Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 3.5e-39 164.5 82 100.0
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 7.6e-26 120.2 84 69.0
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 1.7e-25 119.0 80 66.2
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 1.1e-24 116.3 80 68.8
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 2.4e-24 115.2 80 66.2
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 7.1e-24 113.6 80 66.2
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 7.1e-24 113.6 82 64.6
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 7.1e-24 113.6 80 65.0
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 1.2e-23 112.8 80 65.0
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 1.2e-23 112.8 83 62.7
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 1.6e-23 112.5 81 65.4
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 2.1e-23 112.1 80 65.0
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 4.6e-23 110.9 79 63.3
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 4.6e-23 110.9 80 58.8
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 4.6e-23 110.9 78 65.4
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 4.6e-23 110.9 78 65.4
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 6.0e-23 110.5 80 62.5
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 7.9e-23 110.2 79 63.3
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 2.3e-22 108.6 80 62.5
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 3.9e-22 107.8 80 60.0
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 6.7e-22 107.1 80 62.5
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 8.7e-22 106.7 79 65.8
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 1.5e-21 105.9 85 61.2
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 1.9e-21 105.5 80 57.5
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 2.5e-21 105.1 65 72.3
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 2.5e-21 105.1 80 62.5
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 2.5e-21 105.1 81 60.5
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 4.3e-21 104.4 80 55.0
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 9.6e-21 103.2 70 64.3
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 9.6e-21 103.2 85 57.6
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 1.3e-20 102.8 80 61.2
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 1.3e-20 102.8 80 61.2
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 1.3e-20 102.8 79 60.8
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 2.1e-20 102.1 62 67.7
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 2.1e-20 102.1 77 64.9
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 2.8e-20 101.7 80 60.0
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 3.7e-20 101.3 68 67.6
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 3.7e-20 101.3 63 68.3
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 4.8e-20 100.9 86 57.0
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 4.8e-20 100.9 70 62.9
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 4.8e-20 100.9 77 63.6
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 4.8e-20 100.9 63 66.7
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 4.8e-20 100.9 74 60.8
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 6.2e-20 100.5 78 59.0
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 6.2e-20 100.5 75 60.0
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 6.2e-20 100.5 64 65.6
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 8.1e-20 100.1 80 61.2
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 1.1e-19 99.8 79 58.2
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 1.1e-19 99.8 80 60.0
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 1.1e-19 99.8 80 60.0
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 1.4e-19 99.4 80 55.0
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 1.4e-19 99.4 87 59.8
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 2.4e-19 98.6 91 54.9
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 2.4e-19 98.6 78 56.4
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 2.4e-19 98.6 80 61.2
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 3.1e-19 98.2 67 61.2
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 4.0e-19 97.8 78 60.3
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 5.3e-19 97.4 85 56.5
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 6.9e-19 97.1 64 67.2
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 6.9e-19 97.1 63 65.1
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 6.9e-19 97.1 63 63.5
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 9.0e-19 96.7 70 61.4
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 9.0e-19 96.7 85 54.1
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 2.0e-18 95.5 78 57.7
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 3.4e-18 94.7 68 57.4
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 5.8e-18 94.0 80 52.5
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 7.6e-18 93.6 74 58.1
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 7.6e-18 93.6 95 51.6
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 4.9e-17 90.9 77 54.5
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.1e-16 89.7 63 60.3
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 2.5e-16 88.6 62 61.3
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 2.5e-16 88.6 62 61.3
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 2.5e-16 88.6 80 57.5
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 3.2e-16 88.2 63 58.7
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 7.1e-16 87.0 64 56.2
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 9.3e-16 86.7 70 58.6
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 1.2e-15 86.3 117 41.0
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 1.6e-15 85.9 61 60.7
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 1.6e-15 85.9 61 60.7
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 3.5e-15 84.7 62 59.7
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 4.6e-15 84.3 60 61.7
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 4.6e-15 84.3 60 58.3
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 7.9e-15 83.6 70 55.7
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 2.3e-14 82.0 62 56.5
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 6.7e-14 80.5 83 47.0
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 8.7e-14 80.1 63 52.4
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 8.7e-14 80.1 63 58.7
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 8.7e-14 80.1 63 58.7
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 8.7e-14 80.1 63 58.7
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 8.7e-14 80.1 61 57.4
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.5e-13 79.3 65 52.3
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 1.9e-13 79.0 57 64.9
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 2.5e-13 78.6 64 54.7
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 5.7e-13 77.4 62 53.2
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 5.7e-13 77.4 61 59.0
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 7.4e-13 77.0 81 50.6
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 7.4e-13 77.0 57 59.6
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 9.6e-13 76.6 63 54.0
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 1.3e-12 76.3 82 48.8
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.6e-12 75.9 70 48.6
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.6e-12 75.9 73 46.6
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 2.1e-12 75.5 69 49.3
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.1e-12 75.5 73 45.2
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 2.1e-12 75.5 59 57.6
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 3.7e-12 74.7 76 42.1
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 4.8e-12 74.3 74 43.2
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 8.2e-12 73.6 63 57.1
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 1.4e-11 72.8 58 56.9
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 2.4e-11 72.0 80 48.8
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 1.2e-10 69.7 46 58.7
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 1.5e-10 69.3 54 57.4
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 2.0e-10 68.9 64 51.6
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 2.0e-10 68.9 66 48.5
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 3.4e-10 68.2 70 47.1
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 5.8e-10 67.4 57 56.1
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 7.6e-10 67.0 60 46.7
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 1.7e-09 65.9 47 53.2
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 2.2e-09 65.5 39 64.1
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 2.9e-09 65.1 55 50.9
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 1.1e-08 63.2 56 48.2
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 4.2e-08 61.2 52 46.2
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 9.3e-08 60.1 49 46.9
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 1.2e-07 59.7 44 52.3
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 1.2e-07 59.7 58 39.7
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 7.9e-07 57.0 58 53.4
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 3.9e-06 54.7 101 37.6
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 5.1e-06 54.3 38 52.6
Potri.004G051201 Populus trichocarpa HOM05D006125 ORTHO05D007404 6.7e-06 53.9 55 45.5


User provided reference genes

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