Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 8.0e-233 810.1 414 100.0
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 4.6e-180 634.8 405 78.8
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 1.8e-179 632.9 406 78.8
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 6.7e-179 630.9 389 82.0
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 6.7e-179 630.9 394 80.5
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 3.3e-178 628.6 406 78.3
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 5.7e-178 627.9 406 78.6
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 9.7e-178 627.1 401 79.6
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 9.7e-178 627.1 401 78.6
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 1.3e-177 626.7 396 79.5
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 2.2e-177 625.9 402 78.6
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 2.8e-177 625.5 394 80.2
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 6.3e-177 624.4 392 79.3
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 1.1e-176 623.6 405 77.8
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 1.4e-176 623.2 396 78.8
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 1.4e-176 623.2 394 80.5
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 1.8e-176 622.9 413 76.8
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 1.8e-176 622.9 397 79.1
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 4.1e-176 621.7 394 78.9
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 2.0e-175 619.4 395 78.0
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 4.5e-175 618.2 394 78.9
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 5.9e-175 617.8 404 77.5
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 1.3e-174 616.7 394 79.2
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 1.1e-173 613.6 387 79.1
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 2.5e-173 612.5 409 76.8
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 3.2e-173 612.1 408 75.5
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 9.4e-173 610.5 406 76.4
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 2.1e-172 609.4 397 78.1
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 3.6e-172 608.6 386 78.8
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 3.6e-172 608.6 394 77.7
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 3.6e-172 608.6 407 76.2
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 6.7e-171 604.4 405 76.8
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 8.8e-171 604.0 393 77.6
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 8.8e-171 604.0 393 77.6
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 1.5e-170 603.2 401 76.8
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 2.8e-169 599.0 393 76.8
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 4.8e-169 598.2 395 77.7
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 1.1e-168 597.0 403 75.2
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 1.8e-168 596.3 427 73.3
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 3.1e-168 595.5 409 74.8
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 4.1e-168 595.1 437 71.4
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 6.9e-168 594.3 409 77.0
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 1.2e-167 593.6 387 77.8
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 2.0e-167 592.8 431 72.2
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 2.6e-167 592.4 409 73.6
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 3.4e-167 592.0 410 73.9
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 1.0e-166 590.5 393 75.8
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 1.1e-165 587.0 408 73.5
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 1.1e-165 587.0 448 69.2
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 1.4e-165 586.6 393 75.3
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 2.5e-165 585.9 393 75.6
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 3.2e-165 585.5 393 75.8
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 2.1e-164 582.8 372 78.2
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 2.7e-164 582.4 398 75.6
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 4.7e-164 581.6 429 70.6
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 7.9e-164 580.9 379 78.9
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 1.0e-163 580.5 386 75.1
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 2.3e-163 579.3 408 73.5
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.5e-162 576.6 377 78.5
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 3.3e-162 575.5 416 71.6
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 5.7e-162 574.7 421 70.5
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 9.7e-162 573.9 354 82.2
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 1.0e-158 563.9 421 70.5
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 2.5e-157 559.3 381 75.9
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 1.6e-156 556.6 401 72.3
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 2.7e-156 555.8 533 58.3
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 5.2e-155 551.6 365 76.4
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 2.0e-154 549.7 406 71.9
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 2.4e-152 542.7 399 70.4
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 3.5e-151 538.9 394 73.1
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 1.0e-150 537.3 412 68.0
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 2.2e-150 536.2 347 80.1
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 1.4e-147 526.9 409 68.5
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 5.2e-147 525.0 436 65.1
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 6.3e-145 518.1 393 69.7
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 1.8e-144 516.5 399 67.9
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 1.2e-143 513.8 408 68.9
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 2.2e-142 509.6 399 68.4
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 2.2e-142 509.6 382 66.8
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 1.1e-141 507.3 404 66.8
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.2e-140 503.8 386 69.2
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 8.0e-140 501.1 391 69.3
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 1.1e-136 490.7 407 65.1
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 1.4e-136 490.3 397 64.7
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 5.9e-135 485.0 407 66.1
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 1.7e-134 483.4 394 67.0
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 3.6e-132 475.7 394 65.7
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 6.8e-131 471.5 358 70.1
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 6.8e-131 471.5 301 79.7
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 1.4e-120 437.2 303 74.6
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 3.3e-117 426.0 344 66.3
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 2.0e-114 416.8 401 55.1
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 2.1e-111 406.8 256 81.2
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 1.2e-106 391.0 398 54.0
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 1.1e-104 384.4 477 48.2
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 9.2e-104 381.3 257 77.0
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 2.8e-100 369.8 273 71.1
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 7.4e-85 318.5 201 81.1
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 4.2e-80 302.8 203 71.9
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.3e-78 297.7 206 78.2
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.5e-77 294.3 188 81.4
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 1.1e-72 278.1 530 37.5
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 7.1e-72 275.4 201 75.1
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 4.6e-71 272.7 185 71.9
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 6.0e-71 272.3 185 70.8
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.5e-69 267.7 172 79.1
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 2.9e-65 253.4 186 67.7
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 1.6e-63 247.7 155 79.4
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 3.6e-63 246.5 329 48.0
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 4.6e-63 246.1 142 84.5
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 6.1e-63 245.7 152 81.6
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 8.7e-62 241.9 159 77.4
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 8.2e-60 235.3 137 82.5
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 1.7e-57 227.6 208 62.0
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 1.7e-57 227.6 208 62.0
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 1.7e-57 227.6 208 62.0
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.6e-55 221.1 136 80.9
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 1.8e-54 217.6 210 61.9
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 6.5e-49 199.1 162 61.1
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 7.0e-43 179.1 112 80.4
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 7.7e-42 175.6 129 69.0
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.7e-41 174.5 97 88.7
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 2.0e-37 161.0 121 66.1
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 1.4e-35 154.8 84 90.5
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 4.1e-35 153.3 125 65.6
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 3.4e-29 133.7 74 87.8
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 2.8e-28 130.6 82 80.5
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 1.1e-27 128.6 82 79.3
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 9.1e-27 125.6 144 50.7
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 3.5e-26 123.6 124 55.6
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 4.5e-26 123.2 74 75.7
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 3.1e-19 100.5 86 60.5
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 9.2e-19 99.0 62 75.8
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 2.7e-18 97.4 167 38.3
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 5.9e-18 96.3 180 39.4
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 1.1e-11 75.5 57 68.4
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 2.4e-11 74.3 73 52.1
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 3.6e-07 60.5 132 34.8
RcHm_v2.0_Chr5g0010491 Rosa chinensis HOM05D005057 ORTHO05D006570 1.4e-06 58.5 76 50.0


User provided reference genes

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