Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0007710 Simmondsia chinensis HOM05D000029 ORTHO05D002586 1.1e-36 156.0 75 100.0
COL.COLO4_22867 Corchorus olitorius HOM05D001909 ORTHO05D007079 9.7e-20 99.8 69 69.6
Potri.008G009300 Populus trichocarpa HOM05D000029 ORTHO05D002586 1.3e-19 99.4 74 60.8
Cfa021397 Carpinus fangiana HOM05D000029 ORTHO05D002586 3.7e-19 97.8 69 63.8
Haze_18878 Corylus avellana HOM05D000029 ORTHO05D002586 1.8e-18 95.5 69 63.8
Duzib235G1298 Durio zibethinus HOM05D000029 ORTHO05D002586 5.3e-18 94.0 69 63.8
Cc04_g00430 Coffea canephora HOM05D000029 ORTHO05D002586 1.6e-17 92.4 68 63.2
Aqoxy6G02372 Aquilegia oxysepala HOM05D000029 ORTHO05D002586 2.0e-17 92.0 69 66.7
Nn8g40364 Nelumbo nucifera HOM05D000029 ORTHO05D002586 2.0e-17 92.0 69 63.8
Lalb_Chr24g0393671 Lupinus albus HOM05D000029 ORTHO05D002586 3.5e-17 91.3 68 57.4
Manes.04G099300 Manihot esculenta HOM05D000029 ORTHO05D002586 1.3e-16 89.4 69 62.3
Hund21922 Selenicereus undatus HOM05D000029 ORTHO05D002586 1.7e-16 89.0 73 57.5
Rhsim08G0247000 Rhododendron simsii HOM05D000029 ORTHO05D002586 2.2e-16 88.6 72 59.7
Aqoxy6G02042 Aquilegia oxysepala HOM05D000029 ORTHO05D002586 2.9e-16 88.2 68 61.8
CiPaw.16G093800 Carya illinoinensis HOM05D000029 ORTHO05D002586 2.9e-16 88.2 73 57.5
TWI39G1249 Tripterygium wilfordii HOM05D000029 ORTHO05D002586 2.9e-16 88.2 73 58.9
TAR559G0001 Trochodendron aralioides HOM05D000029 ORTHO05D002586 3.8e-16 87.8 69 62.3
TAR625G0481 Trochodendron aralioides HOM05D000029 ORTHO05D002586 3.8e-16 87.8 69 62.3
Sabra08G0005300 Salix brachista HOM05D000029 ORTHO05D002586 6.5e-16 87.0 67 59.7
MSTRG.22507 Avicennia marina HOM05D000029 ORTHO05D002586 8.5e-16 86.7 71 57.7
Dinv37802 Davidia involucrata HOM05D000029 ORTHO05D002586 8.5e-16 86.7 70 60.0
Ah.14g085770 Amaranthus hybridus HOM05D000029 ORTHO05D002586 1.1e-15 86.3 73 60.3
Medtr2g105680 Medicago truncatula HOM05D000029 ORTHO05D002586 1.1e-15 86.3 68 58.8
PSO063G2705 Papaver somniferum HOM05D000029 ORTHO05D002586 1.1e-15 86.3 70 58.6
Psat5g046760 Pisum sativum HOM05D000029 ORTHO05D002586 1.5e-15 85.9 71 56.3
Gohir.A10G007600 Gossypium hirsutum HOM05D000029 ORTHO05D002586 1.9e-15 85.5 69 58.0
PSO724G0700 Papaver somniferum HOM05D000029 ORTHO05D002586 1.9e-15 85.5 61 65.6
TWI23G0691 Tripterygium wilfordii HOM05D000029 ORTHO05D002586 3.2e-15 84.7 74 55.4
Hund21923 Selenicereus undatus HOM05D000029 ORTHO05D002586 7.2e-15 83.6 72 58.3
Hund21921 Selenicereus undatus HOM05D000029 ORTHO05D002586 1.2e-14 82.8 73 56.2
Gohir.D10G007500 Gossypium hirsutum HOM05D000029 ORTHO05D002586 2.1e-14 82.0 62 59.7
Manes.04G099100 Manihot esculenta HOM05D000029 ORTHO05D002586 2.1e-14 82.0 71 59.2
Gorai.011G008200 Gossypium raimondii HOM05D000029 ORTHO05D002586 2.7e-14 81.6 62 59.7
RcHm_v2.0_Chr2g0150241 Rosa chinensis HOM05D000029 ORTHO05D002586 2.7e-14 81.6 74 56.8
FvH4_6g37430 Fragaria vesca HOM05D000029 ORTHO05D002586 3.6e-14 81.3 74 56.8
