Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0005750 Simmondsia chinensis HOM05D001703 ORTHO05D012658 1.5e-25 118.6 57 100.0
Sc12g0008260 Simmondsia chinensis HOM05D001703 ORTHO05D005708 1.1e-23 112.5 54 98.1
MBI07_g35164_MAGBIO Magnolia biondii HOM05D001703 ORTHO05D005708 3.2e-23 110.9 54 96.3
Cc02_g24480 Coffea canephora HOM05D001703 ORTHO05D005708 7.1e-23 109.8 54 94.4
Manes.13G145400 Manihot esculenta HOM05D001703 ORTHO05D005708 7.1e-23 109.8 54 92.6
PSO063G3743 Papaver somniferum HOM05D001703 ORTHO05D005708 7.1e-23 109.8 54 92.6
PSO782G2754 Papaver somniferum HOM05D001703 ORTHO05D005708 7.1e-23 109.8 54 92.6
Sabra01G0095200 Salix brachista HOM05D001703 ORTHO05D005708 7.1e-23 109.8 54 92.6
Solyc01g090690.4 Solanum lycopersicum HOM05D001703 ORTHO05D005708 9.3e-23 109.4 54 92.6
Sopen01g036420 Solanum pennellii HOM05D001703 ORTHO05D005708 9.3e-23 109.4 54 92.6
TWI14G0062 Tripterygium wilfordii HOM05D001703 ORTHO05D005708 9.3e-23 109.4 54 92.6
TWI59G0672 Tripterygium wilfordii HOM05D001703 ORTHO05D005708 9.3e-23 109.4 54 92.6
Actinidia33491 Actinidia chinensis HOM05D001703 ORTHO05D005708 1.2e-22 109.0 54 92.6
GSVIVG01018186001 Vitis vinifera HOM05D001703 ORTHO05D005708 1.2e-22 109.0 54 92.6
Oeu063215.2 Olea europaea HOM05D001703 ORTHO05D005708 1.6e-22 108.6 54 92.6
Glyma.01G075300 Glycine max HOM05D001703 ORTHO05D012658 2.1e-22 108.2 54 90.7
Glyma.11G163201 Glycine max HOM05D001703 ORTHO05D005708 2.1e-22 108.2 54 90.7
Hma1.2p1_1040F.1_g250930 Hydrangea macrophylla HOM05D001703 ORTHO05D005708 2.1e-22 108.2 54 88.9
Hma1.2p1_1098F.1_g256720 Hydrangea macrophylla HOM05D001703 ORTHO05D005708 2.1e-22 108.2 54 88.9
Nitab4.5_0001823g0080 Nicotiana tabacum HOM05D001703 ORTHO05D005708 2.1e-22 108.2 54 90.7
Nitab4.5_0003110g0050 Nicotiana tabacum HOM05D001703 ORTHO05D005708 2.1e-22 108.2 54 90.7
Oeu061508.1 Olea europaea HOM05D001703 ORTHO05D005708 2.1e-22 108.2 54 90.7
Potri.001G123600 Populus trichocarpa HOM05D001703 ORTHO05D005708 2.1e-22 108.2 54 90.7
Actinidia12665 Actinidia chinensis HOM05D001703 ORTHO05D005708 2.7e-22 107.8 54 90.7
arahy.Tifrunner.gnm1.ann1.FL2079 Arachis hypogaea HOM05D001703 ORTHO05D005708 2.7e-22 107.8 54 90.7
arahy.Tifrunner.gnm1.ann1.XEJ3YL Arachis hypogaea HOM05D001703 ORTHO05D005708 2.7e-22 107.8 54 90.7
SGA_v2.0_scaffold153G36946 Striga asiatica HOM05D001703 ORTHO05D005708 2.7e-22 107.8 54 88.9
CSS0006474 Camellia sinensis var. sinensis HOM05D001703 ORTHO05D005708 3.5e-22 107.5 54 90.7
CSS0031871 Camellia sinensis var. sinensis HOM05D001703 ORTHO05D005708 3.5e-22 107.5 54 90.7
Dinv44101 Davidia involucrata HOM05D001703 ORTHO05D005708 3.5e-22 107.5 54 92.6
