Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0008410 Simmondsia chinensis HOM05D000172 ORTHO05D388069 3.4e-53 211.5 110 100.0
Sc12g0002030 Simmondsia chinensis HOM05D000172 ORTHO05D004529 8.1e-15 84.0 53 77.4
Duzib133G0852 Durio zibethinus HOM05D000172 ORTHO05D004529 1.4e-14 83.2 53 77.4
Duzib138G0538 Durio zibethinus HOM05D000172 ORTHO05D004529 2.4e-14 82.4 66 65.2
Gohir.A11G152400 Gossypium hirsutum HOM05D000172 ORTHO05D004529 5.2e-14 81.3 53 75.5
Gohir.D11G159300 Gossypium hirsutum HOM05D000172 ORTHO05D004529 5.2e-14 81.3 53 75.5
Gorai.007G169700 Gossypium raimondii HOM05D000172 ORTHO05D004529 5.2e-14 81.3 53 75.5
Thecc.01G183900 Theobroma cacao HOM05D000172 ORTHO05D004529 6.9e-14 80.9 53 75.5
Nitab4.5_0000130g0060 Nicotiana tabacum HOM05D000172 ORTHO05D004529 2.6e-13 79.0 68 60.3
Cfa014306 Carpinus fangiana HOM05D000172 ORTHO05D004529 3.4e-13 78.6 55 70.9
Psat2g026680 Pisum sativum HOM05D000172 ORTHO05D004529 3.4e-13 78.6 55 70.9
Rhsim06G0169300 Rhododendron simsii HOM05D000172 ORTHO05D004529 3.4e-13 78.6 55 72.7
Cc05_g02520 Coffea canephora HOM05D000172 ORTHO05D004529 4.4e-13 78.2 55 72.7
Haze_12753 Corylus avellana HOM05D000172 ORTHO05D004529 4.4e-13 78.2 68 61.8
Lalb_Chr10g0105541 Lupinus albus HOM05D000172 ORTHO05D004529 5.8e-13 77.8 55 70.9
Sed0016451 Sechium edule HOM05D000172 ORTHO05D004529 5.8e-13 77.8 55 70.9
CAN.G1254.2 Capsicum annuum HOM05D000172 ORTHO05D004529 7.6e-13 77.4 68 58.8
RcHm_v2.0_Chr2g0157821 Rosa chinensis HOM05D000172 ORTHO05D004529 7.6e-13 77.4 68 60.3
CSS0041321 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D004529 9.9e-13 77.0 55 70.9
CANSAT64G0513 Cannabis sativa HOM05D000172 ORTHO05D004529 9.9e-13 77.0 66 59.1
ClCG02G018150 Citrullus lanatus HOM05D000172 ORTHO05D004529 9.9e-13 77.0 51 74.5
MELO3C019722.2 Cucumis melo HOM05D000172 ORTHO05D004529 9.9e-13 77.0 68 58.8
Dinv08710 Davidia involucrata HOM05D000172 ORTHO05D004529 9.9e-13 77.0 55 70.9
TPR.G25669 Trifolium pratense HOM05D000172 ORTHO05D004529 9.9e-13 77.0 68 60.3
Manes.12G068300 Manihot esculenta HOM05D000172 ORTHO05D004529 1.3e-12 76.6 55 69.1
PGR142G0986 Punica granatum HOM05D000172 ORTHO05D004529 1.3e-12 76.6 66 57.6
CSS0045460 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D004529 1.7e-12 76.3 55 70.9
Cpa.g.sc132.36 Carica papaya HOM05D000172 ORTHO05D004529 1.7e-12 76.3 66 59.1
FAN03G0606 Fragaria x ananassa HOM05D000172 ORTHO05D004529 1.7e-12 76.3 55 69.1
Lalb_Chr04g0250171 Lupinus albus HOM05D000172 ORTHO05D004529 1.7e-12 76.3 55 69.1
MD17G1107800 Malus domestica HOM05D000172 ORTHO05D004529 1.7e-12 76.3 55 69.1
PGSC0003DMG400000661 Solanum tuberosum HOM05D000172 ORTHO05D004529 1.7e-12 76.3 68 57.4
arahy.Tifrunner.gnm1.ann1.0SG038 Arachis hypogaea HOM05D000172 ORTHO05D004529 2.2e-12 75.9 55 69.1
arahy.Tifrunner.gnm1.ann1.0YR97U Arachis hypogaea HOM05D000172 ORTHO05D004529 2.2e-12 75.9 55 69.1
Eucgr.K00732 Eucalyptus grandis HOM05D000172 ORTHO05D004529 2.2e-12 75.9 68 57.4
Lj1A784T46 Lonicera japonica HOM05D000172 ORTHO05D004529 2.2e-12 75.9 68 57.4
