORTHO05D005909 9.0e-69 263.8 161 75.8
BolC6t35794H Brassica oleracea HOM05D001194 ORTHO05D005909 1.2e-68 263.5 161 75.8
Duzib160G0082 Durio zibethinus HOM05D001194 ORTHO05D005909 1.5e-68 263.1 182 70.3
Carub.0001s4059 Capsella rubella HOM05D001194 ORTHO05D005909 3.4e-68 261.9 161 74.5
MBI04_g06219_MAGBIO Magnolia biondii HOM05D001194 ORTHO05D005909 2.2e-67 259.2 161 72.0
BcaC01g01292 Brassica carinata HOM05D001194 ORTHO05D005909 3.8e-67 258.5 162 74.7
unitig_748.g7452 Utricularia gibba HOM05D001194 ORTHO05D005909 3.8e-67 258.5 161 78.9
Actinidia32131 Actinidia chinensis HOM05D001194 ORTHO05D005909 1.3e-64 250.0 151 81.5
MELO3C013031.2 Cucumis melo HOM05D001194 ORTHO05D005909 6.7e-64 247.7 136 83.8
Rhsim08G0231400 Rhododendron simsii HOM05D001194 ORTHO05D005909 1.9e-63 246.1 190 66.3
FAN05G2672 Fragaria x ananassa HOM05D001194 ORTHO05D005909 1.6e-62 243.0 136 81.6
FAN14G3358 Fragaria x ananassa HOM05D001194 ORTHO05D005909 2.8e-62 242.3 136 81.6
HPP92_023231 Vanilla planifolia HOM05D001194 ORTHO05D005909 8.1e-62 240.7 161 66.5
Oeu039981.1 Olea europaea HOM05D001194 ORTHO05D005909 1.2e-60 236.9 136 85.3
ATR0789G185 Amborella trichopoda HOM05D001194 ORTHO05D005909 2.0e-60 236.1 161 67.7
CDE05G0449 Ceratophyllum demersum HOM05D001194 ORTHO05D005909 1.3e-59 233.4 161 66.5
Os01g0558200 Oryza sativa ssp. japonica HOM05D001194 ORTHO05D005909 6.5e-59 231.1 161 64.6
Glyma.09G152800 Glycine max HOM05D001194 ORTHO05D005909 1.2e-52 210.3 163 67.5
SEGI_14715 Sequoiadendron giganteum HOM05D001194 ORTHO05D005909 2.2e-51 206.1 161 60.2
SMO119G0344 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 4.2e-50 201.8 161 54.0
SMO163G0008 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 4.2e-50 201.8 161 54.0
EL10Ac9g21131 Beta vulgaris HOM05D001194 ORTHO05D005909 2.7e-49 199.1 113 86.7
AagrBONN_evm.TU.Sc2ySwM_362.2881 Anthoceros agrestis HOM05D001194 ORTHO05D005909 1.1e-47 193.7 161 52.8
Ca_23295_v3 Cicer arietinum L. HOM05D001194 ORTHO05D005909 1.1e-47 193.7 110 86.4
arahy.Tifrunner.gnm1.ann1.YRZZ7C Arachis hypogaea HOM05D001194 ORTHO05D005909 7.4e-47 191.0 122 73.8
Mapoly0010s0062 Marchantia polymorpha HOM05D001194 ORTHO05D005909 1.6e-46 189.9 161 52.2
TPR.G8761 Trifolium pratense HOM05D001194 ORTHO05D005909 2.4e-45 186.0 104 80.8
Pp3c14_22460 Physcomitrium patens HOM05D001194 ORTHO05D005909 4.1e-45 185.3 161 49.7
Pp3c2_4200 Physcomitrium patens HOM05D001194 ORTHO05D005909 4.5e-44 181.8 161 49.1
SMO347G0060 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 5.9e-44 181.4 161 47.8
arahy.Tifrunner.gnm1.ann1.D8HU13 Arachis hypogaea HOM05D001194 ORTHO05D005909 1.3e-43 180.3 132 66.7
Potri.001G193600 Populus trichocarpa HOM05D001194 ORTHO05D005909 7.9e-41 171.0 165 57.6
THA.LOC104817936 Tarenaya hassleriana HOM05D001194 ORTHO05D005909 2.8e-38 162.5 105 71.4
CiPaw.02G142100 Carya illinoinensis HOM05D001194 ORTHO05D005909 4.8e-38 161.8 85 84.7
Ciclev10025274m.g Citrus clementina HOM05D001194 ORTHO05D005909 8.2e-38 161.0 84 85.7
