Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 4.3e-98 361.3 180 100.0
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 4.3e-82 308.1 177 82.5
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 9.6e-74 280.4 174 80.5
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 3.7e-73 278.5 179 76.0
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 3.7e-73 278.5 179 77.1
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 3.1e-72 275.4 178 74.7
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 5.3e-72 274.6 179 76.5
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 6.9e-72 274.2 174 77.6
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 1.5e-71 273.1 177 73.4
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 1.5e-71 273.1 179 76.5
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 2.6e-71 272.3 174 77.6
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 5.9e-71 271.2 178 74.2
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 5.9e-71 271.2 173 78.0
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 5.9e-71 271.2 174 78.2
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 1.0e-70 270.4 177 74.6
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 1.3e-70 270.0 174 76.4
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 2.2e-70 269.2 174 77.0
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 2.9e-70 268.9 180 73.3
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.9e-70 268.9 175 73.7
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 8.5e-70 267.3 179 72.6
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 8.5e-70 267.3 174 77.0
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 1.4e-69 266.5 174 76.4
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 1.4e-69 266.5 177 72.9
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 1.9e-69 266.2 174 74.7
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 2.5e-69 265.8 180 73.9
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 3.2e-69 265.4 178 73.6
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 3.2e-69 265.4 174 74.7
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 4.2e-69 265.0 174 74.1
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 4.2e-69 265.0 174 75.3
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 5.5e-69 264.6 173 75.1
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 7.2e-69 264.2 179 73.7
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 7.2e-69 264.2 177 72.3
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 2.1e-68 262.7 174 75.9
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.1e-68 262.7 175 75.4
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.7e-68 262.3 174 73.0
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 4.6e-68 261.5 180 72.2
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 7.9e-68 260.8 177 72.3
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 7.9e-68 260.8 174 74.7
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 1.0e-67 260.4 176 73.3
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 1.8e-67 259.6 175 74.3
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 1.8e-67 259.6 175 73.7
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 2.3e-67 259.2 171 74.3
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 3.0e-67 258.8 153 80.4
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 3.0e-67 258.8 174 74.7
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 3.0e-67 258.8 176 73.9
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 3.9e-67 258.5 173 74.0
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 3.9e-67 258.5 178 70.2
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 5.1e-67 258.1 173 74.0
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 8.7e-67 257.3 176 72.2
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.5e-66 255.8 167 74.3
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.5e-66 255.8 173 74.0
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 2.5e-66 255.8 173 74.0
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 3.3e-66 255.4 174 70.1
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 3.3e-66 255.4 179 71.5
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 3.3e-66 255.4 177 70.1
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 7.4e-66 254.2 153 79.7
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 1.6e-65 253.1 178 71.3
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 2.2e-65 252.7 174 69.0
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 2.8e-65 252.3 180 71.7
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 4.8e-65 251.5 174 71.8
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 4.8e-65 251.5 176 69.9
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 6.3e-65 251.1 173 71.7
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 8.2e-65 250.8 175 70.3
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 8.2e-65 250.8 174 71.8
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 8.2e-65 250.8 174 71.8
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 4.1e-64 248.4 177 69.5
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 9.1e-64 247.3 180 70.0
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 9.1e-64 247.3 177 70.1
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 2.0e-63 246.1 177 68.4
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 2.0e-63 246.1 171 71.3
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.0e-63 246.1 178 66.3
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 2.6e-63 245.7 175 68.0
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 2.6e-63 245.7 164 73.8
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 3.4e-63 245.4 177 68.9
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 7.7e-63 244.2 177 70.1
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 1.7e-62 243.0 174 69.0
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.2e-62 242.7 171 71.3
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 6.5e-62 241.1 178 68.0
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 1.1e-61 240.4 180 65.0
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.4e-61 240.0 178 68.0
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 3.2e-61 238.8 174 67.8
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 4.2e-61 238.4 175 69.1
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 9.4e-61 237.3 155 75.5
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 1.2e-60 236.9 159 75.5
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 1.6e-60 236.5 156 76.3
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 2.7e-60 235.7 175 65.1
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 2.7e-60 235.7 174 67.2
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 6.1e-60 234.6 154 76.6
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 7.9e-60 234.2 163 68.1
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 1.8e-59 233.0 154 77.3
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 3.9e-59 231.9 167 67.7
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 6.7e-59 231.1 177 65.0
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 1.5e-58 229.9 174 66.1
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 1.5e-58 229.9 178 64.6
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 2.0e-58 229.6 174 66.1
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.6e-58 229.2 155 73.5
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 2.6e-58 229.2 164 71.3
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 7.4e-58 227.6 154 73.4
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 9.7e-58 227.3 174 65.5
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.7e-57 226.5 174 64.4
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 6.3e-57 224.6 178 67.4
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 1.1e-56 223.8 182 63.7
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 1.1e-56 223.8 157 73.2
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 1.1e-56 223.8 154 74.0
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 4.1e-56 221.9 136 80.1
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 5.3e-56 221.5 184 62.5
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 9.1e-56 220.7 151 74.2
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 2.0e-55 219.5 153 70.6
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 7.7e-55 217.6 153 72.5
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 2.5e-53 212.6 136 75.7
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 2.5e-53 212.6 157 67.5
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 3.2e-53 212.2 178 61.8
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 3.2e-53 212.2 173 59.0
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 4.2e-53 211.8 175 59.4
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 7.2e-53 211.1 174 60.9
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 2.7e-52 209.1 174 57.5
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 4.7e-52 208.4 174 58.6
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 2.3e-51 206.1 175 55.4
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 3.3e-50 202.2 174 58.0
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 2.4e-48 196.1 174 56.9
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 9.1e-48 194.1 173 59.0
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 1.0e-46 190.7 182 52.7
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 1.0e-46 190.7 173 57.2
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 1.8e-43 179.9 125 71.2
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 4.0e-43 178.7 140 66.4
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 8.8e-43 177.6 113 76.1
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.3e-41 173.7 115 76.5
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 2.4e-40 169.5 174 52.3
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 2.2e-38 162.9 116 69.8
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.1e-37 160.6 176 47.2
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 8.8e-35 151.0 102 75.5
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 8.6e-30 134.4 117 57.3
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 2.5e-29 132.9 152 51.3
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 2.3e-19 99.8 87 63.2
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 4.7e-12 75.5 54 66.7
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 3.5e-07 59.3 38 71.1
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 3.9e-06 55.8 42 61.9
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 8.6e-06 54.7 143 27.3


User provided reference genes

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