Medtr5g084930 Medicago truncatula HOM05D000172 ORTHO05D004529 2.2e-12 75.9 68 58.8
Peaxi162Scf01333g00016 Petunia axillaris HOM05D000172 ORTHO05D004529 2.2e-12 75.9 68 58.8
QL08p030114 Quercus lobata HOM05D000172 ORTHO05D004529 2.2e-12 75.9 68 57.4
HPP92_018317 Vanilla planifolia HOM05D000172 ORTHO05D004529 2.2e-12 75.9 68 58.8
Atru.chr6.3272 Acer truncatum HOM05D000172 ORTHO05D004529 2.9e-12 75.5 53 71.7
CiPaw.04G108900 Carya illinoinensis HOM05D000172 ORTHO05D004529 2.9e-12 75.5 55 69.1
Migut.H01249 Erythranthe guttata HOM05D000172 ORTHO05D004529 2.9e-12 75.5 68 58.8
FvH4_6g41940 Fragaria vesca HOM05D000172 ORTHO05D004529 2.9e-12 75.5 68 58.8
FAN14G3661 Fragaria x ananassa HOM05D000172 ORTHO05D004529 2.9e-12 75.5 68 58.8
Prupe.3G208600 Prunus persica HOM05D000172 ORTHO05D004529 2.9e-12 75.5 53 67.9
CiPaw.03G153600 Carya illinoinensis HOM05D000172 ORTHO05D004529 3.8e-12 75.1 53 71.7
Ca_06051_v3 Cicer arietinum L. HOM05D000172 ORTHO05D004529 3.8e-12 75.1 68 58.8
Glyma.02G266900 Glycine max HOM05D000172 ORTHO05D004529 3.8e-12 75.1 68 58.8
Potri.014G160000 Populus trichocarpa HOM05D000172 ORTHO05D004529 3.8e-12 75.1 53 69.8
Sed0015934 Sechium edule HOM05D000172 ORTHO05D004529 3.8e-12 75.1 68 57.4
TWI36G0304 Tripterygium wilfordii HOM05D000172 ORTHO05D004529 3.8e-12 75.1 55 67.3
GSVIVG01030525001 Vitis vinifera HOM05D000172 ORTHO05D004529 3.8e-12 75.1 53 69.8
CDE07G0353 Ceratophyllum demersum HOM05D000172 ORTHO05D004529 4.9e-12 74.7 68 58.8
Ciclev10015327m.g Citrus clementina HOM05D000172 ORTHO05D004529 4.9e-12 74.7 66 57.6
FAN02G0745 Fragaria x ananassa HOM05D000172 ORTHO05D004529 4.9e-12 74.7 64 60.9
FAN09G3260 Fragaria x ananassa HOM05D000172 ORTHO05D004529 4.9e-12 74.7 64 60.9
MD09G1116100 Malus domestica HOM05D000172 ORTHO05D004529 4.9e-12 74.7 68 57.4
SGA_v2.0_scaffold49G18360 Striga asiatica HOM05D000172 ORTHO05D004529 4.9e-12 74.7 68 57.4
TWI18G0101 Tripterygium wilfordii HOM05D000172 ORTHO05D004529 4.9e-12 74.7 55 65.5
HPP92_018301 Vanilla planifolia HOM05D000172 ORTHO05D004529 4.9e-12 74.7 66 59.1
TWI75G1599 Tripterygium wilfordii HOM05D000172 ORTHO05D004529 6.4e-12 74.3 55 67.3
VMungo0647G1522 Vigna mungo HOM05D000172 ORTHO05D004529 6.4e-12 74.3 68 58.8
MSTRG.14865 Avicennia marina HOM05D000172 ORTHO05D004529 8.4e-12 73.9 55 67.3
COL.COLO4_07252 Corchorus olitorius HOM05D000172 ORTHO05D004529 8.4e-12 73.9 64 57.8
Solyc07g049450.3 Solanum lycopersicum HOM05D000172 ORTHO05D004529 8.4e-12 73.9 68 55.9
Sopen07g024800 Solanum pennellii HOM05D000172 ORTHO05D004529 8.4e-12 73.9 68 55.9
Thhalv10007682m.g Eutrema salsugineum HOM05D000172 ORTHO05D004529 1.1e-11 73.6 55 63.6
Glyma.14G050600 Glycine max HOM05D000172 ORTHO05D004529 1.1e-11 73.6 68 58.8
Hma1.2p1_0445F.1_g154200 Hydrangea macrophylla HOM05D000172 ORTHO05D004529 1.1e-11 73.6 68 55.9
Hma1.2p1_2840F.1_g329340 Hydrangea macrophylla HOM05D000172 ORTHO05D004529 1.1e-11 73.6 68 55.9
Phvul.008G215100 Phaseolus vulgaris HOM05D000172 ORTHO05D004529 1.1e-11 73.6 68 58.8
