Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 1.6e-61 239.2 119 100.0
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 3.8e-26 121.7 72 87.5
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 3.8e-26 121.7 72 87.5
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 8.4e-26 120.6 70 87.1
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 2.5e-25 119.0 73 83.6
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 3.2e-25 118.6 70 88.6
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 4.2e-25 118.2 66 89.4
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 4.2e-25 118.2 70 82.9
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 5.5e-25 117.9 71 80.3
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.7e-24 115.5 70 85.7
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.7e-24 115.5 70 85.7
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 2.7e-24 115.5 70 84.3
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 4.6e-24 114.8 68 80.9
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 4.6e-24 114.8 69 79.7
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 6.1e-24 114.4 69 82.6
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 6.1e-24 114.4 72 80.6
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 6.1e-24 114.4 68 80.9
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 7.9e-24 114.0 70 84.3
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 7.9e-24 114.0 70 84.3
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 1.0e-23 113.6 70 85.7
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 1.3e-23 113.2 70 81.4
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 1.8e-23 112.8 69 81.2
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 2.3e-23 112.5 70 78.6
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 3.9e-23 111.7 70 78.6
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 5.1e-23 111.3 69 79.7
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 5.1e-23 111.3 72 80.6
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 6.7e-23 110.9 68 80.9
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 6.7e-23 110.9 59 89.8
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 8.7e-23 110.5 71 77.5
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 1.1e-22 110.2 68 76.5
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 2.5e-22 109.0 68 77.9
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 2.5e-22 109.0 71 76.1
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 2.5e-22 109.0 70 81.4
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 3.3e-22 108.6 71 76.1
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 3.3e-22 108.6 63 82.5
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 3.3e-22 108.6 63 82.5
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 5.7e-22 107.8 72 77.8
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 9.7e-22 107.1 68 76.5
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 1.3e-21 106.7 68 75.0
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 1.6e-21 106.3 69 78.3
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 1.6e-21 106.3 80 66.2
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 1.6e-21 106.3 68 77.9
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 1.6e-21 106.3 68 77.9
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 1.6e-21 106.3 69 78.3
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 1.6e-21 106.3 68 77.9
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 2.2e-21 105.9 68 80.9
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 2.2e-21 105.9 68 80.9
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 2.2e-21 105.9 68 77.9
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 2.2e-21 105.9 77 72.7
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 2.2e-21 105.9 66 77.3
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 2.2e-21 105.9 71 77.5
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 2.2e-21 105.9 71 77.5
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 2.8e-21 105.5 72 77.8
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 3.7e-21 105.1 65 81.5
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 4.8e-21 104.8 63 79.4
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 4.8e-21 104.8 63 79.4
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 4.8e-21 104.8 70 68.6
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 4.8e-21 104.8 65 75.4
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 4.8e-21 104.8 70 74.3
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 6.3e-21 104.4 68 77.9
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 6.3e-21 104.4 68 77.9
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 8.2e-21 104.0 70 74.3
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 8.2e-21 104.0 71 71.8
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 8.2e-21 104.0 67 74.6
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 8.2e-21 104.0 67 71.6
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 8.2e-21 104.0 70 75.7
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 8.2e-21 104.0 73 68.5
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 1.1e-20 103.6 67 71.6
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.1e-20 103.6 62 75.8
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.1e-20 103.6 70 67.1
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 1.1e-20 103.6 68 73.5
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 1.4e-20 103.2 74 70.3
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 1.8e-20 102.8 68 79.4
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.8e-20 102.8 67 71.6
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.4e-20 102.4 67 70.1
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.4e-20 102.4 67 70.1
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 2.4e-20 102.4 70 72.9
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 2.4e-20 102.4 70 72.9
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 2.4e-20 102.4 70 72.9
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 3.1e-20 102.1 70 72.9
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 4.1e-20 101.7 58 82.8
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 4.1e-20 101.7 58 82.8
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 4.1e-20 101.7 68 72.1
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 5.3e-20 101.3 67 71.6
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 5.3e-20 101.3 67 68.7
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 6.9e-20 100.9 66 71.2
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 9.0e-20 100.5 68 75.0
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 9.0e-20 100.5 70 74.3
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 9.0e-20 100.5 70 74.3
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 9.0e-20 100.5 75 70.7
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 9.0e-20 100.5 75 70.7
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 1.2e-19 100.1 59 78.0
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 1.2e-19 100.1 69 75.4
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 2.0e-19 99.4 58 79.3
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 2.0e-19 99.4 58 79.3
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 2.6e-19 99.0 59 76.3
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 2.6e-19 99.0 70 72.9
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 3.4e-19 98.6 70 68.6
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 3.4e-19 98.6 71 71.8
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 3.4e-19 98.6 67 67.2
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 7.7e-19 97.4 66 71.2
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 1.3e-18 96.7 59 76.3
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 6.5e-18 94.4 59 74.6
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 4.2e-17 91.7 55 81.8
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 7.2e-17 90.9 68 67.6
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 1.2e-16 90.1 50 82.0
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 1.6e-16 89.7 61 70.5
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 2.1e-16 89.4 59 72.9
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 1.8e-15 86.3 58 74.1
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 7.4e-14 80.9 61 72.1
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 1.0e-07 60.5 63 44.4
AagrBONN_evm.TU.Sc2ySwM_362.2137 Anthoceros agrestis HOM05D006672 ORTHO05D007769 9.7e-06 53.9 60 40.0


User provided reference genes

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