Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0009870 Simmondsia chinensis HOM05D001194 ORTHO05D005909 4.6e-138 494.6 253 100.0
Prupe.3G052600 Prunus persica HOM05D001194 ORTHO05D005909 9.9e-109 397.1 235 84.7
CiPaw.01G227200 Carya illinoinensis HOM05D001194 ORTHO05D005909 2.9e-108 395.6 231 86.1
Ciclev10025274m.g Citrus clementina HOM05D001194 ORTHO05D005909 2.9e-108 395.6 231 85.7
ClCG07G013590 Citrullus lanatus HOM05D001194 ORTHO05D005909 3.8e-108 395.2 231 85.3
CANSAT56G1148 Cannabis sativa HOM05D001194 ORTHO05D005909 1.4e-107 393.3 231 84.8
MELO3C013031.2 Cucumis melo HOM05D001194 ORTHO05D005909 1.4e-107 393.3 231 84.8
CsaV3_3G044050 Cucumis sativus L. HOM05D001194 ORTHO05D005909 1.4e-107 393.3 231 84.8
MD09G1196200 Malus domestica HOM05D001194 ORTHO05D005909 4.2e-107 391.7 235 83.8
Eucgr.J02887 Eucalyptus grandis HOM05D001194 ORTHO05D005909 2.1e-106 389.4 231 83.5
TWI79G1226 Tripterygium wilfordii HOM05D001194 ORTHO05D005909 6.0e-106 387.9 231 83.5
Nitab4.5_0000316g0210 Nicotiana tabacum HOM05D001194 ORTHO05D005909 7.9e-106 387.5 240 82.9
Atru.chr1.3635 Acer truncatum HOM05D001194 ORTHO05D005909 1.0e-105 387.1 231 86.1
Nitab4.5_0001543g0050 Nicotiana tabacum HOM05D001194 ORTHO05D005909 1.0e-105 387.1 240 82.5
CiPaw.02G142100 Carya illinoinensis HOM05D001194 ORTHO05D005909 1.3e-105 386.7 231 84.0
Manes.04G137500 Manihot esculenta HOM05D001194 ORTHO05D005909 2.3e-105 386.0 231 85.3
FAN09G1927 Fragaria x ananassa HOM05D001194 ORTHO05D005909 3.9e-105 385.2 231 83.1
Hund00742 Selenicereus undatus HOM05D001194 ORTHO05D005909 3.9e-105 385.2 231 85.7
FvH4_6g32960 Fragaria vesca HOM05D001194 ORTHO05D005909 5.1e-105 384.8 231 83.1
MD17G1176900 Malus domestica HOM05D001194 ORTHO05D005909 8.7e-105 384.0 231 84.0
CAN.G410.38 Capsicum annuum HOM05D001194 ORTHO05D005909 1.1e-104 383.6 240 82.1
QL05p015826 Quercus lobata HOM05D001194 ORTHO05D005909 1.1e-104 383.6 231 84.8
Cfa003606 Carpinus fangiana HOM05D001194 ORTHO05D005909 1.5e-104 383.3 231 84.8
Haze_15919 Corylus avellana HOM05D001194 ORTHO05D005909 1.5e-104 383.3 231 84.8
FAN02G4259 Fragaria x ananassa HOM05D001194 ORTHO05D005909 1.5e-104 383.3 231 82.7
FAN05G2672 Fragaria x ananassa HOM05D001194 ORTHO05D005909 1.5e-104 383.3 231 82.7
CSS0021774 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 2.5e-104 382.5 231 83.1
Lj5A49T38 Lonicera japonica HOM05D001194 ORTHO05D005909 2.5e-104 382.5 231 82.3
FAN14G3358 Fragaria x ananassa HOM05D001194 ORTHO05D005909 5.6e-104 381.3 231 82.7
Peaxi162Scf00087g00133 Petunia axillaris HOM05D001194 ORTHO05D005909 7.4e-104 380.9 238 82.4
Sed0016739 Sechium edule HOM05D001194 ORTHO05D005909 7.4e-104 380.9 231 81.4
RcHm_v2.0_Chr2g0142511 Rosa chinensis HOM05D001194 ORTHO05D005909 1.6e-103 379.8 231 82.3
Dinv30399 Davidia involucrata HOM05D001194 ORTHO05D005909 3.7e-103 378.6 236 82.2
Sed0012613 Sechium edule HOM05D001194 ORTHO05D005909 3.7e-103 378.6 231 81.8