FAN02G3136 Fragaria x ananassa HOM05D000029 ORTHO05D002586 3.6e-14 81.3 74 56.8
FAN05G1949 Fragaria x ananassa HOM05D000029 ORTHO05D002586 3.6e-14 81.3 74 56.8
TPR.G31787 Trifolium pratense HOM05D000029 ORTHO05D002586 3.6e-14 81.3 68 55.9
TAR625G0533 Trochodendron aralioides HOM05D000029 ORTHO05D002586 3.6e-14 81.3 68 61.8
vmacro18700 Vaccinium macrocarpon HOM05D000029 ORTHO05D002586 3.6e-14 81.3 72 56.9
FAN02G2390 Fragaria x ananassa HOM05D000029 ORTHO05D002586 4.7e-14 80.9 74 56.8
FAN05G3853 Fragaria x ananassa HOM05D000029 ORTHO05D002586 4.7e-14 80.9 74 55.4
Lj3g0017714 Lotus japonicus HOM05D000029 ORTHO05D002586 6.1e-14 80.5 68 54.4
TWI12G0471 Tripterygium wilfordii HOM05D000029 ORTHO05D002586 6.1e-14 80.5 67 58.2
Ca_00985_v3 Cicer arietinum L. HOM05D000029 ORTHO05D002586 8.0e-14 80.1 68 54.4
Ca_00999_v3 Cicer arietinum L. HOM05D000029 ORTHO05D002586 8.0e-14 80.1 68 54.4
Migut.I01152 Erythranthe guttata HOM05D000029 ORTHO05D002586 8.0e-14 80.1 69 55.1
FAN14G3707 Fragaria x ananassa HOM05D000029 ORTHO05D002586 8.0e-14 80.1 74 56.8
MBI16_g00669_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D002586 8.0e-14 80.1 63 60.3
QL10p030477 Quercus lobata HOM05D000029 ORTHO05D002586 8.0e-14 80.1 69 55.1
FAN09G2714 Fragaria x ananassa HOM05D000029 ORTHO05D002586 1.0e-13 79.7 74 55.4
ATR0580G151 Amborella trichopoda HOM05D000029 ORTHO05D002586 1.4e-13 79.3 70 52.9
arahy.Tifrunner.gnm1.ann1.1L0XSC Arachis hypogaea HOM05D000029 ORTHO05D002586 1.4e-13 79.3 71 50.7
EL10Ac4g10016 Beta vulgaris HOM05D000029 ORTHO05D002586 1.4e-13 79.3 69 58.0
DCAR_026433 Daucus carota HOM05D001342 ORTHO05D002586 1.4e-13 79.3 72 54.2
FAN09G1043 Fragaria x ananassa HOM05D000029 ORTHO05D002586 1.8e-13 79.0 73 54.8
Lj5C25T13 Lonicera japonica HOM05D000029 ORTHO05D002586 1.8e-13 79.0 69 56.5
PSO017G5321 Papaver somniferum HOM05D000029 ORTHO05D002586 1.8e-13 79.0 69 53.6
Peaxi162Scf00038g02434 Petunia axillaris HOM05D000029 ORTHO05D002586 1.8e-13 79.0 73 53.4
Manes.16G045200 Manihot esculenta HOM05D000029 ORTHO05D002586 2.3e-13 78.6 63 58.7
SalBow6G1033 Salvia bowleyana HOM05D000029 ORTHO05D002586 2.3e-13 78.6 69 58.0
Nitab4.5_0002885g0070 Nicotiana tabacum HOM05D000029 ORTHO05D002586 5.2e-13 77.4 73 54.8
arahy.Tifrunner.gnm1.ann1.DUEZ3B Arachis hypogaea HOM05D000029 ORTHO05D002586 6.8e-13 77.0 71 50.7
Ca_06142_v3 Cicer arietinum L. HOM05D000029 ORTHO05D002586 8.8e-13 76.6 71 56.3
Nn2g12617 Nelumbo nucifera HOM05D000029 ORTHO05D002586 8.8e-13 76.6 69 58.0
VMungo1127G0087 Vigna mungo HOM05D000029 ORTHO05D002586 8.8e-13 76.6 66 54.5
Prupe.3G167800 Prunus persica HOM05D000029 ORTHO05D002586 1.5e-12 75.9 69 56.5
HPP92_010756 Vanilla planifolia HOM05D000029 ORTHO05D002586 1.5e-12 75.9 60 58.3
HPP92_010757 Vanilla planifolia HOM05D000029 ORTHO05D002586 1.5e-12 75.9 60 58.3
Eucgr.F04005 Eucalyptus grandis HOM05D000029 ORTHO05D002586 2.6e-12 75.1 69 58.0
Psat5g299600 Pisum sativum HOM05D000029 ORTHO05D002586 2.6e-12 75.1 69 52.2
