Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 9.4e-56 219.9 109 100.0
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 3.6e-39 164.9 90 92.2
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 2.5e-32 142.1 90 76.7
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 2.5e-32 142.1 90 78.9
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 2.7e-31 138.7 92 73.9
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 3.6e-31 138.3 90 74.4
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 6.1e-31 137.5 90 74.4
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 1.0e-30 136.7 90 73.3
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 1.4e-30 136.3 90 74.4
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 1.4e-30 136.3 90 74.4
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.4e-30 136.3 90 74.4
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.4e-30 136.3 90 74.4
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 1.4e-30 136.3 101 66.3
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 1.4e-30 136.3 90 73.3
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 1.8e-30 136.0 91 73.6
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 1.8e-30 136.0 90 74.4
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 2.3e-30 135.6 94 69.1
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 2.3e-30 135.6 90 73.3
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 2.3e-30 135.6 90 72.2
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 2.3e-30 135.6 90 73.3
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 3.0e-30 135.2 91 73.6
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 3.0e-30 135.2 90 73.3
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 3.0e-30 135.2 91 72.5
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 3.0e-30 135.2 107 63.6
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 4.0e-30 134.8 91 70.3
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 4.0e-30 134.8 90 72.2
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 4.0e-30 134.8 90 72.2
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 5.2e-30 134.4 90 71.1
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 5.2e-30 134.4 91 71.4
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 5.2e-30 134.4 90 73.3
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 5.2e-30 134.4 90 72.2
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 6.8e-30 134.0 91 70.3
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 6.8e-30 134.0 90 73.3
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 6.8e-30 134.0 90 71.1
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 6.8e-30 134.0 90 73.3
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 8.8e-30 133.7 90 72.2
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 8.8e-30 133.7 90 72.2
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 8.8e-30 133.7 90 72.2
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 8.8e-30 133.7 90 72.2
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 1.2e-29 133.3 89 71.9
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 1.2e-29 133.3 90 71.1
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.2e-29 133.3 90 68.9
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 1.5e-29 132.9 90 70.0
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 1.5e-29 132.9 89 73.0
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 1.5e-29 132.9 90 72.2
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 2.0e-29 132.5 90 71.1
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 2.0e-29 132.5 90 70.0
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 2.6e-29 132.1 90 68.9
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 2.6e-29 132.1 90 70.0
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 3.4e-29 131.7 90 72.2
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 3.4e-29 131.7 89 71.9
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 3.4e-29 131.7 90 68.9
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 3.4e-29 131.7 90 73.3
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 3.4e-29 131.7 90 70.0
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 3.4e-29 131.7 90 71.1
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 3.4e-29 131.7 90 67.8
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 4.4e-29 131.3 90 70.0
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 4.4e-29 131.3 90 70.0
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 5.7e-29 131.0 90 70.0
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 5.7e-29 131.0 90 70.0
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 7.5e-29 130.6 90 70.0
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 9.8e-29 130.2 90 70.0
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 9.8e-29 130.2 90 70.0
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 1.3e-28 129.8 90 68.9
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 1.7e-28 129.4 90 70.0
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.7e-28 129.4 90 70.0
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.7e-28 129.4 90 70.0
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 1.7e-28 129.4 90 70.0
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 1.7e-28 129.4 91 68.1
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 2.2e-28 129.0 90 67.8
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 2.2e-28 129.0 90 70.0
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 2.8e-28 128.6 90 67.8
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 3.7e-28 128.3 90 67.8
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 4.8e-28 127.9 90 70.0
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 4.8e-28 127.9 90 67.8
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 8.3e-28 127.1 90 65.6
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 1.1e-27 126.7 90 66.7
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 1.1e-27 126.7 90 71.1
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 1.4e-27 126.3 90 68.9
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 3.1e-27 125.2 91 65.9
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 3.1e-27 125.2 90 66.7
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 4.1e-27 124.8 90 68.9
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 5.4e-27 124.4 91 64.8
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 7.0e-27 124.0 90 66.7
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 1.2e-26 123.2 87 69.0
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 1.2e-26 123.2 113 58.4
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 2.0e-26 122.5 90 66.7
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 2.0e-26 122.5 90 66.7
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 2.0e-26 122.5 90 62.2
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 2.7e-26 122.1 90 61.1
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 2.7e-26 122.1 91 65.9
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 4.5e-26 121.3 91 62.6
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 4.5e-26 121.3 91 64.8
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 1.3e-25 119.8 91 61.5
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 1.7e-25 119.4 91 62.6
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 5.0e-25 117.9 90 63.3
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 2.8e-23 112.1 82 63.4
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 2.8e-23 112.1 91 64.8
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 6.1e-23 110.9 90 60.0
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 1.4e-22 109.8 90 58.9
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 4.9e-20 101.3 90 60.0
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 1.2e-18 96.7 91 50.5
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 2.7e-18 95.5 90 51.1
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 5.9e-18 94.4 103 51.5
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 2.3e-17 92.4 113 44.2
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 3.8e-17 91.7 56 76.8
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 5.0e-17 91.3 88 50.0
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 5.6e-16 87.8 62 67.7
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 8.0e-15 84.0 89 56.2
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 2.0e-10 69.3 90 44.4
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 4.6e-10 68.2 54 55.6
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-07 60.1 62 46.8


User provided reference genes

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