Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 4.0e-157 558.1 304 100.0
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 1.5e-95 353.6 301 64.5
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 2.0e-95 353.2 305 62.6
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 1.9e-93 346.7 228 74.6
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 7.0e-93 344.7 320 58.4
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 1.5e-90 337.0 234 70.9
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 3.3e-90 335.9 296 61.8
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 4.3e-90 335.5 297 59.9
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 7.3e-90 334.7 301 61.8
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 1.1e-88 330.9 287 60.6
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 1.1e-88 330.9 230 71.7
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 1.1e-88 330.9 306 59.2
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 1.8e-88 330.1 231 70.1
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 4.0e-88 328.9 231 70.6
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 8.9e-88 327.8 236 69.1
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 1.2e-87 327.4 276 61.6
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 1.5e-87 327.0 236 67.8
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 1.5e-87 327.0 284 59.9
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 5.8e-87 325.1 231 71.9
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 7.5e-87 324.7 300 59.7
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 9.8e-87 324.3 266 62.8
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 3.7e-86 322.4 294 59.5
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 4.9e-86 322.0 231 68.4
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 6.4e-86 321.6 231 68.8
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 8.3e-86 321.2 230 69.1
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 1.9e-85 320.1 224 70.1
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 3.2e-85 319.3 299 57.5
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 4.1e-85 318.9 230 68.7
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 7.1e-85 318.2 236 68.2
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.2e-84 317.4 233 66.5
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 2.1e-84 316.6 276 62.0
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 7.8e-84 314.7 232 68.1
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 1.3e-83 313.9 230 68.3
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.3e-83 313.9 234 67.1
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.7e-83 313.5 234 66.7
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 3.0e-83 312.8 235 67.7
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 3.0e-83 312.8 235 68.1
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 6.6e-83 311.6 231 66.7
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 3.3e-82 309.3 235 67.7
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 4.3e-82 308.9 262 59.5
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 7.3e-82 308.1 233 67.4
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 7.3e-82 308.1 223 68.2
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.6e-81 307.0 305 55.4
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 1.6e-81 307.0 226 67.3
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 3.6e-81 305.8 289 57.1
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 3.6e-81 305.8 235 65.1
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 6.2e-81 305.1 293 57.0
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 6.2e-81 305.1 233 67.0
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 8.1e-81 304.7 230 65.7
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 1.1e-80 304.3 236 64.8
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 1.8e-80 303.5 236 63.6
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 1.8e-80 303.5 230 65.2
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 1.8e-80 303.5 235 66.8
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 1.8e-80 303.5 226 68.1
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 2.3e-80 303.1 235 63.8
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 2.3e-80 303.1 231 66.7
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 2.3e-80 303.1 238 65.1
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 5.2e-80 302.0 236 64.8
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 6.8e-80 301.6 226 65.9
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 2.0e-79 300.1 215 67.0
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 3.4e-79 299.3 270 57.0
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 5.8e-79 298.5 226 66.8
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 5.8e-79 298.5 226 66.8
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 5.8e-79 298.5 236 63.6
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 1.3e-78 297.4 286 54.2
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 1.7e-78 297.0 228 64.0
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 1.7e-78 297.0 313 52.4
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 2.2e-78 296.6 226 66.8
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 2.2e-78 296.6 226 66.8
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 2.2e-78 296.6 228 64.5
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 2.9e-78 296.2 236 62.3
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 2.9e-78 296.2 228 64.0
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 8.3e-78 294.7 233 63.5
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 8.3e-78 294.7 229 65.1
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 1.4e-77 293.9 230 63.9
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 4.1e-77 292.4 234 62.8
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 4.1e-77 292.4 230 63.9
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 7.1e-77 291.6 294 55.1
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 9.2e-77 291.2 299 52.8
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 1.2e-76 290.8 226 64.6
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 1.2e-76 290.8 231 61.5
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.2e-76 290.8 299 52.8
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 1.6e-76 290.4 226 64.2
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 1.6e-76 290.4 226 64.2
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 1.6e-76 290.4 299 53.2
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 2.7e-76 289.7 231 62.8
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 6.0e-76 288.5 302 53.6
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 6.0e-76 288.5 234 62.8
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 3.0e-75 286.2 235 62.1
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 3.9e-75 285.8 199 71.4
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 5.6e-74 282.0 216 66.2
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.6e-73 280.4 231 61.0
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 2.1e-73 280.0 200 71.0
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 2.1e-73 280.0 232 60.3
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 2.1e-73 280.0 225 61.8
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 2.8e-73 279.6 229 62.0
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 3.6e-73 279.3 229 60.7
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 4.7e-73 278.9 223 61.9
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 6.2e-73 278.5 226 62.4
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 3.1e-72 276.2 231 60.2
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 8.9e-72 274.6 225 61.3
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 1.5e-71 273.9 213 64.3
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 2.0e-71 273.5 231 59.3
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 5.8e-71 271.9 275 54.9
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 9.9e-71 271.2 231 59.7
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 2.4e-69 266.5 234 58.1
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 2.4e-69 266.5 235 57.4
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 1.2e-68 264.2 243 56.8
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 3.5e-68 262.7 238 56.7
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 1.3e-67 260.8 227 58.6
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 3.0e-67 259.6 195 65.6
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 1.5e-66 257.3 225 61.3
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.5e-66 257.3 261 52.1
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 2.0e-63 246.9 253 54.2
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 6.0e-60 235.3 186 64.0
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 2.3e-59 233.4 219 56.6
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 8.7e-59 231.5 235 52.8
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 2.5e-58 229.9 144 76.4
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 3.3e-58 229.6 231 54.1
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.3e-58 229.2 274 47.1
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 4.3e-58 229.2 263 47.9
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 2.1e-57 226.9 161 68.3
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 2.8e-57 226.5 233 50.2
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 6.2e-57 225.3 146 71.9
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 6.2e-57 225.3 225 51.1
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 1.4e-56 224.2 232 52.6
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 4.0e-56 222.6 293 46.8
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 1.5e-55 220.7 225 52.9
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 3.4e-55 219.5 167 66.5
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 5.8e-55 218.8 140 75.7
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 9.3e-53 211.5 141 73.0
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 3.7e-49 199.5 146 67.1
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 6.9e-48 195.3 233 49.4
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.9e-45 187.2 157 58.6
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 3.2e-45 186.4 227 45.4
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 6.2e-41 172.2 170 52.9
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 5.8e-39 165.6 165 53.3
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.3e-38 164.5 155 58.1
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 9.3e-37 158.3 96 77.1
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 1.3e-33 147.9 136 54.4
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 3.4e-31 139.8 224 36.6
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 1.1e-29 134.8 129 54.3
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 1.5e-26 124.4 96 64.6
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 2.9e-22 110.2 246 33.3
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 7.9e-20 102.1 234 31.6
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.0e-19 101.7 117 48.7
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 5.1e-19 99.4 142 45.1
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 2.6e-18 97.1 77 63.6
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 4.1e-16 89.7 90 53.3
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.0e-10 70.9 61 57.4


User provided reference genes

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