Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.4e-148 529.6 272 100.0
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.1e-41 174.5 267 43.4
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 3.4e-38 162.9 281 38.8
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 9.9e-38 161.4 294 39.1
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 2.2e-37 160.2 264 40.2
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 4.9e-37 159.1 277 41.9
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.6e-35 154.1 258 40.3
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 6.6e-34 148.7 269 42.4
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 6.6e-34 148.7 265 38.9
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 8.6e-34 148.3 275 37.8
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 8.6e-34 148.3 300 38.3
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 1.9e-33 147.1 227 41.0
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 2.5e-33 146.7 282 38.3
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 2.1e-32 143.7 261 38.3
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 3.6e-32 142.9 262 36.6
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 4.7e-32 142.5 284 37.3
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 3.1e-31 139.8 286 38.1
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 9.9e-30 134.8 156 47.4
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 1.7e-29 134.0 282 37.2
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 2.2e-29 133.7 296 34.8
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 6.4e-29 132.1 294 36.1
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 8.4e-29 131.7 139 48.2
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.4e-28 131.0 267 36.3
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 2.4e-28 130.2 267 37.1
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 4.2e-28 129.4 289 34.6
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 4.2e-28 129.4 281 35.9
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 7.1e-28 128.6 270 35.6
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 6.0e-27 125.6 296 34.1
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 6.0e-27 125.6 290 35.2
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 7.8e-27 125.2 328 34.5
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 1.3e-26 124.4 179 41.3
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 3.0e-26 123.2 219 40.6
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 3.0e-26 123.2 148 50.0
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 3.0e-26 123.2 275 36.7
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 3.9e-26 122.9 310 32.9
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 5.1e-26 122.5 267 38.6
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.1e-25 121.3 275 33.5
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 1.1e-25 121.3 285 31.9
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 1.9e-25 120.6 287 33.4
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 3.3e-25 119.8 291 35.4
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 5.6e-25 119.0 272 34.2
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 5.6e-25 119.0 291 35.1
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 7.3e-25 118.6 272 33.8
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 9.6e-25 118.2 165 40.6
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 2.1e-24 117.1 270 34.1
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 2.1e-24 117.1 259 37.1
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 2.8e-24 116.7 272 33.5
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 3.6e-24 116.3 165 40.6
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 4.8e-24 115.9 272 33.5
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 6.2e-24 115.5 283 33.2
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 6.2e-24 115.5 304 34.2
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.4e-23 114.4 165 39.4
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 1.8e-23 114.0 292 35.3
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 2.4e-23 113.6 259 36.3
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 3.1e-23 113.2 273 34.8
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 4.0e-23 112.8 266 33.8
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 5.3e-23 112.5 267 34.1
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 6.9e-23 112.1 266 32.7
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 6.9e-23 112.1 303 32.0
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 9.0e-23 111.7 267 33.0
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 9.0e-23 111.7 265 34.7
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 9.0e-23 111.7 301 31.9
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.2e-22 111.3 283 30.7
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 2.0e-22 110.5 280 33.6
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.6e-22 110.2 231 35.5
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 5.8e-22 109.0 296 31.1
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 5.8e-22 109.0 296 33.8
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 9.9e-22 108.2 284 32.4
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 1.3e-21 107.8 293 32.8
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.3e-21 107.8 167 42.5
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 2.2e-21 107.1 272 31.2
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 2.2e-21 107.1 278 30.6
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 2.9e-21 106.7 262 32.4
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 4.9e-21 105.9 169 40.8
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 1.1e-20 104.8 159 41.5
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.1e-20 104.8 270 33.7
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 1.1e-20 104.8 264 30.7
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 2.4e-20 103.6 249 35.3
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 2.4e-20 103.6 281 30.2
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 3.2e-20 103.2 272 32.4
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 3.2e-20 103.2 276 32.6
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 4.2e-20 102.8 277 33.9
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 7.1e-20 102.1 271 35.1
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 7.1e-20 102.1 280 30.0
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 9.3e-20 101.7 262 33.6
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 9.3e-20 101.7 292 30.1
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 1.2e-19 101.3 285 32.6
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 1.2e-19 101.3 286 31.5
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.2e-19 101.3 291 30.6