Actinidia09754 Actinidia chinensis HOM05D000172 ORTHO05D004529 1.4e-11 73.2 68 57.4
ATR1128G012 Amborella trichopoda HOM05D000172 ORTHO05D004529 1.4e-11 73.2 53 69.8
AUR62017578 Chenopodium quinoa HOM05D000172 ORTHO05D004529 1.4e-11 73.2 66 57.6
Gohir.D07G174500 Gossypium hirsutum HOM05D000172 ORTHO05D004529 1.4e-11 73.2 53 66.0
Oeu010999.1 Olea europaea HOM05D000172 ORTHO05D004529 1.4e-11 73.2 68 57.4
CDE04G1854 Ceratophyllum demersum HOM05D000172 ORTHO05D004529 1.9e-11 72.8 68 57.4
AUR62015115 Chenopodium quinoa HOM05D000172 ORTHO05D004529 1.9e-11 72.8 66 56.1
LjContig00029g0026614 Lotus japonicus HOM05D000172 ORTHO05D004529 1.9e-11 72.8 55 65.5
Sp1g03850 Schrenkiella parvula HOM05D000172 ORTHO05D004529 1.9e-11 72.8 55 63.6
Lalb_Chr17g0347161 Lupinus albus HOM05D000172 ORTHO05D004529 2.4e-11 72.4 55 65.5
unitig_578.g16013 Utricularia gibba HOM05D000172 ORTHO05D004529 2.4e-11 72.4 68 55.9
Sabra14G0121700 Salix brachista HOM05D000172 ORTHO05D004529 3.2e-11 72.0 66 56.1
Hund24209 Selenicereus undatus HOM05D000172 ORTHO05D004529 3.2e-11 72.0 66 54.5
PSO832G1111 Papaver somniferum HOM05D000172 ORTHO05D004529 4.2e-11 71.6 66 56.1
AL1G14710 Arabidopsis lyrata HOM05D000172 ORTHO05D004529 5.4e-11 71.2 55 61.8
CsaV3_6G015540 Cucumis sativus L. HOM05D000172 ORTHO05D004529 5.4e-11 71.2 68 55.9
Aqoxy1G02876 Aquilegia oxysepala HOM05D000172 ORTHO05D004529 7.1e-11 70.9 68 57.4
A10p03460 Brassica napus HOM05D000172 ORTHO05D004529 7.1e-11 70.9 68 51.5
C05p03170 Brassica napus HOM05D000172 ORTHO05D004529 7.1e-11 70.9 68 51.5
BolC5t29097H Brassica oleracea HOM05D000172 ORTHO05D004529 7.1e-11 70.9 68 51.5
BraA10t42622Z Brassica rapa HOM05D000172 ORTHO05D004529 7.1e-11 70.9 68 51.5
MBI16_g26178_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D004529 7.1e-11 70.9 64 56.2
MSTRG.14127 Avicennia marina HOM05D000172 ORTHO05D004529 9.3e-11 70.5 68 55.9
Gorai.001G195100 Gossypium raimondii HOM05D000172 ORTHO05D004529 1.2e-10 70.1 51 64.7
Nn1g03356 Nelumbo nucifera HOM05D000172 ORTHO05D004529 1.2e-10 70.1 55 65.5
THA.LOC104826128 Tarenaya hassleriana HOM05D000172 ORTHO05D004529 1.2e-10 70.1 68 52.9
Ah.14g083060 Amaranthus hybridus HOM05D000172 ORTHO05D004529 1.6e-10 69.7 66 54.5
AT1G04980 Arabidopsis thaliana HOM05D000172 ORTHO05D004529 1.6e-10 69.7 55 60.0
EL10Ac9g22817 Beta vulgaris HOM05D000172 ORTHO05D004529 1.6e-10 69.7 66 54.5
Lsat_1_v5_gn_2_16921 Lactuca sativa HOM05D000172 ORTHO05D004529 1.6e-10 69.7 66 56.1
Oeu054513.2 Olea europaea HOM05D000172 ORTHO05D004529 1.6e-10 69.7 64 56.2
SalBow1G3887 Salvia bowleyana HOM05D000172 ORTHO05D004529 1.6e-10 69.7 64 54.7
SalBow1G7178 Salvia bowleyana HOM05D000172 ORTHO05D004529 1.6e-10 69.7 64 54.7
Carub.0001s0422 Capsella rubella HOM05D000172 ORTHO05D004529 2.1e-10 69.3 55 60.0
CARHR004390 Cardamine hirsuta HOM05D000172 ORTHO05D004529 2.1e-10 69.3 68 50.0
DCAR_021129 Daucus carota HOM05D000172 ORTHO05D004529 2.7e-10 68.9 55 61.8
Lsat_1_v5_gn_9_105181 Lactuca sativa HOM05D000172 ORTHO05D004529 2.7e-10 68.9 66 56.1
