Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0005710 Simmondsia chinensis HOM05D006933 ORTHO05D009629 8.9e-251 869.8 430 100.0
Sc23g0004170 Simmondsia chinensis HOM05D006933 ORTHO05D009629 8.0e-135 484.6 407 64.6
Sc18g0002450 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.1e-95 353.6 406 46.3
Sc06g0004220 Simmondsia chinensis HOM05D006933 ORTHO05D009629 3.4e-85 319.7 415 45.8
Sc21g0005420 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.5e-85 319.3 259 64.5
Sc16g0003440 Simmondsia chinensis HOM05D006933 ORTHO05D009629 5.7e-80 302.4 313 50.2
Sc02g0004050 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.6e-77 293.5 238 63.4
Sc19g0006300 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.1e-70 271.6 402 40.3
Sc26g0001380 Simmondsia chinensis HOM05D006933 ORTHO05D009629 6.1e-66 255.8 267 49.1
Sc01g0006920 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.8e-63 246.1 186 66.7
Sc04g0003720 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.4e-62 243.8 259 53.3
Sc10g0006330 Simmondsia chinensis HOM05D006933 ORTHO05D009629 9.1e-62 241.9 256 48.8
Sc24g0000790 Simmondsia chinensis HOM05D006933 ORTHO05D009629 7.7e-61 238.8 400 37.8
Sc11g0005090 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.7e-58 230.3 303 42.2
Sc08g0005340 Simmondsia chinensis HOM05D006933 ORTHO05D009629 8.0e-58 228.8 198 55.6
Sc10g0006470 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.1e-56 224.9 190 54.7
Sc01g0005690 Simmondsia chinensis HOM05D006933 ORTHO05D009629 5.7e-56 222.6 244 48.4
Sc13g0006150 Simmondsia chinensis HOM05D006933 ORTHO05D009629 5.7e-56 222.6 202 52.0
Sc12g0008540 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.3e-55 221.5 208 52.9
Sc03g0004560 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.1e-54 216.5 171 59.1
Sc20g0004170 Simmondsia chinensis HOM05D006933 ORTHO05D009629 5.9e-53 212.6 253 49.4
Sc07g0006510 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.2e-52 210.7 338 40.2
Sc26g0002220 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.9e-51 207.6 310 43.2
Sc11g0004570 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.2e-50 204.9 239 47.7
Sc06g0004410 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.7e-50 203.8 154 61.7
Sc12g0007420 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.7e-47 194.5 159 50.9
Sc20g0003570 Simmondsia chinensis HOM05D006933 ORTHO05D009629 6.3e-47 192.6 285 38.9
Sc17g0002170 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.6e-45 188.0 275 41.1
Sc20g0003680 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.0e-44 185.3 212 45.8
Sc18g0006260 Simmondsia chinensis HOM05D006933 ORTHO05D009629 6.5e-44 182.6 193 49.7
Sc04g0003670 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.1e-42 177.6 172 57.6
Sc25g0003910 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.2e-40 171.8 337 34.1
Sc19g0006270 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.6e-40 170.6 239 41.4
Sc26g0002540 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.1e-38 165.2 161 50.3
Sc10g0007390 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.7e-37 160.6 136 57.4
Sc20g0003530 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.6e-34 151.4 168 46.4
Sc13g0005400 Simmondsia chinensis HOM05D006933 ORTHO05D009629 6.1e-34 149.4 195 42.1
Sc23g0004060 Simmondsia chinensis HOM05D006933 ORTHO05D009629 8.0e-34 149.1 109 59.6
Sc08g0005990 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.9e-31 139.8 216 37.5
Sc09g0006400 Simmondsia chinensis HOM05D006933 ORTHO05D009629 7.8e-29 132.5 212 36.8
Sc03g0007280 Simmondsia chinensis HOM05D006933 ORTHO05D009629 8.6e-28 129.0 97 59.8
Sc07g0005650 Simmondsia chinensis HOM05D013278 ORTHO05D009629 3.3e-27 127.1 182 41.8
Sc17g0003640 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.0e-25 122.1 203 34.5