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 1.6e-19 100.9 138 42.0
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 1.6e-19 100.9 286 32.5
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 1.6e-19 100.9 298 31.9
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 2.1e-19 100.5 270 31.5
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 2.1e-19 100.5 276 28.3
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 3.5e-19 99.8 267 31.1
Sabra03G0031200 Salix brachista HOM05D003500 ORTHO05D003919 4.6e-19 99.4 116 45.7
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 6.0e-19 99.0 293 29.4
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 6.0e-19 99.0 301 29.9
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 1.0e-18 98.2 268 31.0
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 1.8e-18 97.4 175 38.3
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 1.8e-18 97.4 290 29.3
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 2.3e-18 97.1 289 32.9
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 2.3e-18 97.1 324 29.6
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 2.3e-18 97.1 264 31.8
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 3.0e-18 96.7 274 30.3
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 3.9e-18 96.3 263 32.3
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 3.9e-18 96.3 285 32.6
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 6.7e-18 95.5 294 29.9
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 1.1e-17 94.7 278 29.9
CSS0016282 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.9e-17 94.0 138 45.7
CSS0048346 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.9e-17 94.0 138 45.7
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 1.9e-17 94.0 304 31.9
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 2.5e-17 93.6 132 42.4
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 3.3e-17 93.2 301 28.9
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 3.3e-17 93.2 290 30.0
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 4.3e-17 92.8 304 30.6
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 4.3e-17 92.8 263 30.8
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 5.6e-17 92.4 262 30.2
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 7.4e-17 92.0 272 31.2
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 1.3e-16 91.3 274 28.8
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 3.6e-16 89.7 276 31.9
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 3.6e-16 89.7 140 42.9
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 4.8e-16 89.4 140 40.7
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 4.8e-16 89.4 277 30.0
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 6.2e-16 89.0 262 29.4
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 8.1e-16 88.6 174 35.6
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 1.8e-15 87.4 290 28.3
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 2.4e-15 87.0 273 33.7
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 5.3e-15 85.9 298 29.2
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 5.3e-15 85.9 269 28.6
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 5.3e-15 85.9 269 28.6
SHI10927 Sapria himalayana HOM05D003500 ORTHO05D003919 5.3e-15 85.9 125 40.0
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.2e-14 84.7 283 29.3
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 2.0e-14 84.0 297 30.3
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 2.0e-14 84.0 162 37.7
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 4.5e-14 82.8 293 29.0
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 4.5e-14 82.8 297 29.6
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 1.3e-13 81.3 280 32.1
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.3e-13 81.3 295 29.2
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 2.9e-13 80.1 294 29.3
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 8.4e-13 78.6 159 35.2
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.4e-12 77.8 285 30.5
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.9e-12 77.4 287 28.9
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 3.2e-12 76.6 263 26.6
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 3.2e-12 76.6 290 27.6
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 4.2e-12 76.3 284 30.3
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 5.5e-12 75.9 293 30.7
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 9.3e-12 75.1 294 29.9
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 4.6e-11 72.8 286 30.4
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 1.3e-10 71.2 294 29.3
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 1.8e-10 70.9 266 26.3
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 1.8e-10 70.9 280 28.2
unitig_899.g14777 Utricularia gibba HOM05D003500 ORTHO05D003919 1.8e-10 70.9 135 38.5
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 2.3e-10 70.5 265 28.3
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 3.0e-10 70.1 284 27.5
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 3.0e-10 70.1 277 28.2
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 6.7e-10 68.9 280 28.6
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 1.5e-09 67.8 268 26.9
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 1.5e-09 67.8 268 26.9
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 1.5e-09 67.8 303 28.7
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 1.9e-09 67.4 276 26.4
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 5.6e-09 65.9 265 25.7
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 7.4e-09 65.5 276 27.2
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 1.3e-08 64.7 271 25.5
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 1.6e-08 64.3 280 26.4
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 2.8e-08 63.5 309 27.2
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 2.8e-08 63.5 304 27.3
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 8.1e-08 62.0 277 26.7
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 1.4e-07 61.2 175 32.0
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 1.4e-07 61.2 283 26.9
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 1.8e-07 60.8 280 26.4
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 2.4e-07 60.5 271 26.6
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 5.3e-07 59.3 287 27.9
Sabra06G0191500 Salix brachista HOM05D003500 ORTHO05D003919 9.0e-07 58.5 79 43.0
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.5e-06 57.8 194 28.9
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 2.0e-06 57.4 287 25.4
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 5.8e-06 55.8 268 26.1
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 7.6e-06 55.5 274 27.0


User provided reference genes

Program Settings