Lj9C561G12 Lonicera japonica HOM05D001703 ORTHO05D005708 3.5e-22 107.5 54 92.6
Lalb_Chr01g0021531 Lupinus albus HOM05D001703 ORTHO05D005708 3.5e-22 107.5 54 90.7
Potri.003G109900 Populus trichocarpa HOM05D001703 ORTHO05D005708 3.5e-22 107.5 54 90.7
Sed0002552 Sechium edule HOM05D001703 ORTHO05D005708 3.5e-22 107.5 54 90.7
Nn6g33913 Nelumbo nucifera HOM05D001703 ORTHO05D005708 4.6e-22 107.1 54 90.7
Prupe.2G134500 Prunus persica HOM05D001703 ORTHO05D005708 4.6e-22 107.1 54 90.7
SalBow5G4945 Salvia bowleyana HOM05D001703 ORTHO05D005708 4.6e-22 107.1 54 88.9
PGSC0003DMG400026030 Solanum tuberosum HOM05D001703 ORTHO05D005708 4.6e-22 107.1 54 88.9
TPR.G39063 Trifolium pratense HOM05D001703 ORTHO05D005708 4.6e-22 107.1 54 88.9
Atru.chr5.204 Acer truncatum HOM05D001703 ORTHO05D005708 6.0e-22 106.7 54 90.7
Aa31LG1G26610 Aethionema arabicum HOM05D001703 ORTHO05D005708 6.0e-22 106.7 54 90.7
AL4G44120 Arabidopsis lyrata HOM05D001703 ORTHO05D005708 6.0e-22 106.7 54 90.7
EL10Ac8g19417 Beta vulgaris HOM05D001703 ORTHO05D005708 6.0e-22 106.7 54 90.7
CAN.G899.24 Capsicum annuum HOM05D001703 ORTHO05D005708 6.0e-22 106.7 54 88.9
AUR62033018 Chenopodium quinoa HOM05D001703 ORTHO05D005708 6.0e-22 106.7 54 88.9
AUR62034061 Chenopodium quinoa HOM05D001703 ORTHO05D005708 6.0e-22 106.7 54 88.9
Lj1g0021366 Lotus japonicus HOM05D001703 ORTHO05D005708 6.0e-22 106.7 54 87.0
Psat3g157880 Pisum sativum HOM05D001703 ORTHO05D005708 6.0e-22 106.7 54 88.9
PGR004G2547 Punica granatum HOM05D001703 ORTHO05D005708 6.0e-22 106.7 54 90.7
AT1G45332 Arabidopsis thaliana HOM05D001703 ORTHO05D005708 7.9e-22 106.3 54 88.9
AT2G45030 Arabidopsis thaliana HOM05D001703 ORTHO05D005708 7.9e-22 106.3 54 88.9
CiPaw.13G030200 Carya illinoinensis HOM05D001703 ORTHO05D005708 7.9e-22 106.3 54 88.9
Duzib133G0844 Durio zibethinus HOM05D001703 ORTHO05D005708 7.9e-22 106.3 54 88.9
Duzib138G1530 Durio zibethinus HOM05D001703 ORTHO05D005708 7.9e-22 106.3 54 88.9
Gorai.007G087600 Gossypium raimondii HOM05D001703 ORTHO05D005708 7.9e-22 106.3 54 88.9
Peaxi162Scf00377g00725 Petunia axillaris HOM05D001703 ORTHO05D005708 7.9e-22 106.3 54 88.9
Thecc.01G387100 Theobroma cacao HOM05D001703 ORTHO05D005708 7.9e-22 106.3 54 88.9
Ah.05g167390 Amaranthus hybridus HOM05D001703 ORTHO05D005708 1.0e-21 105.9 54 88.9
ATR0564G237 Amborella trichopoda HOM05D001703 ORTHO05D005708 1.0e-21 105.9 54 88.9
Eucgr.D02509 Eucalyptus grandis HOM05D001703 ORTHO05D005708 1.0e-21 105.9 54 88.9
Lalb_Chr03g0039991 Lupinus albus HOM05D001703 ORTHO05D005708 1.0e-21 105.9 54 87.0
THA.LOC104827585 Tarenaya hassleriana HOM05D001703 ORTHO05D005708 1.0e-21 105.9 54 90.7
Cfa011126 Carpinus fangiana HOM05D001703 ORTHO05D005708 1.3e-21 105.5 54 87.0