Glyma.08G196200 Glycine max HOM05D001194 ORTHO05D005909 6.2e-103 377.9 232 81.9
vmacro18821 Vaccinium macrocarpon HOM05D001194 ORTHO05D005909 8.2e-103 377.5 232 82.8
CSS0002183 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 3.1e-102 375.6 231 82.3
CSS0036616 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 3.1e-102 375.6 231 82.3
VMungo0331G0238 Vigna mungo HOM05D001194 ORTHO05D005909 3.1e-102 375.6 231 82.3
Thecc.06G107800 Theobroma cacao HOM05D001194 ORTHO05D005909 5.3e-102 374.8 236 83.5
Glyma.07G012500 Glycine max HOM05D001194 ORTHO05D005909 6.9e-102 374.4 232 81.5
Medtr8g015600 Medicago truncatula HOM05D001194 ORTHO05D005909 6.9e-102 374.4 231 81.8
Phvul.010G141900 Phaseolus vulgaris HOM05D001194 ORTHO05D005909 9.0e-102 374.0 234 82.5
Potri.001G199600 Populus trichocarpa HOM05D001194 ORTHO05D005909 5.8e-101 371.3 231 81.8
Carub.0001s4059 Capsella rubella HOM05D001194 ORTHO05D005909 7.6e-101 370.9 231 79.7
TAR626G1853 Trochodendron aralioides HOM05D001194 ORTHO05D005909 7.6e-101 370.9 222 83.3
Gohir.A10G062100 Gossypium hirsutum HOM05D001194 ORTHO05D005909 1.0e-100 370.5 230 83.0
Gohir.D10G063800 Gossypium hirsutum HOM05D001194 ORTHO05D005909 1.0e-100 370.5 230 83.0
Gorai.011G067700 Gossypium raimondii HOM05D001194 ORTHO05D005909 1.0e-100 370.5 230 83.0
AL1G59660 Arabidopsis lyrata HOM05D001194 ORTHO05D005909 1.7e-100 369.8 231 79.2
AUR62023909 Chenopodium quinoa HOM05D001194 ORTHO05D005909 1.7e-100 369.8 233 82.4
EL10Ac9g21120 Beta vulgaris HOM05D001194 ORTHO05D005909 2.2e-100 369.4 233 82.4
Ca_23295_v3 Cicer arietinum L. HOM05D001194 ORTHO05D005909 2.9e-100 369.0 231 80.1
CARHR041880 Cardamine hirsuta HOM05D001194 ORTHO05D005909 3.8e-100 368.6 231 79.2
Rhsim08G0231400 Rhododendron simsii HOM05D001194 ORTHO05D005909 4.9e-100 368.2 231 80.5
arahy.Tifrunner.gnm1.ann1.2JHZ20 Arachis hypogaea HOM05D001194 ORTHO05D005909 8.4e-100 367.5 229 79.9
arahy.Tifrunner.gnm1.ann1.U81MKX Arachis hypogaea HOM05D001194 ORTHO05D005909 8.4e-100 367.5 229 79.9
AUR62038337 Chenopodium quinoa HOM05D001194 ORTHO05D005909 8.4e-100 367.5 233 81.5
Nn8g38927 Nelumbo nucifera HOM05D001194 ORTHO05D005909 8.4e-100 367.5 233 80.7
MSTRG.22605 Avicennia marina HOM05D001194 ORTHO05D005909 1.1e-99 367.1 231 81.8
Lj3g0001136 Lotus japonicus HOM05D001194 ORTHO05D005909 1.4e-99 366.7 238 78.2
Psat4g194400 Pisum sativum HOM05D001194 ORTHO05D005909 1.4e-99 366.7 231 81.0
Sp1g38360 Schrenkiella parvula HOM05D001194 ORTHO05D005909 1.4e-99 366.7 231 78.4
Duzib160G0082 Durio zibethinus HOM05D001194 ORTHO05D005909 1.9e-99 366.3 231 84.0
arahy.Tifrunner.gnm1.ann1.86BA7N Arachis hypogaea HOM05D001194 ORTHO05D005909 2.5e-99 365.9 231 80.5
Aa31LG10G3090 Aethionema arabicum HOM05D001194 ORTHO05D005909 3.2e-99 365.5 226 80.5
Thhalv10011312m.g Eutrema salsugineum HOM05D001194 ORTHO05D005909 4.2e-99 365.2 231 78.4
THA.LOC104805919 Tarenaya hassleriana HOM05D001194 ORTHO05D005909 4.2e-99 365.2 231 79.7
