Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 1.3e-258 896.0 466 100.0
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 5.7e-78 295.8 453 43.7
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 3.7e-77 293.1 457 44.0
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.1e-76 291.6 453 43.9
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 4.3e-73 279.6 468 42.1
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 1.6e-72 277.7 453 43.0
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 4.7e-72 276.2 451 44.8
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 1.0e-71 275.0 452 43.6
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 2.0e-70 270.8 458 41.3
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 7.0e-68 262.3 457 42.0
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 6.0e-67 259.2 455 40.0
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 5.6e-65 252.7 454 40.7
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 1.2e-64 251.5 454 38.8
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 2.8e-64 250.4 460 40.2
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 4.7e-64 249.6 444 41.7
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 2.3e-63 247.3 446 42.4
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 5.2e-63 246.1 456 37.3
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 9.8e-62 241.9 489 38.2
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.3e-61 241.5 457 40.0
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 2.9e-61 240.4 462 39.0
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 3.7e-61 240.0 455 39.6
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 3.7e-61 240.0 458 39.7
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 4.9e-61 239.6 456 39.9
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 3.2e-60 236.9 455 39.1
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 4.1e-60 236.5 462 38.5
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 5.4e-60 236.1 453 41.5
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 7.1e-60 235.7 459 38.6
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 3.5e-59 233.4 454 37.0
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 4.6e-59 233.0 454 41.2
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 6.0e-59 232.6 458 39.1
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 7.8e-59 232.3 460 39.1
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 1.0e-58 231.9 455 38.9
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.2e-56 224.9 455 38.5
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 2.1e-56 224.2 456 39.3
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 2.8e-56 223.8 551 34.3
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 4.0e-55 219.9 464 35.8
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.5e-54 218.0 459 37.0
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 2.6e-54 217.2 454 38.1
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 7.6e-54 215.7 412 37.9
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 1.7e-53 214.5 458 37.8
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.7e-53 214.5 455 37.4
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 2.2e-53 214.2 462 36.8
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.4e-52 211.5 457 37.9
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 1.9e-52 211.1 456 36.6
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 9.2e-52 208.8 452 36.5
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 9.2e-52 208.8 457 37.9
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 1.2e-51 208.4 448 38.8
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 3.5e-51 206.8 453 36.4
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 7.8e-51 205.7 465 36.3
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 7.8e-51 205.7 457 37.2
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 1.0e-50 205.3 465 36.3
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 1.3e-50 204.9 455 36.3
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.7e-50 204.5 472 38.8
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 3.0e-50 203.8 459 34.2
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 6.6e-50 202.6 448 38.2
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 1.1e-49 201.8 455 34.9
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 4.3e-49 199.9 459 38.3
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 4.3e-49 199.9 457 37.6
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.1e-48 197.6 469 36.9
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 1.1e-47 195.3 448 37.1
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 6.8e-47 192.6 460 35.0
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 6.8e-47 192.6 456 36.8
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 4.4e-46 189.9 459 35.9
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 4.4e-46 189.9 460 35.2
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 7.6e-46 189.1 442 36.9
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 9.9e-46 188.7 387 37.2
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 2.9e-45 187.2 452 35.0
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 3.8e-45 186.8 463 34.6
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 3.8e-45 186.8 449 36.7
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 4.9e-45 186.4 440 35.9
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 1.1e-44 185.3 465 36.3
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 1.1e-44 185.3 472 35.4
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 5.4e-44 183.0 464 35.6
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 7.1e-44 182.6 475 35.8
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 7.1e-44 182.6 481 34.1
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 9.3e-44 182.2 453 35.5
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 1.6e-43 181.4 463 34.3
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 1.0e-42 178.7 472 35.4
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 1.0e-42 178.7 461 34.9
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 3.9e-42 176.8 472 34.7
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 2.5e-41 174.1 461 34.3
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 7.3e-41 172.6 392 35.2
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.6e-40 171.4 418 34.7
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 4.8e-40 169.9 388 37.1
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 9.0e-39 165.6 296 40.9
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 9.0e-39 165.6 356 37.1
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 9.0e-39 165.6 446 31.4
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 5.8e-38 162.9 449 35.4
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 1.3e-37 161.8 446 35.7