ClCG06G002530 Citrullus lanatus HOM05D001703 ORTHO05D005708 1.3e-21 105.5 54 88.9
MELO3C022276.2 Cucumis melo HOM05D001703 ORTHO05D005708 1.3e-21 105.5 54 88.9
HanXRQChr04g0123481 Helianthus annuus HOM05D001703 ORTHO05D005708 1.3e-21 105.5 54 87.0
Lsat_1_v5_gn_7_11121 Lactuca sativa HOM05D001703 ORTHO05D005708 1.3e-21 105.5 54 88.9
QL04p035341 Quercus lobata HOM05D001703 ORTHO05D005708 1.3e-21 105.5 54 87.0
Rhsim02G0217200 Rhododendron simsii HOM05D001703 ORTHO05D005708 1.3e-21 105.5 54 88.9
unitig_0.g1321 Utricularia gibba HOM05D001703 ORTHO05D005708 1.3e-21 105.5 54 85.2
Carub.0004s2762 Capsella rubella HOM05D001703 ORTHO05D005708 1.8e-21 105.1 54 87.0
Migut.B01569 Erythranthe guttata HOM05D001703 ORTHO05D005708 1.8e-21 105.1 54 87.0
Gohir.D11G081900 Gossypium hirsutum HOM05D001703 ORTHO05D005708 1.8e-21 105.1 54 87.0
Phvul.008G157300 Phaseolus vulgaris HOM05D001703 ORTHO05D005708 1.8e-21 105.1 54 85.2
BcaC02g12268 Brassica carinata HOM05D001703 ORTHO05D005708 2.3e-21 104.8 54 87.0
A05p05120 Brassica napus HOM05D001703 ORTHO05D005708 2.3e-21 104.8 54 87.0
C04p05970 Brassica napus HOM05D001703 ORTHO05D005708 2.3e-21 104.8 54 87.0
BolC4t22228H Brassica oleracea HOM05D001703 ORTHO05D005708 2.3e-21 104.8 54 87.0
BraA05t19486Z Brassica rapa HOM05D001703 ORTHO05D005708 2.3e-21 104.8 54 87.0
CDE08G0912 Ceratophyllum demersum HOM05D001703 ORTHO05D012658 2.3e-21 104.8 54 88.9
CsaV3_6G008600 Cucumis sativus L. HOM05D001703 ORTHO05D005708 2.3e-21 104.8 54 88.9
DCAR_031877 Daucus carota HOM05D001703 ORTHO05D005708 2.3e-21 104.8 54 88.9
MD07G1111000 Malus domestica HOM05D001703 ORTHO05D005708 2.3e-21 104.8 54 85.2
VMungo1383G1201 Vigna mungo HOM05D001703 ORTHO05D005708 2.3e-21 104.8 54 87.0
Ca_07392_v3 Cicer arietinum L. HOM05D001703 ORTHO05D005708 3.0e-21 104.4 54 85.2
Ciclev10018974m.g Citrus clementina HOM05D001703 ORTHO05D005708 3.0e-21 104.4 54 88.9
Haze_02737 Corylus avellana HOM05D001703 ORTHO05D005708 3.0e-21 104.4 54 85.2
ECA236G3770 Erigeron canadensis HOM05D001703 ORTHO05D005708 3.0e-21 104.4 54 87.0
TAR375G0518 Trochodendron aralioides HOM05D001703 ORTHO05D005708 3.0e-21 104.4 54 88.9
CARHR140280 Cardamine hirsuta HOM05D001703 ORTHO05D005708 3.9e-21 104.0 54 87.0
Thhalv10001325m.g Eutrema salsugineum HOM05D001703 ORTHO05D005708 3.9e-21 104.0 54 87.0
Aqoxy5G03848 Aquilegia oxysepala HOM05D001703 ORTHO05D005708 5.1e-21 103.6 54 87.0
Gohir.A07G147800 Gossypium hirsutum HOM05D001703 ORTHO05D005708 5.1e-21 103.6 54 85.2
Gohir.D07G154000 Gossypium hirsutum HOM05D001703 ORTHO05D005708 5.1e-21 103.6 54 85.2
Gorai.001G176200 Gossypium raimondii HOM05D001703 ORTHO05D005708 5.1e-21 103.6 54 85.2
