Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0007990 Simmondsia chinensis HOM05D008057 ORTHO05D003476 4.3e-85 318.9 315 100.0
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 8.0e-15 85.5 89 53.9
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 1.8e-14 84.3 72 59.7
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 8.8e-14 82.0 50 78.0
Oeu050291.1 Olea europaea HOM05D008057 ORTHO05D003476 3.3e-13 80.1 48 75.0
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 7.5e-13 79.0 51 70.6
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 1.3e-12 78.2 51 74.5
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 2.8e-12 77.0 47 74.5
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 3.7e-12 76.6 51 66.7
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 3.7e-12 76.6 51 66.7
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 3.7e-12 76.6 116 41.4
Lsat_1_v5_gn_8_540 Lactuca sativa HOM05D008057 ORTHO05D003476 3.7e-12 76.6 92 45.7
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 3.7e-12 76.6 66 53.0
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 6.3e-12 75.9 107 40.2
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 6.3e-12 75.9 117 39.3
RcHm_v2.0_Chr7g0218101 Rosa chinensis HOM05D015681 ORTHO05D003476 6.3e-12 75.9 90 48.9
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 8.2e-12 75.5 51 64.7
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 8.2e-12 75.5 47 72.3
Eucgr.K02337 Eucalyptus grandis HOM05D008057 ORTHO05D003476 1.1e-11 75.1 148 37.8
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 1.1e-11 75.1 52 67.3
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 1.1e-11 75.1 52 61.5
DCAR_014755 Daucus carota HOM05D008057 ORTHO05D003476 1.4e-11 74.7 66 51.5
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 1.4e-11 74.7 90 45.6
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 1.4e-11 74.7 102 45.1
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 1.4e-11 74.7 52 65.4
AUR62033080 Chenopodium quinoa HOM05D008057 ORTHO05D003476 1.8e-11 74.3 140 36.4
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 1.8e-11 74.3 66 57.6
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 2.4e-11 73.9 51 68.6
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 3.1e-11 73.6 51 66.7
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 4.1e-11 73.2 99 43.4
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 5.3e-11 72.8 137 36.5
VMungo0464G0225 Vigna mungo HOM05D008057 ORTHO05D003476 7.0e-11 72.4 51 62.7
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 1.2e-10 71.6 77 45.5
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 1.2e-10 71.6 48 64.6
FAN08G2522 Fragaria x ananassa HOM05D015681 ORTHO05D003476 1.2e-10 71.6 48 68.8
MD10G1047400 Malus domestica HOM05D015681 ORTHO05D003476 1.2e-10 71.6 48 62.5
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 1.2e-10 71.6 143 35.0
arahy.Tifrunner.gnm1.ann1.1W7ASM Arachis hypogaea HOM05D008057 ORTHO05D003476 1.6e-10 71.2 61 55.7
arahy.Tifrunner.gnm1.ann1.RQNS35 Arachis hypogaea HOM05D008057 ORTHO05D003476 1.6e-10 71.2 61 55.7
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 1.6e-10 71.2 51 60.8
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 2.7e-10 70.5 125 35.2
HanXRQChr08g0226101 Helianthus annuus HOM05D008057 ORTHO05D003476 4.5e-10 69.7 60 58.3
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 4.5e-10 69.7 47 66.0
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 5.9e-10 69.3 62 56.5
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 5.9e-10 69.3 51 60.8
TWI81G0899 Tripterygium wilfordii HOM05D008057 ORTHO05D003476 5.9e-10 69.3 51 58.8
Ah.09g232210 Amaranthus hybridus HOM05D002613 ORTHO05D003140 7.7e-10 68.9 48 60.4
Prupe.8G056400 Prunus persica HOM05D015681 ORTHO05D003476 7.7e-10 68.9 48 62.5
Sed0002498 Sechium edule HOM05D008057 ORTHO05D003476 7.7e-10 68.9 51 58.8
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 1.0e-09 68.6 51 54.9
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 1.3e-09 68.2 70 50.0
AUR62042766 Chenopodium quinoa HOM05D008057 ORTHO05D003476 1.3e-09 68.2 137 35.0
Phvul.004G136200 Phaseolus vulgaris HOM05D008057 ORTHO05D003476 1.7e-09 67.8 70 50.0
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 2.2e-09 67.4 46 67.4
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 2.2e-09 67.4 108 38.9
