Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 2.1e-109 399.1 200 100.0
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 1.1e-54 217.2 205 60.0
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 1.9e-54 216.5 209 58.9
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 6.1e-53 211.5 210 59.5
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 2.6e-51 206.1 209 56.5
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 1.7e-50 203.4 202 55.0
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 6.3e-50 201.4 168 60.1
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 1.4e-49 200.3 200 56.0
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 1.8e-49 199.9 199 56.3
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 1.2e-48 197.2 217 53.9
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 2.0e-48 196.4 204 54.9
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 1.7e-47 193.4 201 56.2
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 1.7e-47 193.4 162 61.7
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 2.9e-47 192.6 188 59.0
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 3.8e-47 192.2 162 62.3
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 6.5e-47 191.4 162 61.7
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 1.1e-46 190.7 153 64.7
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 1.5e-46 190.3 182 59.3
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 1.5e-46 190.3 162 61.7
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 2.5e-46 189.5 164 61.6
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 4.2e-46 188.7 201 54.7
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 4.2e-46 188.7 172 58.1
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 9.5e-46 187.6 205 53.7
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 9.5e-46 187.6 158 62.0
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 9.5e-46 187.6 214 51.9
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 1.2e-45 187.2 165 61.2
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 2.1e-45 186.4 216 50.5
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 4.7e-45 185.3 197 54.3
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 4.7e-45 185.3 189 56.6
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 6.1e-45 184.9 200 51.0
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 6.1e-45 184.9 200 51.0
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 1.0e-44 184.1 167 60.5
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.0e-44 184.1 200 51.0
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 1.8e-44 183.3 208 52.4
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 3.0e-44 182.6 198 53.5
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 4.0e-44 182.2 153 60.8
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 5.2e-44 181.8 162 59.3
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 6.8e-44 181.4 222 50.0
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 6.8e-44 181.4 203 54.2
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 2.0e-43 179.9 201 49.3
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 5.7e-43 178.3 202 48.0
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 5.7e-43 178.3 173 56.6
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 7.5e-43 177.9 200 49.0
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 3.7e-42 175.6 158 60.1
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 3.7e-42 175.6 159 59.7
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 6.3e-42 174.9 168 57.7
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 1.1e-41 174.1 171 56.7
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 1.1e-41 174.1 148 62.2
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 1.4e-41 173.7 177 53.7
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 2.4e-41 172.9 215 47.9
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 3.1e-41 172.6 163 57.7
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 9.2e-41 171.0 180 54.4
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 9.2e-41 171.0 162 56.8
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 1.2e-40 170.6 162 56.8
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 4.5e-40 168.7 231 46.3
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 5.9e-40 168.3 204 49.5
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 5.9e-40 168.3 200 47.5
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.9e-40 168.3 200 47.5
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 1.3e-39 167.2 241 45.2
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 1.7e-39 166.8 205 48.8
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 1.7e-39 166.8 209 49.8
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 2.3e-39 166.4 157 56.7
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 2.9e-39 166.0 218 46.3
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 8.6e-39 164.5 198 52.0
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 1.1e-38 164.1 214 47.7
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 9.5e-38 161.0 157 53.5
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 1.6e-37 160.2 162 54.3
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 2.8e-37 159.5 207 46.4
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 3.6e-37 159.1 201 48.8
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 4.7e-37 158.7 172 51.7
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 4.7e-37 158.7 202 47.5
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 1.0e-36 157.5 238 44.1
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 1.4e-36 157.1 161 52.8
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 6.8e-36 154.8 211 47.4
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 3.4e-35 152.5 168 50.6
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 5.8e-35 151.8 221 44.8
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 9.8e-35 151.0 178 48.3
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 9.8e-35 151.0 163 56.4
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 1.3e-34 150.6 178 48.3
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 2.2e-34 149.8 211 45.0
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 2.9e-34 149.4 217 46.1
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 2.9e-34 149.4 210 46.2
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 4.9e-34 148.7 215 47.0
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 4.9e-34 148.7 209 45.0
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 2.4e-33 146.4 209 45.0
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 2.4e-33 146.4 209 45.0
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 2.4e-33 146.4 209 45.0
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 4.1e-33 145.6 213 44.6
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 4.1e-33 145.6 215 44.7
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 5.4e-33 145.2 192 49.0
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 3.5e-32 142.5 212 41.0
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.7e-31 140.2 190 45.8
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 3.9e-31 139.0 212 42.5
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 3.9e-31 139.0 212 42.5
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 1.5e-30 137.1 215 44.7
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 2.5e-30 136.3 171 49.1
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 3.3e-30 136.0 208 43.3
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 2.8e-29 132.9 221 42.1
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 2.8e-29 132.9 107 56.1
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 3.6e-29 132.5 186 46.2
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 4.7e-29 132.1 223 40.4
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 1.1e-28 131.0 99 66.7
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 1.1e-28 131.0 99 66.7
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 1.1e-28 131.0 99 66.7
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 3.1e-28 129.4 91 67.0
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 6.8e-28 128.3 207 41.1
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 1.5e-27 127.1 154 50.6
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 5.8e-27 125.2 195 43.1
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 4.1e-25 119.0 176 47.2
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.0e-23 114.4 107 55.1
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 1.3e-23 114.0 201 44.8
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 2.3e-23 113.2 87 59.8
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 6.6e-23 111.7 87 58.6
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 6.6e-23 111.7 164 40.9
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 1.9e-22 110.2 162 40.1
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 1.9e-22 110.2 195 39.0
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 3.3e-22 109.4 108 50.0
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 1.5e-19 100.5 113 52.2
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 9.9e-19 97.8 91 49.5
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 4.6e-16 89.0 86 47.7
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 4.6e-16 89.0 86 47.7
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 5.1e-15 85.5 67 71.6
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 3.6e-13 79.3 110 44.5
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 1.4e-12 77.4 43 74.4
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 6.4e-10 68.6 162 31.5
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 3.2e-09 66.2 88 39.8
Glyma.07G090700 Glycine max HOM05D005829 ORTHO05D007246 2.1e-08 63.5 105 38.1
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 1.7e-07 60.5 36 63.9
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 5.1e-07 58.9 198 30.3
Phvul.004G158500 Phaseolus vulgaris HOM05D005829 ORTHO05D007246 8.7e-07 58.2 104 34.6
A05p27070 Brassica napus HOM05D005829 ORTHO05D007246 7.3e-06 55.1 46 58.7
FAN22G1271 Fragaria x ananassa HOM05D038641 ORTHO05D035590 9.6e-06 54.7 65 46.2


User provided reference genes

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