AT1G51720 Arabidopsis thaliana HOM05D001194 ORTHO05D005909 5.5e-99 364.8 231 77.9
Duzib235G0439 Durio zibethinus HOM05D001194 ORTHO05D005909 1.6e-98 363.2 231 81.8
Dinv37933 Davidia involucrata HOM05D001194 ORTHO05D005909 2.7e-98 362.5 222 81.5
BcaB07g33628 Brassica carinata HOM05D001194 ORTHO05D005909 3.5e-98 362.1 232 79.7
Phvul.010G142000 Phaseolus vulgaris HOM05D001194 ORTHO05D005909 3.5e-98 362.1 233 81.1
arahy.Tifrunner.gnm1.ann1.3FEZ81 Arachis hypogaea HOM05D001194 ORTHO05D005909 4.6e-98 361.7 232 80.2
TPR.G8761 Trifolium pratense HOM05D001194 ORTHO05D005909 7.9e-98 360.9 231 78.4
VMungo0331G0168 Vigna mungo HOM05D001194 ORTHO05D005909 1.3e-97 360.1 233 80.7
Ah.01g004470 Amaranthus hybridus HOM05D001194 ORTHO05D005909 3.9e-97 358.6 224 83.5
ECA232G0548 Erigeron canadensis HOM05D001194 ORTHO05D005909 1.9e-96 356.3 231 78.4
Lalb_Chr04g0263101 Lupinus albus HOM05D001194 ORTHO05D005909 1.9e-96 356.3 225 78.2
Sabra01G0156300 Salix brachista HOM05D001194 ORTHO05D005909 1.9e-96 356.3 231 79.2
BraA08t32294Z Brassica rapa HOM05D001194 ORTHO05D005909 3.3e-96 355.5 228 78.9
HanXRQChr09g0276311 Helianthus annuus HOM05D001194 ORTHO05D005909 7.4e-96 354.4 231 75.8
C03p90270 Brassica napus HOM05D001194 ORTHO05D005909 1.3e-95 353.6 227 78.4
BolC3t21349H Brassica oleracea HOM05D001194 ORTHO05D005909 1.3e-95 353.6 227 78.4
Lsat_1_v5_gn_4_96000 Lactuca sativa HOM05D001194 ORTHO05D005909 3.7e-95 352.1 222 79.3
A08p02540 Brassica napus HOM05D001194 ORTHO05D005909 4.8e-95 351.7 227 78.9
C06p06880 Brassica napus HOM05D001194 ORTHO05D005909 2.0e-93 346.3 232 77.2
BolC6t35794H Brassica oleracea HOM05D001194 ORTHO05D005909 2.0e-93 346.3 232 77.2
BraA06t23435Z Brassica rapa HOM05D001194 ORTHO05D005909 3.4e-93 345.5 232 76.7
COL.COLO4_30608 Corchorus olitorius HOM05D001194 ORTHO05D005909 3.8e-92 342.0 232 77.6
Solyc01g068210.3 Solanum lycopersicum HOM05D001194 ORTHO05D005909 5.0e-92 341.7 240 75.8
Lj3g0000235 Lotus japonicus HOM05D001194 ORTHO05D005909 6.5e-92 341.3 222 75.7
BcaC08g43332 Brassica carinata HOM05D001194 ORTHO05D005909 1.1e-91 340.5 232 76.3
A06p02290 Brassica napus HOM05D001194 ORTHO05D005909 3.2e-91 339.0 232 75.4
SGA_v2.0_scaffold71G23749 Striga asiatica HOM05D001194 ORTHO05D005909 1.2e-90 337.0 224 76.8
Cc04_g02210 Coffea canephora HOM05D001194 ORTHO05D005909 1.6e-90 336.7 218 81.2
Aqoxy7G01307 Aquilegia oxysepala HOM05D001194 ORTHO05D005909 6.1e-90 334.7 235 74.0
ATR0789G185 Amborella trichopoda HOM05D001194 ORTHO05D005909 6.7e-89 331.3 234 73.5
DCAR_031424 Daucus carota HOM05D001194 ORTHO05D005909 3.3e-88 328.9 250 69.6
Sopen01g030150 Solanum pennellii HOM05D001194 ORTHO05D005909 1.8e-86 323.2 240 72.5
Nn6g35406 Nelumbo nucifera HOM05D001194 ORTHO05D005909 1.4e-83 313.5 234 71.8
PGR102G0345 Punica granatum HOM05D001194 ORTHO05D005909 1.4e-83 313.5 238 72.7
PSO832G2057 Papaver somniferum HOM05D001194 ORTHO05D005909 4.2e-83 312.0 233 70.8
PSO063G4370 Papaver somniferum HOM05D001194 ORTHO05D005909 9.4e-83 310.8 233 70.8
