Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 1.5e-80 303.1 190 100.0
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 4.0e-54 215.3 171 83.0
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 1.3e-52 210.3 198 73.7
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 4.9e-52 208.4 183 77.0
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 4.9e-52 208.4 196 73.5
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 1.1e-51 207.2 160 81.9
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 4.2e-51 205.3 192 72.4
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 4.2e-51 205.3 192 71.9
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 5.4e-51 204.9 192 71.9
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 9.3e-51 204.1 162 81.5
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 2.7e-50 202.6 188 71.8
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 2.7e-50 202.6 189 72.0
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 6.0e-50 201.4 190 72.6
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 6.0e-50 201.4 191 71.7
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 6.0e-50 201.4 191 71.7
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 7.9e-50 201.1 190 71.1
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 1.3e-49 200.3 191 71.7
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 2.3e-49 199.5 171 76.0
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 3.0e-49 199.1 192 70.3
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 3.0e-49 199.1 161 79.5
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 3.0e-49 199.1 161 79.5
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 3.9e-49 198.7 161 79.5
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 5.1e-49 198.4 192 70.3
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 1.1e-48 197.2 174 74.7
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 1.1e-48 197.2 189 72.0
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 1.5e-48 196.8 196 69.9
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 3.3e-48 195.7 199 69.3
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 3.3e-48 195.7 189 72.0
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 4.3e-48 195.3 173 73.4
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 9.6e-48 194.1 182 73.6
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 9.6e-48 194.1 154 79.9
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 1.3e-47 193.7 177 72.9
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 1.3e-47 193.7 181 74.6
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 1.6e-47 193.4 161 77.6
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 1.6e-47 193.4 201 70.1
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 2.8e-47 192.6 196 68.9
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 2.8e-47 192.6 180 73.3
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 4.8e-47 191.8 173 74.6
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 6.2e-47 191.4 161 75.2
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 6.2e-47 191.4 179 73.2
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 8.1e-47 191.0 173 74.0
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 1.4e-46 190.3 194 66.5
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 1.8e-46 189.9 192 66.1
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 4.0e-46 188.7 173 73.4
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 4.0e-46 188.7 196 68.9
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 6.9e-46 188.0 190 69.5
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 9.0e-46 187.6 147 83.7
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 1.2e-45 187.2 149 81.9
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 1.5e-45 186.8 159 76.7
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 2.0e-45 186.4 175 72.0
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 2.0e-45 186.4 161 75.2
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.0e-45 186.4 181 72.4
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 2.6e-45 186.0 151 80.8
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 2.6e-45 186.0 178 69.7
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 2.6e-45 186.0 181 71.3
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 4.5e-45 185.3 150 80.0
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 5.8e-45 184.9 156 76.3
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 5.8e-45 184.9 181 70.2
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 7.6e-45 184.5 172 72.7
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 9.9e-45 184.1 180 68.9
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 9.9e-45 184.1 180 68.9
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 9.9e-45 184.1 179 69.8
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 9.9e-45 184.1 193 67.4
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 1.3e-44 183.7 172 70.3
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 1.7e-44 183.3 179 69.8
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 2.2e-44 183.0 191 64.9
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 2.9e-44 182.6 179 69.8
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.9e-44 182.6 166 73.5
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.9e-44 182.6 193 66.8
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 2.9e-44 182.6 181 69.1
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 3.8e-44 182.2 167 72.5
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 4.9e-44 181.8 160 73.8
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 6.4e-44 181.4 178 70.8
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 1.9e-43 179.9 178 68.5
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 1.9e-43 179.9 189 64.0
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 1.9e-43 179.9 189 64.0
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 2.4e-43 179.5 159 75.5
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 2.4e-43 179.5 171 70.2
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 3.2e-43 179.1 190 67.4
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 4.2e-43 178.7 190 66.8
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 5.5e-43 178.3 148 79.1
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 7.1e-43 177.9 190 65.8
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 9.3e-43 177.6 178 69.1
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 9.3e-43 177.6 178 69.1
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 9.3e-43 177.6 174 70.1
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 1.2e-42 177.2 149 78.5
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 2.7e-42 176.0 196 63.8
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 2.7e-42 176.0 190 65.8
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 2.7e-42 176.0 191 64.9
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 2.7e-42 176.0 187 64.7
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 3.5e-42 175.6 178 68.0
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 4.6e-42 175.3 190 65.3
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 6.0e-42 174.9 182 67.6
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 2.3e-41 172.9 192 64.6
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 1.5e-40 170.2 195 62.1
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 1.5e-40 170.2 161 71.4
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 1.9e-40 169.9 161 72.7
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 2.5e-40 169.5 178 66.3
Prupe.5G186300 Prunus persica HOM05D006349 ORTHO05D008205 4.8e-39 165.2 185 62.2
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 1.8e-38 163.3 171 67.8
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 3.1e-38 162.5 178 64.0
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 4.0e-38 162.2 158 66.5
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 1.1e-35 154.1 192 57.8
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 1.9e-35 153.3 134 76.9
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 2.7e-34 149.4 177 58.2
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 1.1e-32 144.1 173 63.0
FAN08G2244 Fragaria x ananassa HOM05D006349 ORTHO05D008205 3.4e-29 132.5 181 59.7
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 7.2e-27 124.8 158 58.9
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 1.0e-25 120.9 164 56.7
Mapoly0105s0011 Marchantia polymorpha HOM05D006349 ORTHO05D008205 9.7e-24 114.4 156 55.1
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 2.2e-23 113.2 101 59.4
SGA_v2.0_scaffold294G47475 Striga asiatica HOM05D006349 ORTHO05D008205 6.9e-22 108.2 127 56.7
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 9.0e-22 107.8 146 58.2
AagrBONN_evm.TU.Sc2ySwM_362.857 Anthoceros agrestis HOM05D006349 ORTHO05D008205 2.6e-21 106.3 186 49.5
Pp3c25_12400 Physcomitrium patens HOM05D006349 ORTHO05D008205 1.2e-18 97.4 109 66.1
CARHR103880 Cardamine hirsuta HOM05D006349 ORTHO05D008205 3.0e-17 92.8 140 56.4
BcaC03g15526 Brassica carinata HOM05D006349 ORTHO05D008205 5.1e-17 92.0 110 59.1
A02p19550 Brassica napus HOM05D006349 ORTHO05D008205 2.0e-16 90.1 74 59.5
CBR_g48703 Chara braunii HOM05D006349 ORTHO05D008205 6.3e-15 85.1 162 48.1
Nn8g40820 Nelumbo nucifera HOM05D006349 ORTHO05D008205 2.6e-13 79.7 122 51.6
Pp3c24_420 Physcomitrium patens HOM05D006349 ORTHO05D008205 4.8e-07 58.9 158 41.8


User provided reference genes

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