Eucgr.F04007 Eucalyptus grandis HOM05D000029 ORTHO05D002586 3.4e-12 74.7 69 56.5
Zm00001eb040920 Zea mays HOM05D000029 ORTHO05D002586 4.4e-12 74.3 66 54.5
Ciclev10024756m.g Citrus clementina HOM05D000029 ORTHO05D002586 5.7e-12 73.9 57 59.6
Phvul.005G184700 Phaseolus vulgaris HOM05D000029 ORTHO05D002586 5.7e-12 73.9 68 52.9
arahy.Tifrunner.gnm1.ann1.UUXJ7Q Arachis hypogaea HOM05D000029 ORTHO05D002586 9.7e-12 73.2 65 49.2
TPR.G31191 Trifolium pratense HOM05D000029 ORTHO05D002586 1.3e-11 72.8 69 53.6
Medtr5g087340 Medicago truncatula HOM05D000029 ORTHO05D002586 1.7e-11 72.4 71 52.1
Medtr5g087360 Medicago truncatula HOM05D000029 ORTHO05D002586 1.7e-11 72.4 71 52.1
Phvul.011G166400 Phaseolus vulgaris HOM05D000029 ORTHO05D002586 2.2e-11 72.0 66 51.5
TPR.G29911 Trifolium pratense HOM05D000029 ORTHO05D002586 2.8e-11 71.6 71 53.5
Glyma.15G001500 Glycine max HOM05D000029 ORTHO05D002586 3.7e-11 71.2 71 52.1
Potri.008G007600 Populus trichocarpa HOM05D000029 ORTHO05D002586 3.7e-11 71.2 66 54.5
GSVIVG01016126001 Vitis vinifera HOM05D000029 ORTHO05D002586 3.7e-11 71.2 61 54.1
MD17G1144300 Malus domestica HOM05D000029 ORTHO05D002586 4.8e-11 70.9 69 52.2
Sed0005839 Sechium edule HOM05D000029 ORTHO05D002586 6.3e-11 70.5 70 51.4
Medtr5g087370 Medicago truncatula HOM05D000029 ORTHO05D002586 8.3e-11 70.1 57 57.9
Thecc.06G016200 Theobroma cacao HOM05D000029 ORTHO05D002586 1.1e-10 69.7 66 53.0
Medtr1g090520 Medicago truncatula HOM05D000029 ORTHO05D002586 1.4e-10 69.3 58 56.9
Aqoxy7G03163 Aquilegia oxysepala HOM05D000109 ORTHO05D002586 1.8e-10 68.9 69 52.2
Os08g0446200 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D002586 1.8e-10 68.9 64 51.6
SGA_v2.0_scaffold71G24014 Striga asiatica HOM05D000029 ORTHO05D002586 1.8e-10 68.9 68 48.5
Ah.04g159190 Amaranthus hybridus HOM05D000029 ORTHO05D002586 2.4e-10 68.6 59 54.2
AUR62006627 Chenopodium quinoa HOM05D000029 ORTHO05D002586 3.1e-10 68.2 58 58.6
TPR.G1170 Trifolium pratense HOM05D000029 ORTHO05D002586 4.1e-10 67.8 61 57.4
AUR62033037 Chenopodium quinoa HOM05D000029 ORTHO05D002586 7.0e-10 67.0 73 50.7
CAN.G790.29 Capsicum annuum HOM05D000029 ORTHO05D002586 1.2e-09 66.2 60 51.7
PSO478G5170 Papaver somniferum HOM05D000029 ORTHO05D002586 2.0e-09 65.5 69 46.4
THA.LOC104823328 Tarenaya hassleriana HOM05D000029 ORTHO05D002586 2.7e-09 65.1 74 47.3
ClCG07G014170 Citrullus lanatus HOM05D000029 ORTHO05D002586 4.5e-09 64.3 64 50.0
TPR.G24180 Trifolium pratense HOM05D000029 ORTHO05D025859 4.5e-09 64.3 60 53.3
AUR62000279 Chenopodium quinoa HOM05D000029 ORTHO05D002586 5.9e-09 63.9 57 54.4
TPR.G3503 Trifolium pratense HOM05D000029 ORTHO05D002586 7.7e-09 63.5 68 45.6
Glyma.20G194400 Glycine max HOM05D000029 ORTHO05D002586 1.0e-08 63.2 57 56.1
Phvul.007G137800 Phaseolus vulgaris HOM05D000029 ORTHO05D002586 1.0e-08 63.2 58 55.2
arahy.Tifrunner.gnm1.ann1.UC5N5L Arachis hypogaea HOM05D000029 ORTHO05D002586 1.3e-08 62.8 66 50.0