FvH4_6g32960 Fragaria vesca HOM05D001194 ORTHO05D005909 8.2e-38 161.0 94 76.6
MD17G1176900 Malus domestica HOM05D001194 ORTHO05D005909 1.4e-37 160.2 87 81.6
Pp3c1_36440 Physcomitrium patens HOM05D001194 ORTHO05D005909 6.1e-25 118.2 82 57.3
PRCOL_00003219 Prasinoderma coloniale HOM05D001194 ORTHO05D005909 2.6e-20 102.8 146 40.4
MD17G1177000 Malus domestica HOM05D001194 ORTHO05D005909 8.0e-17 91.3 57 77.2
arahy.Tifrunner.gnm1.ann1.FTMH30 Arachis hypogaea HOM05D001891 ORTHO05D005832 1.5e-10 70.5 45 73.3
arahy.Tifrunner.gnm1.ann1.H04EJ4 Arachis hypogaea HOM05D001194 ORTHO05D005044 7.2e-10 68.2 45 71.1
arahy.Tifrunner.gnm1.ann1.K82YC3 Arachis hypogaea HOM05D004293 ORTHO05D005044 7.2e-10 68.2 45 71.1
arahy.Tifrunner.gnm1.ann1.4DL9G8 Arachis hypogaea HOM05D004293 ORTHO05D005044 9.4e-10 67.8 45 71.1
arahy.Tifrunner.gnm1.ann1.N6M4TT Arachis hypogaea HOM05D001194 ORTHO05D005909 1.0e-08 64.3 58 58.6
arahy.Tifrunner.gnm1.ann1.CV7JLA Arachis hypogaea HOM05D004293 ORTHO05D005044 1.4e-08 63.9 45 66.7
Os02g0650900 Oryza sativa ssp. japonica HOM05D001569 ORTHO05D001723 4.0e-08 62.4 106 31.1
DCAR_028275 Daucus carota HOM05D001194 ORTHO05D005909 5.2e-08 62.0 71 52.1
Cfa012325 Carpinus fangiana HOM05D001569 ORTHO05D001723 3.4e-07 59.3 114 26.3
BcaNung05742 Brassica carinata HOM05D001569 ORTHO05D001723 4.4e-07 58.9 99 32.3
Haze_08371 Corylus avellana HOM05D001569 ORTHO05D001723 4.4e-07 58.9 114 27.2
Nn6g33761 Nelumbo nucifera HOM05D001569 ORTHO05D001723 4.4e-07 58.9 96 30.2
Lalb_Chr09g0329791 Lupinus albus HOM05D001569 ORTHO05D001723 5.7e-07 58.5 119 26.1
A01p41280 Brassica napus HOM05D001569 ORTHO05D001723 7.5e-07 58.2 99 31.3
BNapus_Darmor_BZH_scaffold_78p00430 Brassica napus HOM05D001569 ORTHO05D001723 7.5e-07 58.2 99 31.3
BraA01t04551Z Brassica rapa HOM05D001569 ORTHO05D001723 7.5e-07 58.2 99 31.3
BcaNung05744 Brassica carinata HOM05D001569 ORTHO05D001723 2.2e-06 56.6 99 30.3
BolC1t05800H Brassica oleracea HOM05D001569 ORTHO05D001723 2.2e-06 56.6 99 30.3
CARHR078030 Cardamine hirsuta HOM05D001569 ORTHO05D001723 2.8e-06 56.2 98 30.6
A05p43460 Brassica napus HOM05D001569 ORTHO05D001723 3.7e-06 55.8 99 31.3
BraA05t23086Z Brassica rapa HOM05D001569 ORTHO05D001723 3.7e-06 55.8 99 31.3
Duzib084G0990 Durio zibethinus HOM05D001569 ORTHO05D001723 3.7e-06 55.8 114 25.4
AL3G13800 Arabidopsis lyrata HOM05D001569 ORTHO05D001723 4.9e-06 55.5 99 30.3
Carub.0003s0315 Capsella rubella HOM05D001569 ORTHO05D001723 4.9e-06 55.5 99 30.3
Sp3g02880 Schrenkiella parvula HOM05D001569 ORTHO05D001723 4.9e-06 55.5 99 31.3
HPP92_015637 Vanilla planifolia HOM05D001569 ORTHO05D001723 4.9e-06 55.5 100 30.0
Sc19g0006450 Simmondsia chinensis HOM05D001569 ORTHO05D001723 6.3e-06 55.1 99 31.3
BcaC05g29892 Brassica carinata HOM05D001569 ORTHO05D001723 8.3e-06 54.7 99 30.3
BolC5t34966H Brassica oleracea HOM05D001569 ORTHO05D001723 8.3e-06 54.7 99 30.3


User provided reference genes

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