CDE05G3462 Ceratophyllum demersum HOM05D001194 ORTHO05D005909 2.1e-82 309.7 226 69.0
HPP92_023231 Vanilla planifolia HOM05D001194 ORTHO05D005909 6.1e-82 308.1 236 68.6
Migut.D00978 Erythranthe guttata HOM05D001194 ORTHO05D005909 1.0e-81 307.4 227 70.5
PGSC0003DMG402006819 Solanum tuberosum HOM05D001194 ORTHO05D005909 6.7e-81 304.7 227 71.8
CDE05G0449 Ceratophyllum demersum HOM05D001194 ORTHO05D005909 1.1e-80 303.9 229 66.8
Actinidia32132 Actinidia chinensis HOM05D001194 ORTHO05D005909 1.5e-80 303.5 231 68.4
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 1.3e-79 300.4 209 78.9
unitig_748.g7452 Utricularia gibba HOM05D001194 ORTHO05D005909 1.8e-78 296.6 261 61.7
MBI04_g06219_MAGBIO Magnolia biondii HOM05D001194 ORTHO05D005909 2.2e-76 289.7 226 67.3
Oeu039980.1 Olea europaea HOM05D001194 ORTHO05D005909 2.7e-74 282.7 188 76.1
Zm00001eb162300 Zea mays HOM05D001194 ORTHO05D005909 1.3e-68 263.8 246 61.4
Os01g0558200 Oryza sativa ssp. japonica HOM05D001194 ORTHO05D005909 5.0e-68 261.9 239 62.8
SEGI_11676 Sequoiadendron giganteum HOM05D001194 ORTHO05D005909 3.6e-66 255.8 262 54.2
Hma1.2p1_0132F.1_g060700 Hydrangea macrophylla HOM05D001194 ORTHO05D005909 9.1e-62 241.1 184 67.4
Mapoly0010s0062 Marchantia polymorpha HOM05D001194 ORTHO05D005909 3.2e-59 232.6 249 53.0
SMO119G0344 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 1.0e-57 227.6 203 59.6
AagrBONN_evm.TU.Sc2ySwM_362.2881 Anthoceros agrestis HOM05D001194 ORTHO05D005909 2.2e-55 219.9 262 47.7
SMO163G0008 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 4.8e-55 218.8 189 59.8
Medtr1g021885 Medicago truncatula HOM05D001194 ORTHO05D005909 1.8e-54 216.9 232 54.3
Actinidia21741 Actinidia chinensis HOM05D001194 ORTHO05D005909 1.3e-52 210.7 144 71.5
SMO347G0060 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 1.9e-51 206.8 197 55.3
Pp3c14_22460 Physcomitrium patens HOM05D001194 ORTHO05D005909 1.2e-50 204.1 217 55.8
Pp3c2_4200 Physcomitrium patens HOM05D001194 ORTHO05D005909 1.6e-50 203.8 212 55.2
Pp3c1_36440 Physcomitrium patens HOM05D001194 ORTHO05D005909 1.0e-49 201.1 215 54.9
TAR383G0515 Trochodendron aralioides HOM05D001194 ORTHO05D005909 2.7e-45 186.4 110 81.8
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 1.1e-35 154.5 244 44.3
BcaC01g01292 Brassica carinata HOM05D001194 ORTHO05D005909 7.8e-29 131.7 79 84.8
GSVIVG01016891001 Vitis vinifera HOM05D001194 ORTHO05D005909 3.5e-21 106.3 59 89.8
BcaC01g01291 Brassica carinata HOM05D001194 ORTHO05D005909 1.5e-16 90.9 94 53.2
Ca_23297_v3 Cicer arietinum L. HOM05D001194 ORTHO05D005909 1.0e-12 78.2 69 62.3
Cpa.g.sc131.31 Carica papaya HOM05D001194 ORTHO05D005909 8.7e-12 75.1 41 87.8
Oeu039981.1 Olea europaea HOM05D001194 ORTHO05D005909 3.3e-11 73.2 41 85.4
SEGI_25027 Sequoiadendron giganteum HOM05D001194 ORTHO05D050892 8.1e-10 68.6 84 38.1


User provided reference genes

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