PSO782G0732 Papaver somniferum HOM05D045975 ORTHO05D003476 2.2e-09 67.4 103 35.9
Solyc03g019840.4 Solanum lycopersicum HOM05D008057 ORTHO05D003476 2.2e-09 67.4 96 38.5
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 2.2e-09 67.4 103 35.9
Aqoxy3G04343 Aquilegia oxysepala HOM05D008057 ORTHO05D003476 3.8e-09 66.6 46 60.9
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 3.8e-09 66.6 52 61.5
PSO063G6649 Papaver somniferum HOM05D045975 ORTHO05D003476 3.8e-09 66.6 86 38.4
EL10Ac9g22929 Beta vulgaris HOM05D008057 ORTHO05D003476 6.5e-09 65.9 44 63.6
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 6.5e-09 65.9 48 62.5
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 6.5e-09 65.9 69 50.7
FvH4_5g27110 Fragaria vesca HOM05D015681 ORTHO05D003476 6.5e-09 65.9 136 37.5
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 8.5e-09 65.5 90 34.4
Sopen03g029780 Solanum pennellii HOM05D008057 ORTHO05D003476 8.5e-09 65.5 143 32.2
vmacro12841 Vaccinium macrocarpon HOM05D008057 ORTHO05D003476 8.5e-09 65.5 50 64.0
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 1.1e-08 65.1 124 37.9
Ca_25286_v3 Cicer arietinum L. HOM05D008057 ORTHO05D003476 1.5e-08 64.7 43 67.4
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 2.5e-08 63.9 52 59.6
Hund06726 Selenicereus undatus HOM05D008057 ORTHO05D003476 2.5e-08 63.9 133 36.8
SGA_v2.0_scaffold28G11776 Striga asiatica HOM05D008057 ORTHO05D003476 2.5e-08 63.9 52 55.8
HPP92_025600 Vanilla planifolia HOM05D061565 ORTHO05D003476 2.5e-08 63.9 66 51.5
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 3.2e-08 63.5 45 64.4
Haze_18401 Corylus avellana HOM05D008057 ORTHO05D003476 3.2e-08 63.5 39 71.8
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 4.2e-08 63.2 50 54.0
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 7.2e-08 62.4 52 59.6
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 7.2e-08 62.4 52 59.6
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 7.2e-08 62.4 52 59.6
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 7.2e-08 62.4 52 59.6
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 7.2e-08 62.4 52 59.6
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 9.4e-08 62.0 122 29.5
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 9.4e-08 62.0 51 52.9
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 1.6e-07 61.2 48 58.3
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 1.6e-07 61.2 47 53.2
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 2.1e-07 60.8 41 63.4
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 2.7e-07 60.5 48 56.2
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 3.6e-07 60.1 48 60.4
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 6.1e-07 59.3 46 58.7
FAN13G2350 Fragaria x ananassa HOM05D015681 ORTHO05D003476 6.1e-07 59.3 47 61.7
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 6.1e-07 59.3 47 53.2
Zm00001eb248340 Zea mays HOM05D046263 ORTHO05D003476 1.0e-06 58.5 44 54.5
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 1.4e-06 58.2 87 31.0
FAN18G3766 Fragaria x ananassa HOM05D015681 ORTHO05D003476 1.8e-06 57.8 135 34.8
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 1.8e-06 57.8 58 44.8
BcaB01g04480 Brassica carinata HOM05D012436 ORTHO05D003476 2.3e-06 57.4 42 61.9
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 2.3e-06 57.4 155 29.7
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 2.3e-06 57.4 47 48.9
FAN04G2538 Fragaria x ananassa HOM05D015681 ORTHO05D003476 3.0e-06 57.0 47 55.3
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 3.0e-06 57.0 71 38.0
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 3.0e-06 57.0 156 27.6
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 4.0e-06 56.6 41 61.0
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 4.0e-06 56.6 71 38.0
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 4.0e-06 56.6 71 35.2
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 5.2e-06 56.2 143 28.7
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 5.2e-06 56.2 58 41.4
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 6.8e-06 55.8 131 28.2
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 6.8e-06 55.8 96 30.2
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 8.8e-06 55.5 135 26.7


User provided reference genes

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