Sc09g0005800 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.5e-24 118.2 99 53.5
Sc18g0005120 Simmondsia chinensis HOM05D006933 ORTHO05D009629 3.4e-24 117.1 196 35.7
Sc06g0004260 Simmondsia chinensis HOM05D006933 ORTHO05D009629 9.2e-22 109.0 313 28.1
Sc25g0001670 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.0e-21 107.8 103 58.3
Sc03g0007270 Simmondsia chinensis HOM05D006933 ORTHO05D009629 5.0e-20 103.2 161 41.6
Lj5g0003699 Lotus japonicus HOM05D008220 ORTHO05D010358 8.6e-20 102.4 411 23.6
Sc20g0002870 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.3e-19 100.1 107 53.3
Lj6g0001845 Lotus japonicus HOM05D008220 ORTHO05D010358 1.1e-17 95.5 295 28.1
Sc06g0006000 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.3e-17 94.4 89 51.7
Rhsim13G0125400 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.9e-17 92.4 367 23.7
Sc02g0003510 Simmondsia chinensis HOM05D009348 ORTHO05D010856 8.9e-17 92.4 304 27.3
Sc04g0003750 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.0e-16 91.3 82 53.7
Sc16g0006020 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.0e-16 91.3 361 26.9
Sc26g0003190 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.4e-16 90.1 114 46.5
Sc10g0006460 Simmondsia chinensis HOM05D006933 ORTHO05D009629 5.8e-16 89.7 105 46.7
Sc23g0003820 Simmondsia chinensis HOM05D006933 ORTHO05D009629 9.8e-16 89.0 93 51.6
Ah.08g219520 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.3e-15 88.6 367 24.0
Sc16g0005360 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.7e-15 88.2 117 44.4
Ah.01g013230 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.9e-15 87.4 308 23.4
Ah.03g145270 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.9e-15 87.4 321 24.3
Lj3g0019996 Lotus japonicus HOM05D008220 ORTHO05D010358 3.7e-15 87.0 326 24.5
Sc09g0007560 Simmondsia chinensis HOM05D006933 ORTHO05D009629 3.7e-15 87.0 130 40.8
Sc13g0006290 Simmondsia chinensis HOM05D006933 ORTHO05D009629 3.7e-15 87.0 59 66.1
Lj1g0024049 Lotus japonicus HOM05D008220 ORTHO05D010358 6.4e-15 86.3 303 23.8
Sc11g0005100 Simmondsia chinensis HOM05D006933 ORTHO05D009629 6.4e-15 86.3 99 51.5
Sc22g0003620 Simmondsia chinensis HOM05D006933 ORTHO05D009629 8.3e-15 85.9 71 62.0
Sc23g0004070 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.1e-14 85.5 105 46.7
Lj4g0013144 Lotus japonicus HOM05D008220 ORTHO05D010358 2.4e-14 84.3 305 22.0
Ah.02g118210 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.2e-14 84.0 325 25.8
Lj1g0026317 Lotus japonicus HOM05D008220 ORTHO05D010358 3.2e-14 84.0 288 24.7
vmacro21928 Vaccinium macrocarpon HOM05D000086 ORTHO05D000431 4.1e-14 83.6 299 24.7
Actinidia12169 Actinidia chinensis HOM05D012898 ORTHO05D009356 5.4e-14 83.2 316 23.7
Sc02g0006620 Simmondsia chinensis HOM05D006933 ORTHO05D009629 5.4e-14 83.2 61 62.3
Sc20g0003540 Simmondsia chinensis HOM05D006933 ORTHO05D009629 5.4e-14 83.2 110 45.5
LjContig00583g0009142 Lotus japonicus HOM05D008220 ORTHO05D010358 7.1e-14 82.8 342 24.0
Sc05g0005650 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.2e-13 82.0 81 53.1
Sc09g0006390 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.2e-13 82.0 96 50.0
Ah.13g066110 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.6e-13 81.6 326 23.6
Sc21g0001740 Simmondsia chinensis HOM05D011136 ORTHO05D010856 2.7e-13 80.9 305 24.3
Sc01g0002780 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.6e-13 80.1 84 51.2
Lj1g0011459 Lotus japonicus HOM05D008220 ORTHO05D010358 6.0e-13 79.7 275 24.7
Sc23g0004620 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.0e-12 79.0 74 52.7
Lj4g0014288 Lotus japonicus HOM05D008220 ORTHO05D010358 1.3e-12 78.6 280 22.1
Lj6g0019563 Lotus japonicus HOM05D008220 ORTHO05D010358 1.7e-12 78.2 280 26.4
