Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 7.1e-127 457.2 223 100.0
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 5.7e-84 314.7 226 70.8
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 6.5e-80 301.2 229 68.6
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 9.4e-79 297.4 210 73.3
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 1.6e-78 296.6 224 67.9
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 2.3e-77 292.7 230 66.5
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 2.6e-76 289.3 230 65.7
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 2.8e-75 285.8 210 70.0
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 3.7e-75 285.4 230 65.7
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 1.1e-74 283.9 225 65.3
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 1.8e-74 283.1 229 66.8
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 4.1e-74 282.0 238 63.4
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 5.4e-74 281.6 230 65.2
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 7.0e-74 281.2 184 75.0
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 3.5e-73 278.9 215 66.0
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 4.5e-73 278.5 227 65.2
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 4.5e-73 278.5 229 64.6
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 7.7e-73 277.7 233 62.2
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 1.3e-72 276.9 226 64.2
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 1.7e-72 276.6 171 78.4
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 2.9e-72 275.8 233 62.2
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 3.8e-72 275.4 181 74.0
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 3.8e-72 275.4 212 65.6
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 6.6e-72 274.6 213 67.1
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 1.5e-71 273.5 163 77.9
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 1.5e-71 273.5 216 66.2
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 1.9e-71 273.1 228 60.5
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 1.9e-71 273.1 224 61.6
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 2.5e-71 272.7 170 75.3
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 3.3e-71 272.3 180 73.9
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 3.3e-71 272.3 182 71.4
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 4.3e-71 271.9 202 69.8
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 5.6e-71 271.6 215 65.6
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 3.6e-70 268.9 224 63.8
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 1.0e-69 267.3 164 78.7
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 1.4e-69 266.9 231 62.3
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 1.4e-69 266.9 216 66.7
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 1.8e-69 266.5 216 66.7
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 1.8e-69 266.5 200 69.5
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 2.3e-69 266.2 233 61.4
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 4.0e-69 265.4 245 59.2
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 6.8e-69 264.6 216 64.4
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 6.8e-69 264.6 179 70.9
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 3.4e-68 262.3 232 60.3
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 5.7e-68 261.5 219 62.6
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 9.8e-68 260.8 179 72.1
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 9.8e-68 260.8 224 62.5
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 1.3e-67 260.4 206 64.1
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 1.3e-67 260.4 224 62.5
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 1.7e-67 260.0 187 66.3
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 2.2e-67 259.6 171 71.3
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 2.2e-67 259.6 198 67.2
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 2.2e-67 259.6 164 75.6
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 4.9e-67 258.5 167 74.9
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 1.8e-66 256.5 177 71.8
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 1.8e-66 256.5 224 62.1
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 1.8e-66 256.5 210 61.9
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 2.4e-66 256.1 225 58.2
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 2.4e-66 256.1 230 61.3
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 3.2e-66 255.8 173 69.4
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 4.1e-66 255.4 181 71.8
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 4.1e-66 255.4 181 71.8
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 5.4e-66 255.0 171 69.6
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 1.2e-65 253.8 223 60.1
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 2.7e-65 252.7 164 73.2
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 5.9e-65 251.5 215 63.3
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 1.0e-64 250.8 175 68.0
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 1.0e-64 250.8 175 68.0
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 1.3e-64 250.4 227 61.2
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 5.0e-64 248.4 175 66.9
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 1.9e-63 246.5 203 64.0
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 2.5e-63 246.1 228 56.6
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 2.5e-63 246.1 232 57.3
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 3.3e-63 245.7 229 55.9
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 5.6e-63 245.0 199 62.8
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 1.6e-62 243.4 237 54.9
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 2.1e-62 243.0 171 69.0
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 2.1e-62 243.0 160 71.9
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 4.7e-62 241.9 159 73.6
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 4.7e-62 241.9 164 70.1
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 1.4e-61 240.4 187 63.1
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 1.8e-61 240.0 231 55.8
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 5.2e-61 238.4 164 68.9
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 5.2e-61 238.4 159 71.1
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 1.2e-60 237.3 164 68.9
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 1.2e-60 237.3 170 65.9
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 1.2e-60 237.3 166 67.5
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 4.4e-60 235.3 238 55.0
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 7.5e-60 234.6 167 67.1
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 9.8e-60 234.2 192 62.5
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 1.7e-59 233.4 164 67.7
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 8.3e-59 231.1 198 62.6
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 8.3e-59 231.1 226 57.5
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 8.3e-59 231.1 184 64.7
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 1.7e-56 223.4 125 83.2
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 3.9e-56 222.2 161 66.5
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 5.0e-56 221.9 151 68.9
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 9.5e-55 217.6 144 72.9
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 6.2e-54 214.9 136 72.8
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 1.8e-53 213.4 181 55.2
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 2.9e-51 206.1 158 65.2
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 6.4e-51 204.9 153 61.4
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 7.1e-50 201.4 126 76.2
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 2.3e-48 196.4 134 61.9
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 5.1e-48 195.3 118 78.0
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 2.9e-43 179.5 118 66.9
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 4.1e-42 175.6 115 71.3
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 2.1e-41 173.3 173 54.3
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 2.1e-38 163.3 155 54.8
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 2.1e-38 163.3 155 54.8
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 9.9e-36 154.5 94 79.8
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 2.7e-33 146.4 137 50.4
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 3.5e-33 146.0 93 76.3
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 1.7e-32 143.7 159 44.0
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 5.6e-31 138.7 135 54.8
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 2.1e-30 136.7 128 46.9
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 1.4e-29 134.0 82 75.6
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 9.9e-28 127.9 140 53.6
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 8.4e-27 124.8 138 52.9
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 5.4e-26 122.1 139 51.1
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 5.1e-24 115.5 84 65.5
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 9.3e-18 94.7 114 36.8
PRCOL_00004884 Prasinoderma coloniale HOM05D006272 ORTHO05D030206 1.9e-07 60.5 168 26.8
TPR.G22672 Trifolium pratense HOM05D006272 ORTHO05D007989 1.9e-07 60.5 38 65.8
vmacro22872 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 7.4e-07 58.5 36 69.4


User provided reference genes

Program Settings