Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 2.3e-159 565.5 281 100.0
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 3.4e-110 402.1 273 71.8
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 8.5e-109 397.5 280 70.7
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 1.1e-108 397.1 276 71.7
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 1.9e-108 396.4 287 70.0
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 4.2e-108 395.2 287 70.4
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 7.2e-108 394.4 275 70.5
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 1.6e-107 393.3 274 70.8
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 4.6e-107 391.7 277 70.0
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 6.1e-107 391.3 268 71.3
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 6.1e-107 391.3 295 66.1
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 7.9e-107 391.0 274 71.9
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 5.1e-106 388.3 279 68.5
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 1.1e-105 387.1 275 70.5
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 1.9e-105 386.3 276 70.7
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 1.9e-105 386.3 272 71.0
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 1.9e-105 386.3 272 71.0
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 2.5e-105 386.0 285 68.8
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 2.5e-105 386.0 279 69.5
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 4.3e-105 385.2 328 61.6
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 4.3e-105 385.2 273 68.9
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 5.7e-105 384.8 283 70.0
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 7.4e-105 384.4 276 69.6
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 9.7e-105 384.0 276 69.6
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 2.2e-104 382.9 271 70.8
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 3.7e-104 382.1 273 71.1
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 6.3e-104 381.3 272 68.0
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 8.2e-104 380.9 276 68.8
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 2.4e-103 379.4 277 68.6
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 2.4e-103 379.4 278 68.7
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 1.2e-102 377.1 291 67.4
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 1.5e-102 376.7 275 69.5
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 1.5e-102 376.7 275 68.7
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 2.6e-102 375.9 271 67.5
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 4.5e-102 375.2 277 67.9
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 1.7e-101 373.2 274 66.8
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 2.9e-101 372.5 274 68.2
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 5.0e-101 371.7 278 68.0
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 1.1e-100 370.5 283 64.3
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 1.9e-100 369.8 277 67.5
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 3.6e-99 365.5 275 66.9
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 6.1e-99 364.8 277 62.8
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 7.9e-99 364.4 320 58.1
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 1.0e-98 364.0 320 57.8
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 1.4e-98 363.6 282 67.4
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 1.8e-98 363.2 276 65.2
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 2.3e-98 362.8 273 67.0
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 2.3e-98 362.8 271 67.2
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 1.1e-97 360.5 277 67.1
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 7.4e-97 357.8 277 63.5
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 1.7e-96 356.7 307 60.9
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 8.2e-96 354.4 276 66.7
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 8.2e-96 354.4 280 62.1
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 1.4e-95 353.6 276 64.9
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 5.3e-95 351.7 259 66.4
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 6.9e-95 351.3 282 63.8
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 1.2e-94 350.5 293 61.8
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 1.5e-94 350.1 276 64.1
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 2.0e-94 349.7 282 63.5
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 2.6e-94 349.4 271 66.1
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 7.7e-94 347.8 277 62.1
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 1.7e-93 346.7 272 62.1
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 2.2e-93 346.3 276 64.1
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 3.8e-93 345.5 270 64.4
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 1.4e-92 343.6 277 61.0
