Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 4.9e-66 254.2 119 100.0
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 3.8e-18 95.1 57 68.4
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 3.2e-17 92.0 51 72.5
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 4.2e-17 91.7 51 70.6
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 9.4e-17 90.5 51 72.5
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 9.4e-17 90.5 51 66.7
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 1.6e-16 89.7 51 64.7
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.1e-16 89.4 51 70.6
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.7e-16 89.0 51 64.7
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.7e-16 89.0 51 70.6
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.7e-16 89.0 51 70.6
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 2.7e-16 89.0 51 64.7
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 2.7e-16 89.0 51 64.7
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 2.7e-16 89.0 51 64.7
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 3.6e-16 88.6 51 66.7
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 4.6e-16 88.2 51 70.6
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 6.1e-16 87.8 51 64.7
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 7.9e-16 87.4 51 68.6
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 7.9e-16 87.4 51 62.7
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 7.9e-16 87.4 51 66.7
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 7.9e-16 87.4 51 66.7
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 1.0e-15 87.0 51 66.7
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 1.4e-15 86.7 51 64.7
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 1.4e-15 86.7 51 68.6
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.4e-15 86.7 51 62.7
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 1.4e-15 86.7 51 62.7
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.4e-15 86.7 51 62.7
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 1.8e-15 86.3 51 66.7
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 1.8e-15 86.3 51 66.7
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.3e-15 85.9 51 60.8
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 3.0e-15 85.5 51 66.7
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 3.0e-15 85.5 51 66.7
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 6.7e-15 84.3 51 62.7
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 8.8e-15 84.0 51 60.8
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 8.8e-15 84.0 51 66.7
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.1e-14 83.6 51 62.7
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 1.1e-14 83.6 51 64.7
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 1.5e-14 83.2 51 64.7
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 1.5e-14 83.2 51 58.8
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 1.5e-14 83.2 51 62.7
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.5e-14 83.2 51 62.7
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 1.5e-14 83.2 51 62.7
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 2.0e-14 82.8 51 62.7
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 2.5e-14 82.4 51 60.8
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 2.5e-14 82.4 48 64.6
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 3.3e-14 82.0 51 60.8
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 3.3e-14 82.0 51 60.8
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 4.3e-14 81.6 51 60.8
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 4.3e-14 81.6 51 60.8
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 4.3e-14 81.6 51 56.9
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 4.3e-14 81.6 51 64.7
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 4.3e-14 81.6 51 64.7
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 4.3e-14 81.6 51 62.7
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 4.3e-14 81.6 51 60.8
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 4.3e-14 81.6 50 62.0
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 7.4e-14 80.9 51 60.8
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 7.4e-14 80.9 51 60.8
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 7.4e-14 80.9 51 60.8
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 7.4e-14 80.9 51 60.8
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 7.4e-14 80.9 51 64.7
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 9.7e-14 80.5 51 58.8
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 9.7e-14 80.5 50 64.0
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 1.3e-13 80.1 51 60.8
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 1.3e-13 80.1 51 60.8
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 1.3e-13 80.1 51 60.8
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.3e-13 80.1 51 58.8
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.7e-13 79.7 57 57.9
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 1.7e-13 79.7 50 58.0
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 1.7e-13 79.7 51 60.8
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 1.7e-13 79.7 51 60.8
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 1.7e-13 79.7 51 56.9
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 2.2e-13 79.3 51 56.9
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 2.2e-13 79.3 51 56.9
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.2e-13 79.3 50 60.0
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 2.2e-13 79.3 51 58.8
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 2.8e-13 79.0 51 58.8
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 2.8e-13 79.0 51 58.8
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 2.8e-13 79.0 51 58.8
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 2.8e-13 79.0 51 58.8
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 2.8e-13 79.0 51 58.8
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 2.8e-13 79.0 51 60.8
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.7e-13 78.6 51 60.8
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 3.7e-13 78.6 51 62.7
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 3.7e-13 78.6 51 56.9
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 4.8e-13 78.2 50 60.0
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 4.8e-13 78.2 52 61.5
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 4.8e-13 78.2 51 58.8
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 6.3e-13 77.8 51 56.9
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 6.3e-13 77.8 50 62.0
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 6.3e-13 77.8 51 52.9
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 8.2e-13 77.4 51 58.8
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 8.2e-13 77.4 51 58.8
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 8.2e-13 77.4 51 56.9
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 1.1e-12 77.0 51 58.8
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 1.1e-12 77.0 51 54.9
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 1.1e-12 77.0 51 54.9
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 1.1e-12 77.0 51 54.9
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 1.1e-12 77.0 51 60.8
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 1.1e-12 77.0 51 56.9
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 1.4e-12 76.6 51 56.9
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.4e-12 76.6 51 58.8
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.4e-12 76.6 51 58.8
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 1.4e-12 76.6 51 60.8
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 1.4e-12 76.6 52 61.5
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 1.8e-12 76.3 50 56.0
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 1.8e-12 76.3 50 56.0
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 1.8e-12 76.3 50 58.0
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.8e-12 76.3 50 58.0
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.8e-12 76.3 50 58.0
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.8e-12 76.3 50 58.0
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 1.8e-12 76.3 51 56.9
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 1.8e-12 76.3 51 62.7
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 1.8e-12 76.3 52 61.5
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 2.4e-12 75.9 50 56.0
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 2.4e-12 75.9 51 58.8
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.4e-12 75.9 51 58.8
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.4e-12 75.9 51 58.8
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 2.4e-12 75.9 51 58.8
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 2.4e-12 75.9 50 58.0
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 2.4e-12 75.9 50 60.0
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 2.4e-12 75.9 51 58.8
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 2.4e-12 75.9 57 52.6
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 3.1e-12 75.5 51 60.8
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 3.1e-12 75.5 51 56.9
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 4.1e-12 75.1 51 60.8
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 4.1e-12 75.1 51 54.9
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 4.1e-12 75.1 50 58.0
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 4.1e-12 75.1 51 56.9
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 4.1e-12 75.1 51 60.8
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 5.3e-12 74.7 50 56.0
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 5.3e-12 74.7 50 56.0
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 6.9e-12 74.3 51 56.9
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 9.1e-12 73.9 51 51.0
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 9.1e-12 73.9 51 58.8
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 9.1e-12 73.9 51 58.8
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 9.1e-12 73.9 51 60.8
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 9.1e-12 73.9 51 58.8
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.2e-11 73.6 50 56.0
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 1.2e-11 73.6 51 58.8
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 1.2e-11 73.6 50 56.0
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 1.2e-11 73.6 51 60.8
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.5e-11 73.2 51 56.9
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 1.5e-11 73.2 51 56.9
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.0e-11 72.8 50 56.0
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 2.0e-11 72.8 50 56.0
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 2.6e-11 72.4 51 54.9
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 2.6e-11 72.4 50 56.0
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 2.6e-11 72.4 51 56.9
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 3.4e-11 72.0 51 54.9
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 3.4e-11 72.0 51 58.8
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 5.9e-11 71.2 51 56.9
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 5.9e-11 71.2 51 56.9
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 2.2e-10 69.3 52 53.8
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 9.4e-09 63.9 50 52.0
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 3.6e-08 62.0 51 56.9
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 4.4e-06 55.1 51 45.1


User provided reference genes

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