Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0004680 Simmondsia chinensis HOM05D005659 ORTHO05D007059 1.4e-78 296.2 148 100.0
Cpa.g.sc195.32 Carica papaya HOM05D005659 ORTHO05D007059 4.5e-61 238.0 150 78.0
Thecc.09G277800 Theobroma cacao HOM05D005659 ORTHO05D007059 1.1e-59 233.4 148 77.0
CiPaw.14G097600 Carya illinoinensis HOM05D005659 ORTHO05D007059 2.5e-59 232.3 151 76.8
Oeu002356.1 Olea europaea HOM05D005659 ORTHO05D007059 9.4e-59 230.3 150 74.7
CANSAT54G0546 Cannabis sativa HOM05D005659 ORTHO05D007059 1.2e-58 229.9 148 75.7
TWI75G1160 Tripterygium wilfordii HOM05D005659 ORTHO05D007059 1.6e-58 229.6 151 76.2
Cfa009983 Carpinus fangiana HOM05D005659 ORTHO05D007059 2.7e-58 228.8 150 71.3
Sed0025059 Sechium edule HOM05D005659 ORTHO05D007059 2.7e-58 228.8 148 77.0
Haze_23342 Corylus avellana HOM05D005659 ORTHO05D007059 4.7e-58 228.0 150 72.7
Manes.04G000900 Manihot esculenta HOM05D005659 ORTHO05D007059 1.0e-57 226.9 145 75.2
A09p65930 Brassica napus HOM05D005659 ORTHO05D007059 1.8e-57 226.1 147 73.5
BraA09t41937Z Brassica rapa HOM05D005659 ORTHO05D007059 1.8e-57 226.1 147 73.5
CAN.G919.41 Capsicum annuum HOM05D005659 ORTHO05D007059 1.8e-57 226.1 147 76.9
GSVIVG01036077001 Vitis vinifera HOM05D005659 ORTHO05D007059 1.8e-57 226.1 149 75.2
Aa31sc785G10 Aethionema arabicum HOM05D005659 ORTHO05D007059 2.3e-57 225.7 148 73.6
Carub.0001s0773 Capsella rubella HOM05D005659 ORTHO05D007059 5.2e-57 224.6 148 73.0
EL10Ac4g08175 Beta vulgaris HOM05D005659 ORTHO05D007059 6.7e-57 224.2 148 75.0
Ciclev10029515m.g Citrus clementina HOM05D005659 ORTHO05D007059 6.7e-57 224.2 146 74.0
AT1G08380 Arabidopsis thaliana HOM05D005659 ORTHO05D007059 1.2e-56 223.4 148 72.3
CsaV3_1G015100 Cucumis sativus L. HOM05D005659 ORTHO05D007059 1.2e-56 223.4 145 75.9
Nitab4.5_0006903g0010 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.2e-56 223.4 148 75.0
Sabra09G0125800 Salix brachista HOM05D005659 ORTHO05D007059 1.2e-56 223.4 150 74.0
BcaC07g42532 Brassica carinata HOM05D005659 ORTHO05D007059 1.5e-56 223.0 147 72.8
BolC8t52533H Brassica oleracea HOM05D005659 ORTHO05D007059 2.0e-56 222.6 147 72.1
Gohir.D05G082100 Gossypium hirsutum HOM05D005659 ORTHO05D007059 2.0e-56 222.6 147 74.1
Peaxi162Scf00091g00713 Petunia axillaris HOM05D005659 ORTHO05D007059 2.0e-56 222.6 147 74.8
Sabra04G0134500 Salix brachista HOM05D005659 ORTHO05D007059 2.6e-56 222.2 149 72.5
DCAR_012226 Daucus carota HOM05D005659 ORTHO05D007059 3.3e-56 221.9 146 71.9
PGR102G0055 Punica granatum HOM05D005659 ORTHO05D007059 3.3e-56 221.9 148 74.3
BcaC07g41946 Brassica carinata HOM05D005659 ORTHO05D007059 5.7e-56 221.1 147 72.1
C08p50030 Brassica napus HOM05D005659 ORTHO05D007059 5.7e-56 221.1 147 72.1
Gohir.A05G079200 Gossypium hirsutum HOM05D005659 ORTHO05D007059 5.7e-56 221.1 147 74.1
