Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 6.9e-267 923.3 438 100.0
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 2.6e-229 798.5 436 84.9
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 2.8e-228 795.0 435 83.9
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.9e-224 782.3 439 81.8
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 3.2e-224 781.6 441 82.8
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 2.1e-223 778.9 439 82.2
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 3.4e-213 745.0 430 80.0
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 7.5e-213 743.8 430 79.8
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 8.3e-212 740.3 430 79.5
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 1.1e-211 740.0 430 79.1
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 5.9e-210 734.2 439 78.1
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 1.7e-209 732.6 429 78.1
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 2.1e-207 725.7 441 77.1
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 4.7e-207 724.5 433 76.9
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.4e-206 723.0 430 77.4
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 2.3e-206 722.2 433 77.1
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 5.2e-206 721.1 434 77.0
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 5.2e-206 721.1 431 77.5
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 6.8e-206 720.7 428 77.8
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.2e-205 719.9 433 76.9
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 1.5e-205 719.5 436 77.1
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 2.6e-205 718.8 438 76.3
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.6e-205 718.8 431 77.7
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 5.8e-205 717.6 433 76.9
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 9.8e-205 716.8 438 76.0
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 1.3e-204 716.5 437 76.7
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 1.7e-204 716.1 437 76.2
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.2e-204 715.7 428 76.4
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 2.9e-204 715.3 441 77.1
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 2.9e-204 715.3 440 76.1
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 3.7e-204 714.9 437 76.4
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 4.9e-204 714.5 437 76.7
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 8.3e-204 713.8 434 75.3
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 8.3e-204 713.8 429 76.5
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 1.1e-203 713.4 433 75.1
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 1.4e-203 713.0 435 76.1
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 1.4e-203 713.0 410 80.0
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 1.9e-203 712.6 435 75.9
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 1.6e-202 709.5 435 75.4
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.7e-202 708.8 439 77.7
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 4.6e-202 708.0 436 75.9
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 6.0e-202 707.6 437 75.7
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 6.0e-202 707.6 435 74.5
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 1.0e-201 706.8 427 77.8
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 1.3e-201 706.4 439 76.1
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 1.3e-201 706.4 436 75.9
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 1.7e-201 706.1 436 77.8
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 1.7e-201 706.1 434 76.7
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 2.3e-201 705.7 436 75.9
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 3.0e-201 705.3 431 75.6
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 3.9e-201 704.9 431 76.1
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 3.9e-201 704.9 395 81.0
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 3.9e-201 704.9 434 75.8
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 8.6e-201 703.7 434 77.2
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.5e-200 703.0 442 75.6
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 1.9e-200 702.6 435 76.3
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 2.5e-200 702.2 437 75.5
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 2.5e-200 702.2 437 75.3
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.5e-200 702.2 440 76.6
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 3.3e-200 701.8 438 74.7
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 4.3e-200 701.4 430 78.1
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 5.6e-200 701.0 436 77.1
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 5.6e-200 701.0 435 76.1
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 9.5e-200 700.3 436 76.6
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 9.5e-200 700.3 449 73.7
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.2e-199 699.9 410 79.5
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.2e-199 699.9 410 79.8
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.2e-199 699.9 434 76.0
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 1.6e-199 699.5 439 74.5
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.6e-199 699.5 409 78.5
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 2.1e-199 699.1 440 75.0
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 2.1e-199 699.1 436 75.7
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 3.6e-199 698.4 440 75.0
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 3.6e-199 698.4 437 75.1
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 4.7e-199 698.0 437 75.1
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 8.0e-199 697.2 433 76.7
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 1.8e-198 696.0 434 74.0
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 6.8e-198 694.1 438 74.2
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 6.8e-198 694.1 410 79.5
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 8.9e-198 693.7 410 79.5
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 1.2e-197 693.3 410 79.5
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 1.5e-197 693.0 437 73.9
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 3.4e-197 691.8 395 80.0
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 4.4e-197 691.4 437 73.5
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 4.4e-197 691.4 437 76.0
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 4.4e-197 691.4 428 76.4
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 9.8e-197 690.3 436 75.0
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 1.3e-196 689.9 440 74.1
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.9e-196 688.7 428 76.2
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 3.7e-196 688.3 437 75.5
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 4.9e-196 688.0 410 78.8
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.9e-195 686.0 427 75.2
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 2.4e-195 685.6 443 73.4
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.4e-195 685.6 439 73.8
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 4.1e-195 684.9 427 73.8
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 7.0e-195 684.1 509 65.6
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 1.2e-194 683.3 438 73.7
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 1.2e-194 683.3 425 76.0
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 1.6e-194 682.9 410 76.6
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 1.6e-194 682.9 435 74.3
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 2.7e-194 682.2 434 74.4
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 1.5e-192 676.4 365 83.6
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 1.9e-192 676.0 399 77.9
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 2.5e-192 675.6 365 83.6
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 3.3e-192 675.2 432 74.3
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 5.6e-192 674.5 400 77.5
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 4.7e-191 671.4 419 72.6
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 8.1e-191 670.6 434 74.7
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 2.3e-190 669.1 473 68.3
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 4.4e-189 664.8 425 71.5
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 1.5e-184 649.8 357 80.7
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 3.3e-184 648.7 440 70.2
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 3.1e-182 642.1 423 71.2
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 1.3e-180 636.7 440 69.1
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 1.1e-179 633.6 438 68.0
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 1.2e-178 630.2 322 88.5
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 8.7e-177 624.0 298 99.7
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.4e-173 611.7 424 67.5
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 2.4e-171 605.9 322 83.9
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 3.2e-171 605.5 428 67.8
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 4.2e-171 605.1 344 80.5
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 4.0e-166 588.6 388 69.6
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 1.1e-163 580.5 405 68.4
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 4.3e-160 568.5 289 86.9
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.1e-159 566.2 289 86.5
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 1.4e-158 563.5 289 86.5
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 2.3e-153 546.2 338 74.6
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 6.5e-148 528.1 286 80.8
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.8e-145 520.0 334 68.6
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 4.3e-144 515.4 267 87.3
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.4e-142 509.6 390 65.4
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 2.3e-129 466.5 302 74.2
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 4.2e-123 445.7 339 57.5
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 8.8e-121 438.0 285 67.4
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.1e-118 431.0 290 72.1
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 4.5e-109 399.1 342 51.8
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.1e-99 367.9 318 54.4
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.9e-91 340.5 265 63.8
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.6e-90 336.3 332 47.6
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 2.7e-69 266.9 141 83.7
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 2.0e-64 250.8 179 67.0
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 2.0e-56 224.2 119 83.2
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 6.4e-55 219.2 109 88.1
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 3.2e-54 216.9 119 78.2
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.3e-50 204.9 137 68.6
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 5.8e-48 196.1 127 71.7
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.4e-33 147.5 85 77.6
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 6.9e-33 146.0 85 76.5
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 9.3e-30 135.6 80 73.8
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 7.4e-27 125.9 101 60.4
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 1.3e-15 88.6 52 78.8
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 8.2e-10 69.3 110 37.3


User provided reference genes

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