Sp4g27090 Schrenkiella parvula HOM05D001703 ORTHO05D005708 5.1e-21 103.6 54 85.2
Medtr7g044770 Medicago truncatula HOM05D001703 ORTHO05D005708 6.7e-21 103.2 54 83.3
Os03g0565500 Oryza sativa ssp. japonica HOM05D001703 ORTHO05D005708 6.7e-21 103.2 54 83.3
Zm00001eb064310 Zea mays HOM05D001703 ORTHO05D005708 6.7e-21 103.2 54 83.3
COL.COLO4_12454 Corchorus olitorius HOM05D001703 ORTHO05D005708 1.1e-20 102.4 54 85.2
FvH4_7g10500 Fragaria vesca HOM05D001703 ORTHO05D005708 3.3e-20 100.9 54 79.6
FAN01G2709 Fragaria x ananassa HOM05D001703 ORTHO05D005708 3.3e-20 100.9 54 79.6
FAN06G1838 Fragaria x ananassa HOM05D001703 ORTHO05D005708 3.3e-20 100.9 54 79.6
FAN06G3291 Fragaria x ananassa HOM05D001703 ORTHO05D005708 3.3e-20 100.9 54 79.6
FAN10G2068 Fragaria x ananassa HOM05D001703 ORTHO05D005708 3.3e-20 100.9 54 79.6
FAN10G3449 Fragaria x ananassa HOM05D001703 ORTHO05D005708 3.3e-20 100.9 54 79.6
Psat3g052960 Pisum sativum HOM05D001703 ORTHO05D005708 3.3e-20 100.9 54 81.5
RcHm_v2.0_Chr1g0348291 Rosa chinensis HOM05D001703 ORTHO05D005708 3.3e-20 100.9 54 79.6
VMungo0647G0991 Vigna mungo HOM05D001703 ORTHO05D012658 3.3e-20 100.9 54 81.5
Psat2g188480 Pisum sativum HOM05D001703 ORTHO05D012658 2.8e-19 97.8 54 83.3
Medtr2g020660 Medicago truncatula HOM05D001703 ORTHO05D005708 6.3e-19 96.7 54 77.8
vmacro13467 Vaccinium macrocarpon HOM05D001703 ORTHO05D005708 3.4e-17 90.9 75 62.7
SEGI_18917 Sequoiadendron giganteum HOM05D001703 ORTHO05D005708 4.5e-17 90.5 54 75.9
Medtr2g028300 Medicago truncatula HOM05D001703 ORTHO05D012658 5.9e-17 90.1 54 72.2
Medtr2g066890 Medicago truncatula HOM05D001703 ORTHO05D012658 2.9e-16 87.8 54 70.4
Medtr2g067190 Medicago truncatula HOM05D001703 ORTHO05D012658 2.9e-16 87.8 54 70.4
Medtr2g067200 Medicago truncatula HOM05D001703 ORTHO05D012658 2.9e-16 87.8 54 70.4
Pp3c19_15980 Physcomitrium patens HOM05D001703 ORTHO05D005708 3.8e-16 87.4 54 72.2
Pp3c22_17180 Physcomitrium patens HOM05D001703 ORTHO05D005708 3.8e-16 87.4 54 72.2
Medtr2g028440 Medicago truncatula HOM05D001703 ORTHO05D012658 5.0e-16 87.0 54 68.5
SMO361G0314 Selaginella moellendorffii HOM05D001703 ORTHO05D005708 5.0e-16 87.0 54 70.4
Medtr2g029120 Medicago truncatula HOM05D001703 ORTHO05D012658 6.5e-16 86.7 54 68.5
AagrBONN_evm.TU.Sc2ySwM_340.168 Anthoceros agrestis HOM05D001703 ORTHO05D005708 1.4e-15 85.5 54 66.7
Medtr2g029125 Medicago truncatula HOM05D001703 ORTHO05D012658 5.5e-15 83.6 54 66.7
TPR.G18025 Trifolium pratense HOM05D001703 ORTHO05D005708 5.5e-15 83.6 90 48.9
Mapoly0029s0132 Marchantia polymorpha HOM05D001703 ORTHO05D005708 2.7e-14 81.3 54 68.5
PRCOL_00004175 Prasinoderma coloniale HOM05D001703 ORTHO05D005708 3.6e-14 80.9 54 66.7