Sp1g07030 Schrenkiella parvula HOM05D005659 ORTHO05D007059 5.7e-56 221.1 147 72.8
Solyc06g074200.4 Solanum lycopersicum HOM05D005659 ORTHO05D007059 5.7e-56 221.1 147 74.1
Sopen06g030620 Solanum pennellii HOM05D005659 ORTHO05D007059 5.7e-56 221.1 147 74.1
BcaB03g13338 Brassica carinata HOM05D005659 ORTHO05D007059 7.5e-56 220.7 147 72.1
Gorai.009G083700 Gossypium raimondii HOM05D005659 ORTHO05D007059 7.5e-56 220.7 147 73.5
PGSC0003DMG400005890 Solanum tuberosum HOM05D005659 ORTHO05D007059 9.7e-56 220.3 147 73.5
Atru.chr3.3161 Acer truncatum HOM05D005659 ORTHO05D007059 1.3e-55 219.9 148 70.3
CSS0022105 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 1.3e-55 219.9 151 73.5
Cc01_g08780 Coffea canephora HOM05D005659 ORTHO05D007059 1.3e-55 219.9 149 73.8
BcaB07g34086 Brassica carinata HOM05D005659 ORTHO05D007059 2.2e-55 219.2 147 71.4
C05p06520 Brassica napus HOM05D005659 ORTHO05D007059 2.2e-55 219.2 147 71.4
BolC5t29412H Brassica oleracea HOM05D005659 ORTHO05D007059 2.2e-55 219.2 147 71.4
CARHR008270 Cardamine hirsuta HOM05D005659 ORTHO05D007059 2.2e-55 219.2 147 72.1
Hma1.2p1_2164F.1_g315750 Hydrangea macrophylla HOM05D005659 ORTHO05D007059 3.7e-55 218.4 149 71.1
Potri.004G199400 Populus trichocarpa HOM05D005659 ORTHO05D007059 3.7e-55 218.4 149 71.1
THA.LOC104826438 Tarenaya hassleriana HOM05D005659 ORTHO05D007059 6.3e-55 217.6 148 73.0
MD03G1150500 Malus domestica HOM05D005659 ORTHO05D007059 8.2e-55 217.2 147 72.8
Potri.009G160800 Populus trichocarpa HOM05D005659 ORTHO05D007059 8.2e-55 217.2 150 70.0
MD11G1169900 Malus domestica HOM05D005659 ORTHO05D007059 1.8e-54 216.1 147 72.1
A06p05400 Brassica napus HOM05D005659 ORTHO05D007059 3.1e-54 215.3 145 71.0
A08p35240 Brassica napus HOM05D005659 ORTHO05D007059 3.1e-54 215.3 136 73.5
BraA06t23749Z Brassica rapa HOM05D005659 ORTHO05D007059 3.1e-54 215.3 145 71.0
Gohir.D07G115000 Gossypium hirsutum HOM05D005659 ORTHO05D007059 3.1e-54 215.3 148 73.6
Gorai.001G123200 Gossypium raimondii HOM05D005659 ORTHO05D007059 5.3e-54 214.5 148 73.0
Eucgr.B03824 Eucalyptus grandis HOM05D005659 ORTHO05D007059 7.0e-54 214.2 148 70.9
MBI17_g28186_MAGBIO Magnolia biondii HOM05D005659 ORTHO05D007059 7.0e-54 214.2 144 74.3
Glyma.11G181100 Glycine max HOM05D005659 ORTHO05D007059 1.2e-53 213.4 141 74.5
Glyma.12G092000 Glycine max HOM05D005659 ORTHO05D007059 1.2e-53 213.4 141 73.8
AL1G18790 Arabidopsis lyrata HOM05D005659 ORTHO05D007059 3.5e-53 211.8 114 82.5
arahy.Tifrunner.gnm1.ann1.QDSR7W Arachis hypogaea HOM05D005659 ORTHO05D007059 3.5e-53 211.8 150 72.0
Prupe.6G137400 Prunus persica HOM05D005659 ORTHO05D007059 3.5e-53 211.8 149 72.5
Aqoxy4G02709 Aquilegia oxysepala HOM05D005659 ORTHO05D007059 4.5e-53 211.5 148 68.2
CSS0045008 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 5.9e-53 211.1 149 71.1
