Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 1.5e-56 222.6 112 100.0
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 4.6e-42 174.5 105 86.7
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 1.9e-27 125.9 89 70.8
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 1.6e-26 122.9 111 56.8
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 8.0e-26 120.6 94 64.9
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 1.8e-25 119.4 110 54.5
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 3.9e-25 118.2 90 66.7
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 5.2e-25 117.9 110 54.5
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 8.8e-25 117.1 105 57.1
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 1.5e-24 116.3 110 55.5
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 2.6e-24 115.5 94 62.8
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 2.6e-24 115.5 105 56.2
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 3.3e-24 115.2 106 60.4
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 3.3e-24 115.2 92 62.0
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 3.3e-24 115.2 94 62.8
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 3.3e-24 115.2 110 54.5
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 3.3e-24 115.2 113 55.8
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 5.7e-24 114.4 91 62.6
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 7.4e-24 114.0 94 61.7
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 7.4e-24 114.0 109 56.9
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 9.7e-24 113.6 110 53.6
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 1.3e-23 113.2 110 53.6
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 1.7e-23 112.8 92 59.8
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 2.2e-23 112.5 112 52.7
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 2.2e-23 112.5 105 57.1
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 3.7e-23 111.7 97 57.7
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 6.3e-23 110.9 110 52.7
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 6.3e-23 110.9 92 59.8
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 6.3e-23 110.9 94 60.6
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 8.2e-23 110.5 97 55.7
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 1.4e-22 109.8 112 54.5
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 1.8e-22 109.4 97 56.7
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 1.8e-22 109.4 92 58.7
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 2.4e-22 109.0 90 57.8
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 2.4e-22 109.0 84 65.5
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 2.4e-22 109.0 111 52.3
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 3.1e-22 108.6 110 51.8
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 3.1e-22 108.6 110 51.8
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 3.1e-22 108.6 111 51.4
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 4.1e-22 108.2 103 53.4
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 4.1e-22 108.2 92 62.0
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 1.6e-21 106.3 111 49.5
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 2.0e-21 105.9 99 53.5
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 2.6e-21 105.5 92 56.5
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 3.5e-21 105.1 110 49.1
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 3.5e-21 105.1 104 49.0
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 3.5e-21 105.1 104 51.0
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 3.5e-21 105.1 107 53.3
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 3.5e-21 105.1 92 57.6
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 4.5e-21 104.8 91 58.2
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 5.9e-21 104.4 97 53.6
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 1.7e-20 102.8 98 53.1
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 1.7e-20 102.8 112 50.9
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 2.2e-20 102.4 97 53.6
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 2.9e-20 102.1 88 56.8
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 2.9e-20 102.1 100 54.0
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 5.0e-20 101.3 109 49.5
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 6.5e-20 100.9 90 54.4
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 1.1e-19 100.1 90 55.6
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 1.9e-19 99.4 90 55.6
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 2.5e-19 99.0 90 52.2
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 2.5e-19 99.0 86 59.3
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 4.2e-19 98.2 103 45.6
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 7.2e-19 97.4 110 48.2
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 1.2e-18 96.7 113 46.0
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 1.6e-18 96.3 111 48.6
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 2.7e-18 95.5 82 57.3
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 2.7e-18 95.5 100 48.0
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 2.7e-18 95.5 86 53.5
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 2.7e-18 95.5 86 53.5
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 3.6e-18 95.1 90 57.8
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 8.0e-18 94.0 95 56.8
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 8.0e-18 94.0 88 55.7
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 4.0e-17 91.7 102 48.0
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 6.7e-17 90.9 94 54.3
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 1.5e-16 89.7 94 55.3
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 4.4e-16 88.2 107 43.9
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 8.2e-15 84.0 110 42.7
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 1.1e-14 83.6 107 42.1
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 3.1e-14 82.0 88 47.7
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 5.3e-14 81.3 85 54.1
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 1.2e-13 80.1 83 53.0
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 5.0e-12 74.7 98 46.9
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 8.5e-12 73.9 91 41.8
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 6.1e-10 67.8 82 47.6
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 4.0e-09 65.1 87 43.7
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 6.3e-07 57.8 88 38.6


User provided reference genes

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