Medtr2g028400 Medicago truncatula HOM05D001703 ORTHO05D012658 4.6e-14 80.5 54 64.8
Hund12552 Selenicereus undatus HOM05D001703 ORTHO05D005708 6.1e-14 80.1 121 42.1
Medtr2g028350 Medicago truncatula HOM05D001703 ORTHO05D012658 7.9e-14 79.7 54 68.5
Medtr2g028340 Medicago truncatula HOM05D001703 ORTHO05D012658 1.4e-13 79.0 54 64.8
TPR.G26360 Trifolium pratense HOM05D001703 ORTHO05D012658 1.8e-13 78.6 54 63.0
Medtr2g028360 Medicago truncatula HOM05D001703 ORTHO05D259708 3.9e-13 77.4 54 61.1
Medtr2g028380 Medicago truncatula HOM05D001703 ORTHO05D012658 2.5e-12 74.7 54 61.1
MCO11G478 Micromonas commoda HOM05D001703 ORTHO05D005708 2.5e-12 74.7 54 59.3
Cre11.g467553 Chlamydomonas reinhardtii HOM05D001703 ORTHO05D005708 3.3e-12 74.3 54 59.3
TPR.G10490 Trifolium pratense HOM05D001703 ORTHO05D012658 3.3e-12 74.3 56 62.5
Gohir.A11G077500 Gossypium hirsutum HOM05D001703 ORTHO05D005708 4.8e-11 70.5 37 81.1
Cfa026916 Carpinus fangiana HOM05D001703 ORTHO05D005708 6.3e-11 70.1 54 53.7
Medtr6g023380 Medicago truncatula HOM05D001703 ORTHO05D020871 1.5e-09 65.5 54 50.0
Sabra03G0076100 Salix brachista HOM05D001703 ORTHO05D005708 1.0e-08 62.8 29 96.6
TPR.G29446 Trifolium pratense HOM05D000683 ORTHO05D000507 1.9e-07 58.5 55 52.7
Medtr8g105090 Medicago truncatula HOM05D001703 ORTHO05D020871 3.2e-07 57.8 54 44.4
Medtr3g014380 Medicago truncatula HOM05D001703 ORTHO05D020871 4.2e-07 57.4 49 49.0
Medtr4g051702 Medicago truncatula HOM05D001703 ORTHO05D020871 7.2e-07 56.6 54 44.4
Cre02.g076250 Chlamydomonas reinhardtii HOM05D001703 ORTHO05D007194 1.6e-06 55.5 52 40.4
Cc08_g13050 Coffea canephora HOM05D001703 ORTHO05D007194 2.7e-06 54.7 52 42.3
Haze_27063 Corylus avellana HOM05D001703 ORTHO05D002596 4.7e-06 53.9 52 38.5
Rhsim07G0103700 Rhododendron simsii HOM05D001703 ORTHO05D007194 4.7e-06 53.9 52 44.2
TAR374G0319 Trochodendron aralioides HOM05D001703 ORTHO05D007194 4.7e-06 53.9 52 40.4
Zm00001eb075420 Zea mays HOM05D001703 ORTHO05D007194 4.7e-06 53.9 52 44.2
Zm00001eb427510 Zea mays HOM05D001703 ORTHO05D007194 4.7e-06 53.9 52 44.2
Lj2C210G10 Lonicera japonica HOM05D001703 ORTHO05D007194 6.1e-06 53.5 52 44.2
Nitab4.5_0003983g0050 Nicotiana tabacum HOM05D001703 ORTHO05D007194 6.1e-06 53.5 52 42.3
Nitab4.5_0008547g0010 Nicotiana tabacum HOM05D001703 ORTHO05D007194 6.1e-06 53.5 52 42.3
TPR.G40420 Trifolium pratense HOM05D001703 ORTHO05D012658 6.1e-06 53.5 33 69.7
CBR_g40470 Chara braunii HOM05D001703 ORTHO05D007194 7.9e-06 53.1 52 38.5
Sabra03G0078700 Salix brachista HOM05D001703 ORTHO05D007194 7.9e-06 53.1 52 42.3


User provided reference genes

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