Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0007040 Simmondsia chinensis HOM05D007944 ORTHO05D010014 3.4e-62 241.5 125 100.0
COL.COLO4_24344 Corchorus olitorius HOM05D007944 ORTHO05D010014 2.1e-14 82.8 53 71.7
Manes.06G083900 Manihot esculenta HOM05D007944 ORTHO05D010014 2.1e-14 82.8 53 71.7
Potri.015G058500 Populus trichocarpa HOM05D007944 ORTHO05D010014 2.1e-14 82.8 53 69.8
Gohir.D03G096800 Gossypium hirsutum HOM05D007944 ORTHO05D010014 4.6e-14 81.6 53 69.8
Gorai.003G101600 Gossypium raimondii HOM05D007944 ORTHO05D010014 4.6e-14 81.6 53 69.8
THA.LOC104818349 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 4.6e-14 81.6 53 71.7
Thecc.03G102900 Theobroma cacao HOM05D007944 ORTHO05D010014 6.0e-14 81.3 53 67.9
Gohir.A03G070400 Gossypium hirsutum HOM05D007944 ORTHO05D010014 1.3e-13 80.1 53 67.9
GSVIVG01008105001 Vitis vinifera HOM05D007944 ORTHO05D010014 1.3e-13 80.1 53 66.0
CSS0002657 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 2.3e-13 79.3 53 66.0
CSS0037671 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 2.3e-13 79.3 53 66.0
HanXRQChr04g0110041 Helianthus annuus HOM05D007944 ORTHO05D010014 3.0e-13 79.0 53 66.0
THA.LOC109116171 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 3.0e-13 79.0 53 67.9
TAR629G2843 Trochodendron aralioides HOM05D007944 ORTHO05D010014 3.9e-13 78.6 49 71.4
Duzib084G0160 Durio zibethinus HOM05D007944 ORTHO05D010014 6.6e-13 77.8 53 66.0
Hma1.2p1_0060F.1_g033020 Hydrangea macrophylla HOM05D007944 ORTHO05D010014 6.6e-13 77.8 53 66.0
Nn3g17462 Nelumbo nucifera HOM05D007944 ORTHO05D010014 8.6e-13 77.4 53 71.7
BcaB01g05682 Brassica carinata HOM05D007944 ORTHO05D010014 1.1e-12 77.0 53 64.2
A03p03550 Brassica napus HOM05D007944 ORTHO05D010014 1.5e-12 76.6 53 62.3
BraA03t09705Z Brassica rapa HOM05D007944 ORTHO05D010014 1.5e-12 76.6 53 62.3
CAN.G1228.17 Capsicum annuum HOM05D007944 ORTHO05D010014 1.9e-12 76.3 53 64.2
Ciclev10023235m.g Citrus clementina HOM05D007944 ORTHO05D010014 2.5e-12 75.9 53 66.0
BcaB01g05641 Brassica carinata HOM05D007944 ORTHO05D010014 3.3e-12 75.5 53 60.4
BolC3t12937H Brassica oleracea HOM05D007944 ORTHO05D010014 3.3e-12 75.5 53 60.4
Lalb_Chr13g0302811 Lupinus albus HOM05D007944 ORTHO05D010014 3.3e-12 75.5 53 66.0
AT5G08040 Arabidopsis thaliana HOM05D007944 ORTHO05D010014 4.3e-12 75.1 52 57.7
PGR083G1417 Punica granatum HOM05D007944 ORTHO05D010014 4.3e-12 75.1 53 62.3
Aa31LG3G18500 Aethionema arabicum HOM05D000813 ORTHO05D004282 5.6e-12 74.7 61 57.4
Phvul.003G184100 Phaseolus vulgaris HOM05D007944 ORTHO05D010014 5.6e-12 74.7 53 62.3
Lsat_1_v5_gn_1_14420 Lactuca sativa HOM05D007944 ORTHO05D010014 7.3e-12 74.3 53 62.3
Lj4g0027267 Lotus japonicus HOM05D007944 ORTHO05D010014 7.3e-12 74.3 52 65.4
PGSC0003DMG400024536 Solanum tuberosum HOM05D007944 ORTHO05D010014 9.5e-12 73.9 53 62.3
Ca_21766_v3 Cicer arietinum L. HOM05D007944 ORTHO05D010014 1.2e-11 73.6 53 66.0
Thhalv10015226m.g Eutrema salsugineum HOM05D007944 ORTHO05D010014 1.2e-11 73.6 53 60.4
Carub.0006s0693 Capsella rubella HOM05D007944 ORTHO05D010014 1.6e-11 73.2 53 54.7
Migut.D01638 Erythranthe guttata HOM05D007944 ORTHO05D010014 2.1e-11 72.8 53 60.4
