Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 6.5e-243 843.6 410 100.0
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 4.9e-182 641.3 381 79.5
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 7.1e-181 637.5 388 76.8
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 5.6e-178 627.9 375 78.9
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 1.4e-176 623.2 396 75.0
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 4.0e-176 621.7 420 72.1
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 4.0e-176 621.7 375 78.1
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 6.9e-176 620.9 386 76.2
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 6.9e-176 620.9 408 73.8
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 9.0e-176 620.5 428 71.5
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 2.0e-175 619.4 373 76.9
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 2.0e-175 619.4 377 77.2
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 2.6e-175 619.0 375 77.9
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 3.4e-175 618.6 410 71.5
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 3.4e-175 618.6 377 76.1
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 4.4e-175 618.2 393 75.6
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 7.6e-175 617.5 375 77.9
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 7.6e-175 617.5 375 77.9
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 1.7e-174 616.3 408 74.3
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 1.7e-174 616.3 361 79.2
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 2.2e-174 615.9 377 76.4
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 2.9e-174 615.5 377 76.7
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 2.9e-174 615.5 408 73.8
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 3.8e-174 615.1 398 73.9
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 4.9e-174 614.8 387 77.0
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 8.4e-174 614.0 377 76.7
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 1.1e-173 613.6 377 75.9
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.9e-173 612.8 377 75.9
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 2.4e-173 612.5 404 72.8
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 3.2e-173 612.1 385 74.5
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 4.2e-173 611.7 404 74.8
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 4.2e-173 611.7 386 75.1
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 7.1e-173 610.9 407 71.5
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 7.1e-173 610.9 379 76.0
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 9.3e-173 610.5 400 73.0
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 1.6e-172 609.8 388 75.0
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 1.6e-172 609.8 412 71.1
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 3.5e-172 608.6 386 74.4
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 7.8e-172 607.4 375 77.3
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.0e-171 607.1 377 75.3
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 3.0e-171 605.5 396 74.7
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 3.9e-171 605.1 398 71.4
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 5.1e-171 604.7 384 75.0
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 8.7e-171 604.0 380 75.8
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 1.5e-170 603.2 394 72.3
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 1.5e-170 603.2 373 77.2
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 2.5e-170 602.4 398 71.1
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 2.5e-170 602.4 398 71.1
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 3.3e-170 602.1 384 73.4
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 3.3e-170 602.1 375 76.5
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 5.6e-170 601.3 389 73.3
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 9.6e-170 600.5 350 80.0
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 9.6e-170 600.5 402 72.1
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 2.1e-169 599.4 381 73.2
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 3.6e-169 598.6 390 73.8
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 4.8e-169 598.2 387 72.9
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 6.2e-169 597.8 376 73.9
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 6.2e-169 597.8 377 73.5
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 1.1e-168 597.0 399 73.2
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 1.4e-168 596.7 410 69.8
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 3.1e-168 595.5 382 73.6
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 3.1e-168 595.5 394 71.8
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 3.1e-168 595.5 375 76.0
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 9.0e-168 594.0 359 77.2
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 9.0e-168 594.0 386 73.6
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 9.0e-168 594.0 398 71.1
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 5.8e-167 591.3 378 74.6
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 5.8e-167 591.3 377 73.5
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 5.8e-167 591.3 402 71.1
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 7.6e-167 590.9 378 74.6
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 7.6e-167 590.9 377 72.1
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 9.9e-167 590.5 378 75.4
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 1.3e-166 590.1 378 74.3
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 1.3e-166 590.1 378 74.3
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 1.3e-166 590.1 377 73.2
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 1.3e-166 590.1 378 74.3
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 1.3e-166 590.1 389 72.8
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 1.3e-166 590.1 355 77.5
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 2.2e-166 589.3 380 73.2
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 2.9e-166 589.0 377 72.9
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 2.9e-166 589.0 397 71.3
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 2.9e-166 589.0 395 70.9
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 3.8e-166 588.6 379 72.3
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 4.9e-166 588.2 377 72.9
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 4.9e-166 588.2 377 72.9
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 4.9e-166 588.2 377 72.1
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 6.4e-166 587.8 406 69.5
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 1.4e-165 586.6 377 72.4
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 1.9e-165 586.3 377 72.4
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 2.4e-165 585.9 379 71.8
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 3.2e-165 585.5 377 72.7
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 3.2e-165 585.5 375 74.7
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 4.2e-165 585.1 387 71.8
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 4.2e-165 585.1 380 72.9
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 7.1e-165 584.3 378 72.5
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 7.1e-165 584.3 385 74.5
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 9.3e-165 583.9 378 73.3
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 1.6e-164 583.2 377 72.7
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 1.6e-164 583.2 384 72.4
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 1.6e-164 583.2 397 70.5
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 4.6e-164 581.6 377 73.5
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 7.9e-164 580.9 379 72.8
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 8.7e-163 577.4 374 71.4
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 1.5e-162 576.6 379 72.0
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 2.5e-162 575.9 357 75.6
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 4.3e-162 575.1 367 71.7
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 8.1e-161 570.9 408 66.9
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 1.8e-160 569.7 373 71.8
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 4.5e-159 565.1 409 68.0
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 2.9e-158 562.4 342 75.7
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 3.2e-157 558.9 318 82.4
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 1.2e-156 557.0 398 67.1
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 3.7e-153 545.4 369 68.0
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 9.0e-152 540.8 363 71.9
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 1.2e-151 540.4 340 72.4
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 1.0e-150 537.3 394 65.5
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 2.9e-150 535.8 329 76.3
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 1.6e-145 520.0 337 70.6
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 5.1e-139 498.4 411 62.5
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 8.2e-137 491.1 361 65.9
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 8.2e-129 464.5 362 62.4
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 1.1e-128 464.2 337 66.2
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 9.1e-128 461.1 295 72.2
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 1.5e-125 453.8 329 62.0
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 2.0e-122 443.4 354 59.9
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 2.2e-121 439.9 343 61.2
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 3.5e-119 432.6 339 58.7
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 1.5e-117 427.2 330 61.8
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 2.1e-116 423.3 336 56.8
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 9.8e-114 414.5 247 80.2
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 5.4e-112 408.7 269 71.0
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 5.9e-111 405.2 330 56.7
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 3.1e-104 382.9 330 53.3
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 1.0e-91 341.3 330 48.8
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 1.5e-85 320.9 276 59.4
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 1.9e-85 320.5 350 45.4
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 3.2e-80 303.1 281 57.3
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 3.5e-79 299.7 326 47.2
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 3.8e-65 253.1 145 83.4
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 1.7e-62 244.2 129 85.3
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 6.6e-54 215.7 200 57.5
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 4.3e-37 159.8 164 43.9
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 2.1e-36 157.5 164 43.3
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.1e-35 155.2 283 36.0
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.5e-34 151.4 119 64.7
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 1.7e-33 147.9 81 84.0
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 1.1e-29 135.2 95 70.5
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 1.0e-25 122.1 123 49.6
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 2.0e-21 107.8 104 52.9
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 6.5e-17 92.8 82 53.7
Pp3c21_6430 Physcomitrium patens HOM05D004738 ORTHO05D314778 8.5e-09 65.9 52 48.1


User provided reference genes

Program Settings