LjContig00127g0011774 Lotus japonicus HOM05D008220 ORTHO05D010358 2.3e-12 77.8 280 22.5
Lj2g0017871 Lotus japonicus HOM05D008220 ORTHO05D010358 3.0e-12 77.4 327 23.5
LjContig00357g0008125 Lotus japonicus HOM05D008220 ORTHO05D010358 3.0e-12 77.4 365 21.9
Lj3g0027860 Lotus japonicus HOM05D008220 ORTHO05D010358 6.6e-12 76.3 280 22.1
Lj1g0018935 Lotus japonicus HOM05D008220 ORTHO05D010358 2.5e-11 74.3 303 23.1
LjContig00141g0011294 Lotus japonicus HOM05D008220 ORTHO05D010358 2.5e-11 74.3 367 23.7
Sc12g0009480 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.5e-11 74.3 87 52.9
Phvul.006G023800 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.2e-10 72.0 318 22.6
Lsat_1_v5_gn_5_131521 Lactuca sativa HOM05D003915 ORTHO05D001516 2.1e-10 71.2 350 24.0
vmacro21908 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 2.1e-10 71.2 298 24.2
Lj3g0023441 Lotus japonicus HOM05D008220 ORTHO05D010358 2.8e-10 70.9 291 21.3
Sc12g0005980 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.7e-10 70.1 62 58.1
Sc14g0002620 Simmondsia chinensis HOM05D009209 ORTHO05D011705 8.1e-10 69.3 243 23.0
Lj3g0021978 Lotus japonicus HOM05D002777 ORTHO05D001516 1.1e-09 68.9 310 21.9
Phvul.008G144313 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.1e-09 68.9 297 22.6
Lj1g0011765 Lotus japonicus HOM05D008220 ORTHO05D010358 1.4e-09 68.6 290 22.4
Rhsim05G0113800 Rhododendron simsii HOM05D010265 ORTHO05D009356 1.4e-09 68.6 140 31.4
RhsimUnG0101100 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.4e-09 68.6 398 21.4
TPR.G19363 Trifolium pratense HOM05D002777 ORTHO05D001516 1.4e-09 68.6 333 20.1
Sc07g0002530 Simmondsia chinensis HOM05D011136 ORTHO05D010856 1.8e-09 68.2 80 37.5
Phvul.L005801 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.3e-09 67.8 317 21.5
Rhsim02G0045800 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.3e-09 67.8 328 21.3
Sc22g0001820 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.3e-09 67.8 284 25.7
Lj5g0005201 Lotus japonicus HOM05D008220 ORTHO05D010358 3.1e-09 67.4 282 21.6
Sc12g0008830 Simmondsia chinensis HOM05D006933 ORTHO05D009629 3.1e-09 67.4 69 52.2
RhsimUnG0239600 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.2e-09 66.6 221 25.3
Ah.06g186480 Amaranthus hybridus HOM05D008762 ORTHO05D011252 8.9e-09 65.9 310 24.2
Gohir.A10G205900 Gossypium hirsutum HOM05D000003 ORTHO05D000006 8.9e-09 65.9 330 22.7
Sc03g0004450 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.2e-08 65.5 161 21.7
Sc10g0009390 Simmondsia chinensis HOM05D011136 ORTHO05D010856 1.2e-08 65.5 178 26.4
Phvul.009G005600 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.5e-08 65.1 280 21.4
Rhsim07G0230400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.5e-08 65.1 337 22.3
Sc11g0005990 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.5e-08 65.1 109 36.7
Ah.14g081710 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.6e-08 64.3 99 35.4
COL.COLO4_16499 Corchorus olitorius HOM05D008263 ORTHO05D009583 4.4e-08 63.5 333 23.4
Lj1g0017334 Lotus japonicus HOM05D008220 ORTHO05D010358 7.6e-08 62.8 291 21.0
DCAR_004018 Daucus carota HOM05D004122 ORTHO05D004468 9.9e-08 62.4 307 22.8
Lj1g0012808 Lotus japonicus HOM05D008220 ORTHO05D010358 9.9e-08 62.4 72 38.9
Ah.16g108500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.7e-07 61.6 83 41.0
Lj2g0000568 Lotus japonicus HOM05D002777 ORTHO05D001516 1.7e-07 61.6 318 20.8
Rhsim11G0140400 Rhododendron simsii HOM05D000026 ORTHO05D009356 1.7e-07 61.6 218 23.9
MBI04_g06618_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 2.2e-07 61.2 286 21.7
Lj5g0027109 Lotus japonicus HOM05D002777 ORTHO05D001516 2.9e-07 60.8 149 26.2
Sc17g0002240 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.9e-07 60.8 102 32.4
