Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 1.7e-188 662.9 446 100.0
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 2.7e-93 346.7 460 58.9
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 1.0e-92 344.7 459 63.2
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 2.4e-89 333.6 463 61.6
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 3.1e-89 333.2 458 59.2
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 4.1e-89 332.8 460 57.2
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 6.9e-89 332.0 461 59.7
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 4.5e-88 329.3 460 59.3
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.9e-86 323.9 459 57.3
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 5.5e-86 322.4 457 60.8
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 2.3e-84 317.0 460 57.6
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 3.9e-84 316.2 465 60.4
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 8.8e-84 315.1 457 54.7
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 6.3e-82 308.9 462 56.9
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 1.8e-81 307.4 465 56.6
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 2.4e-81 307.0 461 56.4
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.4e-81 307.0 459 59.3
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 5.3e-81 305.8 460 56.7
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 5.3e-81 305.8 462 55.0
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 5.3e-81 305.8 462 57.8
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 6.9e-81 305.4 461 55.5
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 3.4e-80 303.1 456 56.4
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 8.5e-79 298.5 460 58.3
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 1.4e-78 297.7 454 57.0
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 4.2e-78 296.2 462 58.2
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 5.5e-78 295.8 461 59.9
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 7.2e-78 295.4 461 60.1
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 2.1e-77 293.9 463 55.5
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.6e-77 293.1 461 59.9
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.0e-76 291.6 464 48.5
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.0e-76 291.6 484 52.7
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 1.4e-76 291.2 464 55.2
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 3.9e-76 289.7 464 55.4
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 8.8e-76 288.5 460 57.0
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 1.5e-75 287.7 462 54.5
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 1.5e-75 287.7 467 54.0
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 4.4e-75 286.2 463 54.0
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 5.7e-75 285.8 463 56.8
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 1.7e-74 284.3 459 56.2
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.7e-74 284.3 465 51.4
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 2.2e-74 283.9 464 54.3
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 1.4e-73 281.2 503 52.3
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 3.1e-73 280.0 460 58.9
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 4.1e-73 279.6 474 55.7
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 2.6e-72 276.9 462 57.1
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 7.7e-72 275.4 462 56.7
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 1.0e-71 275.0 464 56.2
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 2.9e-71 273.5 459 57.7
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 3.8e-71 273.1 469 55.9
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.5e-70 271.2 461 56.6
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 5.5e-70 269.2 462 56.9
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 7.2e-70 268.9 461 58.4
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 1.6e-69 267.7 464 52.2
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 2.7e-69 266.9 466 56.0
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 2.7e-69 266.9 462 53.5
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 2.7e-69 266.9 461 56.2
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 4.7e-69 266.2 460 53.0
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 8.0e-69 265.4 464 55.0
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 1.4e-68 264.6 471 51.6
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 3.0e-68 263.5 468 55.1
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 3.9e-68 263.1 461 58.4
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 5.2e-68 262.7 462 56.5
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 3.3e-67 260.0 463 53.8
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 7.4e-67 258.8 460 55.4
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 6.3e-66 255.8 464 54.7
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 1.1e-65 255.0 458 53.7
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 2.6e-64 250.4 466 55.6
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 1.0e-63 248.4 454 55.3
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 1.3e-63 248.1 461 53.4
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 1.3e-63 248.1 462 53.9
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 2.5e-62 243.8 469 55.2
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 5.5e-62 242.7 473 53.7
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 3.6e-61 240.0 466 55.8
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 8.0e-61 238.8 464 48.9
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.3e-60 237.3 463 53.3
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 3.0e-60 236.9 465 54.6
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 5.2e-60 236.1 456 53.3
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 4.4e-59 233.0 455 53.4
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 7.5e-59 232.3 465 48.6
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 1.3e-58 231.5 465 49.5
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 1.1e-57 228.4 461 50.8
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 1.1e-54 218.4 465 52.0
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.5e-54 218.0 444 53.6
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.5e-54 218.0 471 51.0
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 3.2e-54 216.9 459 48.6
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 5.5e-54 216.1 459 48.4
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 2.1e-53 214.2 467 52.5
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 8.0e-53 212.2 472 47.9
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 3.0e-52 210.3 479 47.4
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 4.0e-52 209.9 473 45.7
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 6.3e-50 202.6 467 48.0
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 1.6e-48 198.0 466 50.6
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 2.0e-48 197.6 479 49.1
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 3.5e-48 196.8 461 50.5
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 1.7e-47 194.5 473 45.9
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 6.6e-47 192.6 458 53.3
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 5.5e-46 189.5 460 52.8
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 4.7e-45 186.4 476 41.6
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 1.4e-44 184.9 448 48.2
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 1.5e-43 181.4 472 44.1
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 3.4e-43 180.3 475 44.4
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 5.7e-43 179.5 470 47.0
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 7.5e-43 179.1 468 48.7
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.7e-42 177.9 482 43.2
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 8.3e-42 175.6 462 49.1
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 4.1e-41 173.3 275 55.3
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 2.0e-40 171.0 472 46.0
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 1.3e-39 168.3 472 46.4
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 6.6e-39 166.0 470 46.2
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 1.5e-38 164.9 347 52.4
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 9.5e-38 162.2 473 41.6
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 1.6e-37 161.4 469 43.5
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 6.4e-34 149.4 269 50.2
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.2e-32 145.2 323 52.9
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 8.6e-31 139.0 470 43.8
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 1.1e-30 138.7 461 44.3
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.1e-30 138.7 207 61.8
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.1e-28 132.1 147 59.9
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 6.8e-28 129.4 501 42.7
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 3.4e-27 127.1 105 70.5
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.7e-26 124.8 289 44.6
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 1.7e-26 124.8 112 64.3
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 3.2e-25 120.6 74 82.4
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 5.4e-25 119.8 499 40.1
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 7.1e-25 119.4 294 37.1
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 7.1e-25 119.4 104 68.3
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 6.0e-24 116.3 118 63.6
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.3e-23 115.2 133 57.9
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 2.5e-22 110.9 62 83.9
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 7.3e-22 109.4 66 77.3
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 2.8e-21 107.5 141 54.6
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 4.7e-21 106.7 114 58.8
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 1.4e-17 95.1 98 61.2
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 3.2e-17 94.0 494 37.9
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.6e-16 91.7 99 58.6
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 6.0e-16 89.7 122 63.1
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.3e-15 88.6 73 69.9
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.3e-15 88.6 73 69.9
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 2.3e-15 87.8 85 56.5
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 5.1e-15 86.7 58 75.9
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 5.8e-11 73.2 113 50.4
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 5.1e-07 60.1 76 53.9


User provided reference genes

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