Nn1g07319 Nelumbo nucifera HOM05D000172 ORTHO05D004529 2.7e-10 68.9 53 66.0
PSO210G3915 Papaver somniferum HOM05D000172 ORTHO05D004529 2.7e-10 68.9 66 53.0
Zm00001eb100620 Zea mays HOM05D000172 ORTHO05D004529 3.5e-10 68.6 55 60.0
Zm00001eb314620 Zea mays HOM05D000172 ORTHO05D004529 4.6e-10 68.2 55 60.0
Aa31LG1G19810 Aethionema arabicum HOM05D000172 ORTHO05D004529 7.8e-10 67.4 55 58.2
Gohir.A07G168200 Gossypium hirsutum HOM05D000172 ORTHO05D004529 7.8e-10 67.4 53 62.3
HanXRQChr14g0429281 Helianthus annuus HOM05D000172 ORTHO05D004529 7.8e-10 67.4 66 54.5
Lsat_1_v5_gn_1_87821 Lactuca sativa HOM05D000172 ORTHO05D004529 7.8e-10 67.4 66 53.0
THA.LOC104801013 Tarenaya hassleriana HOM05D000172 ORTHO05D004529 1.0e-09 67.0 68 51.5
vmacro12149 Vaccinium macrocarpon HOM05D000172 ORTHO05D004529 1.0e-09 67.0 47 70.2
VMungo0331G0799 Vigna mungo HOM05D000172 ORTHO05D004529 1.3e-09 66.6 66 54.5
Carub.0004s1435 Capsella rubella HOM05D000172 ORTHO05D004529 1.7e-09 66.2 51 58.8
ECA240G4132 Erigeron canadensis HOM05D002544 ORTHO05D004529 1.7e-09 66.2 53 62.3
SHI10092 Sapria himalayana HOM05D000172 ORTHO05D004529 1.7e-09 66.2 55 56.4
AL4G28440 Arabidopsis lyrata HOM05D000172 ORTHO05D004529 2.3e-09 65.9 51 60.8
AT2G32920 Arabidopsis thaliana HOM05D000172 ORTHO05D004529 2.3e-09 65.9 51 60.8
Os09g0451500 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D004529 2.3e-09 65.9 55 58.2
Aa31LG5G4580 Aethionema arabicum HOM05D000172 ORTHO05D004529 3.9e-09 65.1 51 60.8
TAR624G0902 Trochodendron aralioides HOM05D000172 ORTHO05D004529 3.9e-09 65.1 64 53.1
TAR629G0025 Trochodendron aralioides HOM05D000172 ORTHO05D004529 3.9e-09 65.1 47 66.0
C03p21560 Brassica napus HOM05D000172 ORTHO05D004529 5.1e-09 64.7 51 60.8
CARHR126850 Cardamine hirsuta HOM05D000172 ORTHO05D004529 5.1e-09 64.7 51 58.8
Sp4g15280 Schrenkiella parvula HOM05D000172 ORTHO05D004529 5.1e-09 64.7 51 60.8
DCAR_019739 Daucus carota HOM05D000172 ORTHO05D004529 1.1e-08 63.5 68 47.1
BcaC01g05872 Brassica carinata HOM05D000172 ORTHO05D004529 1.9e-08 62.8 51 58.8
Thhalv10016663m.g Eutrema salsugineum HOM05D000172 ORTHO05D004529 2.5e-08 62.4 64 48.4
BcaB01g03946 Brassica carinata HOM05D000172 ORTHO05D004529 4.3e-08 61.6 64 48.4
A05p12720 Brassica napus HOM05D000172 ORTHO05D004529 4.3e-08 61.6 51 56.9
C04p16640 Brassica napus HOM05D000172 ORTHO05D004529 4.3e-08 61.6 51 56.9
BolC4t23214H Brassica oleracea HOM05D000172 ORTHO05D004529 4.3e-08 61.6 51 56.9
BraA05t20211Z Brassica rapa HOM05D000172 ORTHO05D004529 4.3e-08 61.6 51 56.9
BcaB02g10506 Brassica carinata HOM05D000172 ORTHO05D004529 5.6e-08 61.2 50 58.0
Lj8A130T58 Lonicera japonica HOM05D000172 ORTHO05D004529 8.1e-07 57.4 42 64.3
Pp3c4_12030 Physcomitrium patens HOM05D000172 ORTHO05D004529 3.1e-06 55.5 66 45.5
CBR_g42180 Chara braunii HOM05D000172 ORTHO05D004529 6.9e-06 54.3 51 54.9
Mapoly0041s0078 Marchantia polymorpha HOM05D000172 ORTHO05D004529 6.9e-06 54.3 48 52.1


User provided reference genes

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