Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0006000 Simmondsia chinensis HOM05D000132 ORTHO05D000058 1.3e-47 193.7 132 100.0
vmacro00467 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 5.8e-24 115.2 132 72.7
Manes.14G036600 Manihot esculenta HOM05D000132 ORTHO05D000058 3.2e-22 109.4 132 69.7
ClCG05G007280 Citrullus lanatus HOM05D000132 ORTHO05D000058 9.2e-22 107.8 127 73.2
Sed0024404 Sechium edule HOM05D000132 ORTHO05D000058 9.2e-22 107.8 129 72.1
Duzib205G1345 Durio zibethinus HOM05D000132 ORTHO05D000058 1.2e-21 107.5 132 68.2
Actinidia27500 Actinidia chinensis HOM05D000132 ORTHO05D000058 1.6e-21 107.1 132 69.7
vmacro00466 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 2.7e-21 106.3 132 69.7
MELO3C006805.2 Cucumis melo HOM05D000132 ORTHO05D000058 3.5e-21 105.9 126 72.2
CsaV3_3G016040 Cucumis sativus L. HOM05D000132 ORTHO05D000058 6.0e-21 105.1 126 72.2
Thecc.03G154500 Theobroma cacao HOM05D000132 ORTHO05D000058 1.0e-20 104.4 132 68.9
Duzib084G0873 Durio zibethinus HOM05D000132 ORTHO05D000058 3.9e-20 102.4 128 68.0
arahy.Tifrunner.gnm1.ann1.8DF3UX Arachis hypogaea HOM05D000132 ORTHO05D000058 6.6e-20 101.7 132 68.2
arahy.Tifrunner.gnm1.ann1.S0APF5 Arachis hypogaea HOM05D000132 ORTHO05D000058 1.9e-19 100.1 132 67.4
EL10Ac3g06759 Beta vulgaris HOM05D000132 ORTHO05D000058 3.3e-19 99.4 132 65.2
Potri.003G108200 Populus trichocarpa HOM05D000132 ORTHO05D000058 3.3e-19 99.4 132 62.9
vmacro15537 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 4.3e-19 99.0 130 65.4
arahy.Tifrunner.gnm1.ann1.9C4FWF Arachis hypogaea HOM05D000132 ORTHO05D000058 9.6e-19 97.8 132 66.7
Sed0011973 Sechium edule HOM05D000132 ORTHO05D000058 9.6e-19 97.8 133 62.4
COL.COLO4_14107 Corchorus olitorius HOM05D000132 ORTHO05D000058 1.2e-18 97.4 132 63.6
arahy.Tifrunner.gnm1.ann1.R0L1GN Arachis hypogaea HOM05D000132 ORTHO05D000058 2.1e-18 96.7 131 66.4
Ciclev10007190m.g Citrus clementina HOM05D000132 ORTHO05D000058 2.8e-18 96.3 125 65.6
Lj3g0013375 Lotus japonicus HOM05D000132 ORTHO05D000058 2.8e-18 96.3 132 64.4
QL09p005438 Quercus lobata HOM05D000132 ORTHO05D000058 2.8e-18 96.3 132 65.9
QL10p048076 Quercus lobata HOM05D000132 ORTHO05D000058 2.8e-18 96.3 132 65.9
Sed0015650 Sechium edule HOM05D000132 ORTHO05D000058 2.8e-18 96.3 133 60.9
vmacro15534 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 3.6e-18 95.9 132 63.6
QL09p005555 Quercus lobata HOM05D000132 ORTHO05D000058 4.7e-18 95.5 131 64.9
Rhsim02G0058700 Rhododendron simsii HOM05D000132 ORTHO05D000058 4.7e-18 95.5 130 62.3
Sed0023604 Sechium edule HOM05D000132 ORTHO05D000058 8.1e-18 94.7 132 55.3
Sed0024592 Sechium edule HOM05D000132 ORTHO05D000058 1.1e-17 94.4 132 62.1