AL6G18390 Arabidopsis lyrata HOM05D007944 ORTHO05D010014 2.8e-11 72.4 53 56.6
C03p04000 Brassica napus HOM05D007944 ORTHO05D010014 2.8e-11 72.4 53 58.5
ClCG04G011750 Citrullus lanatus HOM05D007944 ORTHO05D010014 2.8e-11 72.4 49 67.3
MELO3C002035.2 Cucumis melo HOM05D007944 ORTHO05D010014 2.8e-11 72.4 49 67.3
Glyma.05G020300 Glycine max HOM05D007944 ORTHO05D010014 2.8e-11 72.4 53 62.3
Glyma.17G079100 Glycine max HOM05D007944 ORTHO05D010014 2.8e-11 72.4 53 62.3
C02p03390 Brassica napus HOM05D007944 ORTHO05D010014 3.6e-11 72.0 53 58.5
BolC2t06301H Brassica oleracea HOM05D007944 ORTHO05D010014 3.6e-11 72.0 53 58.5
BraA02t04940Z Brassica rapa HOM05D007944 ORTHO05D010014 3.6e-11 72.0 53 58.5
Os12g0575200 Oryza sativa ssp. japonica HOM05D007944 ORTHO05D010014 3.6e-11 72.0 53 62.3
Sp6g34910 Schrenkiella parvula HOM05D000813 ORTHO05D004282 3.6e-11 72.0 53 56.6
BcaB05g21585 Brassica carinata HOM05D007944 ORTHO05D010014 4.7e-11 71.6 53 56.6
HanXRQChr02g0044781 Helianthus annuus HOM05D007944 ORTHO05D010014 4.7e-11 71.6 52 59.6
Medtr4g109610 Medicago truncatula HOM05D007944 ORTHO05D010014 4.7e-11 71.6 53 62.3
CiPaw.11G054400 Carya illinoinensis HOM05D007944 ORTHO05D010014 6.2e-11 71.2 53 66.0
MD06G1225800 Malus domestica HOM05D007944 ORTHO05D010014 8.1e-11 70.9 53 66.0
MD14G1212700 Malus domestica HOM05D007944 ORTHO05D010014 8.1e-11 70.9 53 66.0
BcaC03g13205 Brassica carinata HOM05D007944 ORTHO05D010014 1.1e-10 70.5 53 56.6
CANSAT56G0188 Cannabis sativa HOM05D007944 ORTHO05D010014 1.1e-10 70.5 53 62.3
Prupe.5G206000 Prunus persica HOM05D007944 ORTHO05D010014 1.1e-10 70.5 53 62.3
Sed0006151 Sechium edule HOM05D007944 ORTHO05D010014 1.1e-10 70.5 50 64.0
Lalb_Chr12g0197241 Lupinus albus HOM05D007944 ORTHO05D010014 1.8e-10 69.7 53 58.5
CARHR205140 Cardamine hirsuta HOM05D007944 ORTHO05D010014 2.3e-10 69.3 50 54.0
TWI60G0934 Tripterygium wilfordii HOM05D007944 ORTHO05D010014 2.3e-10 69.3 53 62.3
BcaB08g37295 Brassica carinata HOM05D007944 ORTHO05D010014 4.0e-10 68.6 53 54.7
C09p68880 Brassica napus HOM05D007944 ORTHO05D010014 4.0e-10 68.6 53 50.9
Duzib205G1703 Durio zibethinus HOM05D007944 ORTHO05D010014 4.0e-10 68.6 53 60.4
BolC9t59634H Brassica oleracea HOM05D007944 ORTHO05D010014 5.2e-10 68.2 53 50.9
BraA10t44908Z Brassica rapa HOM05D007944 ORTHO05D010014 5.2e-10 68.2 50 54.0
Psat4g047680 Pisum sativum HOM05D007944 ORTHO05D010014 8.9e-10 67.4 53 58.5
RcHm_v2.0_Chr7g0183191 Rosa chinensis HOM05D007944 ORTHO05D010014 5.8e-09 64.7 53 56.6
Aqoxy3G03680 Aquilegia oxysepala HOM05D007944 ORTHO05D010014 7.5e-09 64.3 53 60.4
FvH4_5g13750 Fragaria vesca HOM05D007944 ORTHO05D010014 6.4e-08 61.2 53 54.7
A10p28590 Brassica napus HOM05D007944 ORTHO05D010014 8.3e-08 60.8 44 56.8
CsaV3_1G006040 Cucumis sativus L. HOM05D007944 ORTHO05D010014 1.9e-07 59.7 52 57.7
Sed0010401 Sechium edule HOM05D007944 ORTHO05D010014 7.1e-07 57.8 46 56.5
Pp3c3_35330 Physcomitrium patens HOM05D007944 ORTHO05D010014 1.2e-06 57.0 53 50.9
Os03g0603500 Oryza sativa ssp. japonica HOM05D007944 ORTHO05D010014 7.8e-06 54.3 45 55.6


User provided reference genes

Program Settings