MSTRG.18774 Avicennia marina HOM05D005659 ORTHO05D007059 1.0e-52 210.3 144 71.5
SalBow6G0820 Salvia bowleyana HOM05D005659 ORTHO05D007059 1.0e-52 210.3 147 70.7
arahy.Tifrunner.gnm1.ann1.MVQ7LV Arachis hypogaea HOM05D005659 ORTHO05D007059 2.9e-52 208.8 150 70.7
Phvul.011G096400 Phaseolus vulgaris HOM05D005659 ORTHO05D007059 2.9e-52 208.8 145 71.0
VMungo1127G0741 Vigna mungo HOM05D005659 ORTHO05D007059 3.8e-52 208.4 145 72.4
Dinv22811 Davidia involucrata HOM05D005659 ORTHO05D007059 5.0e-52 208.0 120 77.5
MELO3C025587.2 Cucumis melo HOM05D005659 ORTHO05D007059 1.1e-51 206.8 173 63.6
HanXRQChr04g0128561 Helianthus annuus HOM05D005659 ORTHO05D007059 1.1e-51 206.8 142 69.7
EL10Ac4g08170 Beta vulgaris HOM05D005659 ORTHO05D007059 1.5e-51 206.5 116 81.9
Ca_26075_v3 Cicer arietinum L. HOM05D005659 ORTHO05D007059 1.5e-51 206.5 137 70.8
Lj3g0027363 Lotus japonicus HOM05D005659 ORTHO05D007059 1.5e-51 206.5 142 72.5
Psat7g186640 Pisum sativum HOM05D005659 ORTHO05D007059 3.2e-51 205.3 136 70.6
Medtr4g052420 Medicago truncatula HOM05D005659 ORTHO05D007059 5.5e-51 204.5 137 70.8
Duzib170G0332 Durio zibethinus HOM05D005659 ORTHO05D007059 9.4e-51 203.8 148 68.9
SGA_v2.0_scaffold7G03995 Striga asiatica HOM05D005659 ORTHO05D007059 1.2e-50 203.4 148 68.9
BraA08t35432Z Brassica rapa HOM05D005659 ORTHO05D007059 1.6e-50 203.0 136 71.3
TPR.G17220 Trifolium pratense HOM05D005659 ORTHO05D007059 1.6e-50 203.0 124 77.4
unitig_0.g1472 Utricularia gibba HOM05D005659 ORTHO05D007059 1.6e-50 203.0 144 68.1
CDE08G1285 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 2.1e-50 202.6 147 66.7
PSO339G3866 Papaver somniferum HOM05D005659 ORTHO05D007059 2.7e-50 202.2 148 65.5
vmacro14338 Vaccinium macrocarpon HOM05D005659 ORTHO05D007059 2.7e-50 202.2 150 66.7
ECA236G2734 Erigeron canadensis HOM05D005659 ORTHO05D007059 3.6e-50 201.8 143 72.0
PSO384G5049 Papaver somniferum HOM05D005659 ORTHO05D007059 3.6e-50 201.8 148 65.5
CDE02G1582 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 4.7e-50 201.4 147 65.3
Lalb_Chr03g0028281 Lupinus albus HOM05D005659 ORTHO05D007059 4.7e-50 201.4 142 71.1
RcHm_v2.0_Chr5g0046981 Rosa chinensis HOM05D005659 ORTHO05D007059 6.1e-50 201.1 151 68.9
Actinidia37070 Actinidia chinensis HOM05D005659 ORTHO05D007059 8.0e-50 200.7 144 70.8
Migut.D02409 Erythranthe guttata HOM05D005659 ORTHO05D007059 1.4e-49 199.9 115 79.1
FAN11G1786 Fragaria x ananassa HOM05D005659 ORTHO05D007059 8.8e-49 197.2 150 65.3
FAN21G2850 Fragaria x ananassa HOM05D005659 ORTHO05D007059 1.2e-48 196.8 150 65.3
C08p03620 Brassica napus HOM05D005659 ORTHO05D007059 2.0e-48 196.1 113 78.8
FvH4_3g25770 Fragaria vesca HOM05D005659 ORTHO05D007059 7.5e-48 194.1 150 64.7
FAN16G1033 Fragaria x ananassa HOM05D005659 ORTHO05D007059 9.8e-48 193.7 150 64.0