vmacro11925 Vaccinium macrocarpon HOM05D000203 ORTHO05D009356 2.9e-07 60.8 160 28.8
vmacro21269 Vaccinium macrocarpon HOM05D005003 ORTHO05D006220 2.9e-07 60.8 152 25.0
Ah.11g045590 Amaranthus hybridus HOM05D000851 ORTHO05D003960 3.7e-07 60.5 92 37.0
Rhsim01G0047800 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.7e-07 60.5 110 28.2
Sc25g0000230 Simmondsia chinensis HOM05D011136 ORTHO05D010856 3.7e-07 60.5 206 25.2
vmacro01896 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 3.7e-07 60.5 278 22.7
Medtr1148s0010 Medicago truncatula HOM05D008558 ORTHO05D001516 4.9e-07 60.1 309 22.7
Lj1g0010280 Lotus japonicus HOM05D008220 ORTHO05D010358 6.4e-07 59.7 296 20.6
Medtr5g065250 Medicago truncatula HOM05D002777 ORTHO05D001516 6.4e-07 59.7 307 21.2
Sc21g0004040 Simmondsia chinensis HOM05D009209 ORTHO05D011705 6.4e-07 59.7 140 22.1
Ah.07g201540 Amaranthus hybridus HOM05D008762 ORTHO05D011252 8.4e-07 59.3 102 36.3
Lj5g0002610 Lotus japonicus HOM05D008220 ORTHO05D010358 8.4e-07 59.3 279 22.9
Rhsim04G0141400 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.4e-07 59.3 218 23.4
Lj6g0021963 Lotus japonicus HOM05D002777 ORTHO05D001516 1.1e-06 58.9 287 23.3
Rhsim04G0090900 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.1e-06 58.9 182 23.1
Sc20g0002080 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.1e-06 58.9 72 44.4
Actinidia04023 Actinidia chinensis HOM05D012898 ORTHO05D011057 1.4e-06 58.5 75 37.3
Actinidia34556 Actinidia chinensis HOM05D008219 ORTHO05D009356 1.4e-06 58.5 317 21.1
Ah.15g100500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.4e-06 58.5 94 36.2
Lj6g0014297 Lotus japonicus HOM05D008220 ORTHO05D010358 1.4e-06 58.5 270 18.9
Phvul.001G088300 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.4e-06 58.5 264 22.3
Ah.07g196620 Amaranthus hybridus HOM05D008762 ORTHO05D031041 1.9e-06 58.2 81 38.3
COL.COLO4_38463 Corchorus olitorius HOM05D008263 ORTHO05D009583 1.9e-06 58.2 334 22.5
Lj4g0007213 Lotus japonicus HOM05D002777 ORTHO05D001516 1.9e-06 58.2 349 20.6
LjContig00357g0023212 Lotus japonicus HOM05D002777 ORTHO05D001516 1.9e-06 58.2 319 20.1
Sc06g0001740 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.9e-06 58.2 206 24.8
Sc07g0006130 Simmondsia chinensis HOM05D009209 ORTHO05D009629 1.9e-06 58.2 94 37.2
Lj4g0023050 Lotus japonicus HOM05D008220 ORTHO05D010358 2.4e-06 57.8 103 29.1
Atru.chr3.2350 Acer truncatum HOM05D016018 ORTHO05D017146 3.2e-06 57.4 315 21.0
Rhsim01G0053100 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.2e-06 57.4 108 27.8
Ah.11g041130 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.1e-06 57.0 340 19.4
DCAR_027640 Daucus carota HOM05D004122 ORTHO05D004468 4.1e-06 57.0 298 22.5
DCAR_027728 Daucus carota HOM05D004122 ORTHO05D004468 4.1e-06 57.0 298 22.5
Medtr2g103400 Medicago truncatula HOM05D002777 ORTHO05D001516 4.1e-06 57.0 77 32.5
unitig_578.g16539 Utricularia gibba HOM05D000428 ORTHO05D000582 4.1e-06 57.0 86 34.9
vmacro12740 Vaccinium macrocarpon HOM05D000625 ORTHO05D000467 4.1e-06 57.0 74 36.5
CSS0042161 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 5.4e-06 56.6 92 33.7
Lj3g0011764 Lotus japonicus HOM05D002777 ORTHO05D001516 5.4e-06 56.6 273 19.4
Sc11g0007570 Simmondsia chinensis HOM05D000027 ORTHO05D000500 5.4e-06 56.6 77 36.4
Lj2g0023598 Lotus japonicus HOM05D008220 ORTHO05D010358 7.1e-06 56.2 81 37.0
SMO116G0283 Selaginella moellendorffii HOM05D001722 ORTHO05D001910 7.1e-06 56.2 82 40.2
Sc19g0004470 Simmondsia chinensis HOM05D011136 ORTHO05D010856 7.1e-06 56.2 102 31.4
CSS0000615 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 9.2e-06 55.8 55 43.6
Glyma.13G027700 Glycine max HOM05D002777 ORTHO05D001516 9.2e-06 55.8 318 20.4


User provided reference genes

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