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 1.6e-91 340.1 287 58.9
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 1.8e-90 336.7 291 58.4
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 7.4e-89 331.3 274 63.9
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 7.4e-89 331.3 287 59.6
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 7.4e-89 331.3 287 59.6
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 1.3e-88 330.5 279 60.2
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 1.7e-88 330.1 279 59.9
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 1.1e-87 327.4 279 59.5
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 4.1e-87 325.5 272 62.1
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 7.0e-87 324.7 217 72.8
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 9.1e-87 324.3 236 69.9
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 1.6e-86 323.6 251 63.7
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 2.6e-86 322.8 210 73.8
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 8.5e-85 317.8 243 64.2
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 6.1e-83 311.6 277 57.8
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 8.0e-83 311.2 230 66.1
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 1.4e-82 310.5 273 60.4
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 8.8e-82 307.8 209 70.3
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 9.7e-81 304.3 209 67.5
Phvul.003G197000 Phaseolus vulgaris HOM05D006519 ORTHO05D008306 3.8e-77 292.4 197 71.6
Lj9C454G3 Lonicera japonica HOM05D006519 ORTHO05D008306 4.7e-75 285.4 275 56.0
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 1.4e-74 283.9 232 59.5
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 2.3e-74 283.1 243 57.6
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 3.1e-71 272.7 234 56.0
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 8.6e-69 264.6 227 55.9
Manes.06G100700 Manihot esculenta HOM05D006519 ORTHO05D008306 7.5e-65 251.5 193 63.7
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 5.4e-63 245.4 183 65.6
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 4.5e-62 242.3 149 77.9
MD14G1186100 Malus domestica HOM05D006519 ORTHO05D008306 3.3e-60 236.1 222 56.8
MD14G1186900 Malus domestica HOM05D006519 ORTHO05D008306 8.9e-58 228.0 168 69.0
MD13G1183500 Malus domestica HOM05D006519 ORTHO05D008306 6.0e-54 215.3 170 65.3
Hma1.2p1_0002F.1_g002800 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 8.6e-53 211.5 166 65.7
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 2.5e-52 209.9 212 55.2
Nitab4.5_0001642g0020 Nicotiana tabacum HOM05D006519 ORTHO05D008306 8.0e-51 204.9 133 73.7
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 1.3e-48 197.6 190 54.2
Cre09.g394584 Chlamydomonas reinhardtii HOM05D006519 ORTHO05D008306 1.6e-46 190.7 305 39.7
HPP92_010835 Vanilla planifolia HOM05D006519 ORTHO05D008306 3.9e-45 186.0 160 58.8
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 1.8e-42 177.2 237 44.7
Actinidia19081 Actinidia chinensis HOM05D006519 ORTHO05D008306 2.7e-38 163.3 141 57.4
SEGI_15669 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 2.3e-37 160.2 151 53.0
Cpa.g.sc35.56 Carica papaya HOM05D006519 ORTHO05D008306 5.1e-37 159.1 116 68.1
Glyma.17G093302 Glycine max HOM05D006519 ORTHO05D008306 5.6e-36 155.6 101 73.3
Nitab4.5_0001642g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 5.8e-33 145.6 133 59.4
arahy.Tifrunner.gnm1.ann1.KZGX7R Arachis hypogaea HOM05D006519 ORTHO05D008306 1.0e-29 134.8 104 59.6
Os06g0239000 Oryza sativa ssp. japonica HOM05D006519 ORTHO05D008306 1.3e-29 134.4 101 67.3
HanXRQChr11g0328331 Helianthus annuus HOM05D006519 ORTHO05D008306 8.7e-29 131.7 101 63.4
C05p16930 Brassica napus HOM05D006519 ORTHO05D008306 8.1e-27 125.2 98 62.2
CDE06G0478 Ceratophyllum demersum HOM05D006519 ORTHO05D008306 1.4e-26 124.4 83 68.7
arahy.Tifrunner.gnm1.ann1.J4WABN Arachis hypogaea HOM05D006519 ORTHO05D008306 1.8e-26 124.0 97 55.7
Dinv20697 Davidia involucrata HOM05D006519 ORTHO05D008306 1.1e-23 114.8 122 54.1
arahy.Tifrunner.gnm1.ann1.9L22J7 Arachis hypogaea HOM05D006519 ORTHO05D014446 7.1e-23 112.1 103 53.4
PRCOL_00000545 Prasinoderma coloniale HOM05D006519 ORTHO05D008306 1.6e-19 100.9 233 31.3
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 9.0e-18 95.1 95 51.6
BcaC05g25762 Brassica carinata HOM05D006519 ORTHO05D008306 2.6e-17 93.6 79 60.8
arahy.Tifrunner.gnm1.ann1.RNN7F2 Arachis hypogaea HOM05D006519 ORTHO05D008306 7.1e-15 85.5 83 53.0
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 6.0e-14 82.4 95 45.3
CBR_g30328 Chara braunii HOM05D000019 ORTHO05D000048 7.9e-14 82.0 96 49.0
SEGI_16810 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 1.0e-13 81.6 50 70.0
arahy.Tifrunner.gnm1.ann1.PY279F Arachis hypogaea HOM05D006519 ORTHO05D008306 2.3e-13 80.5 65 61.5
Potri.015G071001 Populus trichocarpa HOM05D006519 ORTHO05D008306 9.6e-12 75.1 54 68.5


User provided reference genes

Program Settings