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 2.4e-36 157.5 496 33.7
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 7.1e-36 156.0 457 35.2
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 1.6e-35 154.8 444 30.0
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 4.6e-35 153.3 455 32.5
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 6.0e-35 152.9 464 31.7
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 1.3e-34 151.8 465 32.3
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.7e-34 151.4 465 32.9
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 2.3e-34 151.0 455 31.2
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 3.3e-33 147.1 446 32.3
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 4.3e-33 146.7 466 32.6
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 3.6e-32 143.7 480 31.0
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 8.1e-32 142.5 452 31.6
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 1.4e-31 141.7 466 32.4
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 2.6e-30 137.5 384 34.6
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 4.9e-29 133.3 450 31.3
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 6.4e-29 132.9 284 36.6
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 6.4e-29 132.9 479 29.0
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 8.4e-29 132.5 459 31.2
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 1.1e-28 132.1 454 30.0
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 1.1e-28 132.1 452 31.2
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 2.4e-28 131.0 455 31.9
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 7.1e-28 129.4 449 30.1
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 7.1e-28 129.4 469 31.1
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 7.9e-27 125.9 438 31.1
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 1.3e-26 125.2 454 29.5
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 3.0e-26 124.0 251 39.0
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 5.1e-26 123.2 450 28.7
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 4.3e-25 120.2 449 28.1
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 9.6e-25 119.0 365 33.2
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 1.3e-24 118.6 449 28.1
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 3.7e-24 117.1 281 39.1
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 4.8e-24 116.7 450 27.6
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 4.8e-24 116.7 467 29.6
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 2.4e-23 114.4 438 29.9
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 2.6e-22 110.9 440 29.3
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 2.6e-22 110.9 450 26.4
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 1.0e-21 109.0 407 27.5
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 1.3e-21 108.6 285 30.5
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 6.5e-21 106.3 302 30.5
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 2.5e-20 104.4 377 29.7
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 9.3e-20 102.4 320 30.9
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 2.1e-19 101.3 450 27.6
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 2.7e-19 100.9 136 53.7
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 4.6e-19 100.1 455 30.1
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 1.3e-18 98.6 449 27.4
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 1.8e-18 98.2 308 32.8
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 2.3e-18 97.8 410 28.8
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 3.9e-18 97.1 255 37.3
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 8.7e-18 95.9 445 28.1
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 1.1e-17 95.5 445 28.1
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 2.5e-17 94.4 266 31.2
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 4.3e-17 93.6 282 31.9
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 5.7e-17 93.2 475 30.7
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 7.4e-17 92.8 315 32.1
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 9.6e-17 92.4 458 26.9
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 9.6e-17 92.4 477 25.4
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 3.7e-16 90.5 375 28.5
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 1.1e-15 89.0 320 28.8
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 1.1e-15 89.0 446 28.5
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 6.9e-15 86.3 244 31.1
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 9.0e-15 85.9 440 27.3
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 2.6e-14 84.3 141 45.4
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 3.4e-14 84.0 456 24.8
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 4.5e-14 83.6 302 28.5
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 1.3e-13 82.0 141 40.4
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 3.8e-13 80.5 326 30.1
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 5.0e-13 80.1 133 43.6
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 8.5e-13 79.3 186 34.9
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 8.5e-13 79.3 160 39.4
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 1.4e-12 78.6 440 26.4
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 4.2e-12 77.0 285 32.3
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 7.2e-12 76.3 281 28.5
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 9.3e-12 75.9 116 50.9
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 3.6e-11 73.9 282 28.4
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 3.0e-10 70.9 368 25.3
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 1.1e-09 68.9 144 38.2
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.5e-09 67.8 188 35.1
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 4.3e-09 67.0 136 35.3
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 4.3e-09 67.0 451 24.4
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 4.8e-08 63.5 215 33.0
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 1.8e-07 61.6 188 31.9
Actinidia19914 Actinidia chinensis HOM05D000020 ORTHO05D000156 3.1e-07 60.8 113 37.2
MBI15_g07765_MAGBIO Magnolia biondii HOM05D005497 ORTHO05D006733 3.1e-07 60.8 178 30.9
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 4.1e-07 60.5 141 31.2
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 1.2e-06 58.9 442 24.9
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 3.4e-06 57.4 450 22.9
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 3.4e-06 57.4 160 33.8
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 5.9e-06 56.6 76 44.7


User provided reference genes

Program Settings