Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 5.6e-26 120.6 79 100.0
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 1.3e-19 99.4 79 82.3
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 2.4e-16 88.6 78 74.4
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 3.1e-16 88.2 74 77.0
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 1.2e-15 86.3 73 78.1
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 2.0e-15 85.5 71 74.6
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 4.5e-15 84.3 73 69.9
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 4.5e-15 84.3 73 69.9
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 5.8e-15 84.0 71 74.6
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 7.6e-15 83.6 72 75.0
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 9.9e-15 83.2 72 75.0
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 1.3e-14 82.8 71 71.8
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 1.3e-14 82.8 74 70.3
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.3e-14 82.8 71 74.6
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.3e-14 82.8 71 74.6
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.3e-14 82.8 71 74.6
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 1.3e-14 82.8 73 68.5
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 2.2e-14 82.0 72 69.4
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 2.9e-14 81.6 69 76.8
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 3.8e-14 81.3 71 74.6
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 3.8e-14 81.3 71 74.6
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 3.8e-14 81.3 71 74.6
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 4.9e-14 80.9 70 77.1
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 8.4e-14 80.1 72 73.6
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 8.4e-14 80.1 65 81.5
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 8.4e-14 80.1 72 63.9
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 1.1e-13 79.7 65 78.5
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 1.1e-13 79.7 72 69.4
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 1.1e-13 79.7 73 74.0
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 1.1e-13 79.7 73 74.0
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 1.4e-13 79.3 72 72.2
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.4e-13 79.3 72 70.8
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 1.4e-13 79.3 73 68.5
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 1.9e-13 79.0 72 73.6
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 1.9e-13 79.0 71 76.1
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.9e-13 79.0 73 61.6
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 2.4e-13 78.6 72 73.6
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 2.4e-13 78.6 72 73.6
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 2.4e-13 78.6 68 64.7
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 2.4e-13 78.6 72 70.8
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 2.4e-13 78.6 72 73.6
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 2.4e-13 78.6 72 73.6
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 3.2e-13 78.2 72 68.1
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 4.2e-13 77.8 72 69.4
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 5.4e-13 77.4 73 75.3
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 5.4e-13 77.4 69 75.4
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 5.4e-13 77.4 75 66.7
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 5.4e-13 77.4 79 65.8
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 7.1e-13 77.0 74 66.2
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 7.1e-13 77.0 72 66.7
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 9.3e-13 76.6 72 65.3
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 9.3e-13 76.6 73 76.7
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 9.3e-13 76.6 70 75.7
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 9.3e-13 76.6 73 65.8
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 1.2e-12 76.3 72 69.4
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 1.2e-12 76.3 71 59.2
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 1.2e-12 76.3 68 76.5
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 1.2e-12 76.3 73 74.0
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 1.6e-12 75.9 73 71.2
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 2.1e-12 75.5 73 64.4
Ah.13g075720 Amaranthus hybridus HOM05D003549 ORTHO05D004223 2.7e-12 75.1 80 76.2
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 2.7e-12 75.1 72 69.4
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 2.7e-12 75.1 72 63.9
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 2.7e-12 75.1 66 71.2
AUR62036487 Chenopodium quinoa HOM05D003549 ORTHO05D004223 3.5e-12 74.7 80 75.0
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 3.5e-12 74.7 70 72.9
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 4.6e-12 74.3 72 70.8
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 4.6e-12 74.3 72 70.8
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 4.6e-12 74.3 74 74.3
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 4.6e-12 74.3 72 66.7
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 4.6e-12 74.3 72 66.7
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 6.0e-12 73.9 74 59.5
EL10Ac5g10777 Beta vulgaris HOM05D003549 ORTHO05D004223 6.0e-12 73.9 71 77.5
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 6.0e-12 73.9 72 65.3
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 7.9e-12 73.6 73 68.5
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 7.9e-12 73.6 66 68.2
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 7.9e-12 73.6 80 67.5
AUR62008230 Chenopodium quinoa HOM05D003549 ORTHO05D004223 1.0e-11 73.2 80 75.0
AUR62037088 Chenopodium quinoa HOM05D003549 ORTHO05D004223 1.0e-11 73.2 80 75.0
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 1.0e-11 73.2 72 76.4