MELO3C025794.2 Cucumis melo HOM05D000029 ORTHO05D002586 1.3e-08 62.8 69 47.8
arahy.Tifrunner.gnm1.ann1.QB387P Arachis hypogaea HOM05D000029 ORTHO05D002586 1.7e-08 62.4 54 51.9
Lalb_Chr02g0150951 Lupinus albus HOM05D000029 ORTHO05D002586 1.7e-08 62.4 57 56.1
Atru.chr1.2777 Acer truncatum HOM05D000029 ORTHO05D002586 2.9e-08 61.6 62 51.6
Glyma.10G195700 Glycine max HOM05D000029 ORTHO05D002586 2.9e-08 61.6 57 54.4
TPR.G29903 Trifolium pratense HOM05D000029 ORTHO05D002586 2.9e-08 61.6 57 54.4
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 5.0e-08 60.8 65 47.7
ECA232G4700 Erigeron canadensis HOM05D000029 ORTHO05D002586 5.0e-08 60.8 59 52.5
Sc02g0006120 Simmondsia chinensis HOM05D000029 ORTHO05D002586 5.0e-08 60.8 41 68.3
arahy.Tifrunner.gnm1.ann1.6EK4ED Arachis hypogaea HOM05D000029 ORTHO05D002586 6.5e-08 60.5 65 49.2
AT1G73080 Arabidopsis thaliana HOM05D000029 ORTHO05D002586 8.5e-08 60.1 58 55.2
MELO3C025795.2 Cucumis melo HOM05D000029 ORTHO05D002586 8.5e-08 60.1 69 44.9
Actinidia21635 Actinidia chinensis HOM05D000029 ORTHO05D002586 1.1e-07 59.7 66 47.0
AL2G32830 Arabidopsis lyrata HOM05D000029 ORTHO05D002586 1.1e-07 59.7 58 53.4
Thhalv10018036m.g Eutrema salsugineum HOM05D000029 ORTHO05D002586 1.1e-07 59.7 58 51.7
VMungo0720G1393 Vigna mungo HOM05D000029 ORTHO05D002586 1.1e-07 59.7 58 53.4
VMungo1080G0163 Vigna mungo HOM05D000029 ORTHO05D002586 1.9e-07 58.9 61 47.5
Sp1g15830 Schrenkiella parvula HOM05D000029 ORTHO05D002586 3.2e-07 58.2 58 53.4
EL10Ac8g19461 Beta vulgaris HOM05D000029 ORTHO05D002586 4.2e-07 57.8 72 45.8
BraA07t30636Z Brassica rapa HOM05D000029 ORTHO05D002586 5.5e-07 57.4 58 48.3
CSS0039856 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D002586 9.4e-07 56.6 70 47.1
Prupe.3G167700 Prunus persica HOM05D000029 ORTHO05D002586 9.4e-07 56.6 63 47.6
AL1G30100 Arabidopsis lyrata HOM05D000029 ORTHO05D002586 1.6e-06 55.8 58 51.7
Medtr7g092880 Medicago truncatula HOM05D000029 ORTHO05D002586 1.6e-06 55.8 46 56.5
BcaC08g45675 Brassica carinata HOM05D000029 ORTHO05D002586 2.7e-06 55.1 58 46.6
C06p34330 Brassica napus HOM05D000029 ORTHO05D002586 2.7e-06 55.1 58 46.6
ECA247G0406 Erigeron canadensis HOM05D000029 ORTHO05D002586 2.7e-06 55.1 50 52.0
MD09G1158300 Malus domestica HOM05D000029 ORTHO05D002586 2.7e-06 55.1 69 46.4
Sed0009650 Sechium edule HOM05D000029 ORTHO05D002586 2.7e-06 55.1 75 40.0
Medtr5g087350 Medicago truncatula HOM05D000029 ORTHO05D002586 3.6e-06 54.7 41 58.5
TPR.G23757 Trifolium pratense HOM05D000029 ORTHO05D025859 3.6e-06 54.7 47 55.3
Carub.0001s1748 Capsella rubella HOM05D000029 ORTHO05D002586 4.7e-06 54.3 58 51.7
CsaV3_3G031210 Cucumis sativus L. HOM05D000029 ORTHO05D002586 8.0e-06 53.5 69 44.9
CsaV3_UNG227850 Cucumis sativus L. HOM05D000029 ORTHO05D002586 8.0e-06 53.5 69 44.9
Hma1.2p1_1104F.1_g257410 Hydrangea macrophylla HOM05D000029 ORTHO05D002586 8.0e-06 53.5 60 45.0


User provided reference genes

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