Cpa.g.sc3.332 Carica papaya HOM05D000132 ORTHO05D000058 1.4e-17 94.0 132 62.1
ClCG05G007270 Citrullus lanatus HOM05D000132 ORTHO05D000058 1.4e-17 94.0 132 65.2
Ciclev10004274m.g Citrus clementina HOM05D000132 ORTHO05D000058 1.4e-17 94.0 125 67.2
Rhsim02G0058600 Rhododendron simsii HOM05D000132 ORTHO05D000058 3.1e-17 92.8 132 62.9
MELO3C005435.2 Cucumis melo HOM05D000132 ORTHO05D000058 6.9e-17 91.7 132 59.8
Lj3g0013652 Lotus japonicus HOM05D000132 ORTHO05D000058 6.9e-17 91.7 132 62.1
Phvul.011G007900 Phaseolus vulgaris HOM05D000132 ORTHO05D000058 3.4e-16 89.4 129 65.1
CSS0019675 Camellia sinensis var. sinensis HOM05D000132 ORTHO05D000058 1.3e-15 87.4 130 65.4
Hma1.2p1_0187F.1_g082180 Hydrangea macrophylla HOM05D000132 ORTHO05D000058 1.7e-15 87.0 132 61.4
QL09p005660 Quercus lobata HOM05D000132 ORTHO05D000058 1.7e-15 87.0 132 62.9
VMungo1127G0987 Vigna mungo HOM05D000132 ORTHO05D000058 3.8e-15 85.9 129 65.9
Phvul.011G008100 Phaseolus vulgaris HOM05D000132 ORTHO05D000058 1.1e-14 84.3 129 63.6
Ca_19584_v3 Cicer arietinum L. HOM05D000132 ORTHO05D000058 1.4e-14 84.0 133 60.2
AUR62034659 Chenopodium quinoa HOM05D000132 ORTHO05D000058 2.4e-14 83.2 130 62.3
CsaV3_3G016030 Cucumis sativus L. HOM05D000132 ORTHO05D000058 2.4e-14 83.2 132 60.6
Psat7g190560 Pisum sativum HOM05D000132 ORTHO05D000058 3.2e-14 82.8 132 61.4
MELO3C006804.2 Cucumis melo HOM05D000132 ORTHO05D000058 7.1e-14 81.6 132 60.6
Medtr7g028432 Medicago truncatula HOM05D000132 ORTHO05D000058 7.1e-14 81.6 132 60.6
ClCG01G004980 Citrullus lanatus HOM05D000132 ORTHO05D000058 1.2e-13 80.9 135 57.0
QL09p005633 Quercus lobata HOM05D000132 ORTHO05D000058 1.2e-13 80.9 132 62.1
VMungo1127G1817 Vigna mungo HOM05D000132 ORTHO05D000058 1.2e-13 80.9 129 63.6
AUR62008591 Chenopodium quinoa HOM05D000132 ORTHO05D000058 4.6e-13 79.0 130 58.5
Glyma.12G007000 Glycine max HOM05D000132 ORTHO05D000058 7.8e-13 78.2 129 62.8
Medtr4g037720 Medicago truncatula HOM05D000132 ORTHO05D000058 1.0e-12 77.8 132 59.1
Dinv38230 Davidia involucrata HOM05D000132 ORTHO05D000058 2.3e-12 76.6 117 65.0
Glyma.12G007300 Glycine max HOM05D000132 ORTHO05D000058 5.1e-12 75.5 129 61.2
CSS0002440 Camellia sinensis var. sinensis HOM05D000132 ORTHO05D000058 6.2e-10 68.6 55 60.0
Sabra03G0075000 Salix brachista HOM05D000132 ORTHO05D000058 2.0e-08 63.5 55 54.5
Ca_19586_v3 Cicer arietinum L. HOM05D000132 ORTHO05D000058 5.8e-08 62.0 123 57.7
Phvul.011G007800 Phaseolus vulgaris HOM05D000132 ORTHO05D000058 2.9e-07 59.7 55 52.7
Atru.chr1.794 Acer truncatum HOM05D000132 ORTHO05D000058 9.3e-06 54.7 42 61.9


User provided reference genes

Program Settings