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.0e-11 73.2 72 62.5
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.0e-11 73.2 72 62.5
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.0e-11 73.2 72 56.9
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 1.3e-11 72.8 73 56.2
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 1.8e-11 72.4 72 70.8
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 1.8e-11 72.4 72 70.8
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 1.8e-11 72.4 72 70.8
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 2.3e-11 72.0 70 70.0
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 3.9e-11 71.2 72 56.9
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 3.9e-11 71.2 69 63.8
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 3.9e-11 71.2 65 67.7
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 6.7e-11 70.5 79 60.8
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 6.7e-11 70.5 72 70.8
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 8.7e-11 70.1 65 70.8
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 8.7e-11 70.1 65 70.8
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 8.7e-11 70.1 65 70.8
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 8.7e-11 70.1 65 70.8
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 8.7e-11 70.1 63 66.7
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 1.1e-10 69.7 67 73.1
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 1.1e-10 69.7 72 63.9
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.5e-10 69.3 70 67.1
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 1.9e-10 68.9 65 70.8
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.9e-10 68.9 65 70.8
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 2.5e-10 68.6 79 59.5
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 2.5e-10 68.6 69 71.0
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 2.5e-10 68.6 72 58.3
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 3.3e-10 68.2 79 57.0
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 3.3e-10 68.2 73 56.2
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 3.3e-10 68.2 66 77.3
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 4.3e-10 67.8 73 61.6
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 4.3e-10 67.8 65 63.1
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 5.6e-10 67.4 69 58.0
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 9.6e-10 66.6 65 72.3
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 9.6e-10 66.6 71 66.2
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 1.3e-09 66.2 79 65.8
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 1.3e-09 66.2 64 68.8
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 1.3e-09 66.2 73 68.5
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 1.6e-09 65.9 74 67.6
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 1.6e-09 65.9 66 68.2
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 2.1e-09 65.5 69 63.8
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 2.1e-09 65.5 66 57.6
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 3.7e-09 64.7 63 63.5
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 6.2e-09 63.9 64 64.1
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 8.1e-09 63.5 74 63.5
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 8.1e-09 63.5 74 63.5
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 8.1e-09 63.5 74 63.5
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 8.1e-09 63.5 74 63.5
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 8.1e-09 63.5 69 66.7
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 1.1e-08 63.2 74 66.2
Hund12012 Selenicereus undatus HOM05D003549 ORTHO05D004223 1.4e-08 62.8 73 65.8
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 2.4e-08 62.0 42 73.8
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 2.4e-08 62.0 65 72.3
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 2.4e-08 62.0 42 73.8
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 3.1e-08 61.6 71 59.2
Lsat_1_v5_gn_1_26640 Lactuca sativa HOM05D000122 ORTHO05D004223 4.0e-08 61.2 73 65.8
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 5.3e-08 60.8 63 68.3
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 9.0e-08 60.1 43 72.1
Aqoxy3G02997 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.2e-07 59.7 72 66.7
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 1.2e-07 59.7 43 69.8
HanXRQChr02g0037231 Helianthus annuus HOM05D003549 ORTHO05D004223 1.2e-07 59.7 74 66.2
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 1.2e-07 59.7 70 68.6
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.5e-07 59.3 73 60.3
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 1.5e-07 59.3 79 50.6
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 1.5e-07 59.3 73 64.4
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 2.6e-07 58.5 39 71.8
Gohir.D12G274100 Gossypium hirsutum HOM05D003549 ORTHO05D004223 3.4e-07 58.2 67 68.7
Gorai.008G294500 Gossypium raimondii HOM05D003549 ORTHO05D004223 3.4e-07 58.2 67 68.7
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 5.8e-07 57.4 69 65.2
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 5.8e-07 57.4 63 69.8
unitig_749.g13471 Utricularia gibba HOM05D003549 ORTHO05D004223 7.6e-07 57.0 65 69.2
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.3e-06 56.2 63 50.8
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 1.7e-06 55.8 80 62.5
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 1.7e-06 55.8 36 75.0
Cfa019097 Carpinus fangiana HOM05D003549 ORTHO05D004223 2.2e-06 55.5 120 47.5
QL10p012114 Quercus lobata HOM05D003549 ORTHO05D004223 2.9e-06 55.1 122 45.1
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 4.9e-06 54.3 79 60.8
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 4.9e-06 54.3 73 47.9
Sopen12g011080 Solanum pennellii HOM05D003549 ORTHO05D004223 4.9e-06 54.3 43 62.8


User provided reference genes

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