FAN25G1572 Fragaria x ananassa HOM05D005659 ORTHO05D007059 9.8e-48 193.7 150 64.0
Actinidia35474 Actinidia chinensis HOM05D005659 ORTHO05D007059 4.8e-47 191.4 144 68.1
ATR0579G079 Amborella trichopoda HOM05D005659 ORTHO05D007059 4.8e-47 191.4 146 67.8
HPP92_009876 Vanilla planifolia HOM05D005659 ORTHO05D007059 5.4e-46 188.0 136 69.1
Lsat_1_v5_gn_7_85921 Lactuca sativa HOM05D005659 ORTHO05D007059 2.7e-45 185.7 143 65.7
Os04g0414700 Oryza sativa ssp. japonica HOM05D005659 ORTHO05D007059 1.5e-43 179.9 144 67.4
ClCG01G011760 Citrullus lanatus HOM05D005659 ORTHO05D007059 1.2e-40 170.2 86 87.2
Zm00001eb083680 Zea mays HOM05D005659 ORTHO05D007059 1.2e-40 170.2 96 78.1
Nitab4.5_0000937g0110 Nicotiana tabacum HOM05D005659 ORTHO05D007059 2.6e-40 169.1 84 88.1
Mapoly0064s0077 Marchantia polymorpha HOM05D005659 ORTHO05D007059 5.7e-40 167.9 145 58.6
AUR62001528 Chenopodium quinoa HOM05D005659 ORTHO05D007059 1.3e-39 166.8 116 76.7
TAR633G2174 Trochodendron aralioides HOM05D005659 ORTHO05D007059 3.7e-39 165.2 119 71.4
SEGI_08129 Sequoiadendron giganteum HOM05D005659 ORTHO05D007059 1.8e-38 162.9 143 62.9
Pp3c15_16700 Physcomitrium patens HOM05D005659 ORTHO05D007059 3.1e-38 162.2 147 55.8
QL01p011787 Quercus lobata HOM05D005659 ORTHO05D007059 1.2e-37 160.2 120 70.8
Pp3c15_16690 Physcomitrium patens HOM05D005659 ORTHO05D007059 1.6e-37 159.8 149 56.4
Nn2g14238 Nelumbo nucifera HOM05D005659 ORTHO05D007059 2.7e-37 159.1 119 68.1
BcaB03g13340 Brassica carinata HOM05D005659 ORTHO05D007059 3.3e-35 152.1 117 63.2
SMO163G0051 Selaginella moellendorffii HOM05D005659 ORTHO05D007059 5.6e-35 151.4 90 73.3
Hund18778 Selenicereus undatus HOM05D005659 ORTHO05D007059 5.2e-33 144.8 116 70.7
Ah.08g223250 Amaranthus hybridus HOM05D005659 ORTHO05D007059 6.8e-33 144.4 118 66.9
Rhsim01G0203000 Rhododendron simsii HOM05D005659 ORTHO05D007059 1.7e-31 139.8 116 62.9
ATR0772G031 Amborella trichopoda HOM05D005659 ORTHO05D007059 1.1e-30 137.1 119 63.0
unitig_88.g27645 Utricularia gibba HOM05D005659 ORTHO05D007059 6.0e-29 131.3 89 68.5
Thhalv10009047m.g Eutrema salsugineum HOM05D005659 ORTHO05D007059 6.6e-28 127.9 147 49.7
Nitab4.5_0005472g0080 Nicotiana tabacum HOM05D005659 ORTHO05D007059 3.3e-27 125.6 117 61.5
TAR623G1200 Trochodendron aralioides HOM05D005659 ORTHO05D007059 1.5e-24 116.7 90 67.8
Manes.11G164551 Manihot esculenta HOM05D005659 ORTHO05D007059 2.3e-20 102.8 91 58.2
Cre07.g334550 Chlamydomonas reinhardtii HOM05D005659 ORTHO05D007059 5.1e-20 101.7 92 51.1
MCO01G581 Micromonas commoda HOM05D005659 ORTHO05D007059 9.9e-16 87.4 91 42.9
Peaxi162Scf00345g01024 Petunia axillaris HOM05D005659 ORTHO05D007059 8.3e-15 84.3 158 38.0
Gohir.A07G111250 Gossypium hirsutum HOM05D005659 ORTHO05D007059 3.3e-11 72.4 71 59.2
Nitab4.5_0003068g0060 Nicotiana tabacum HOM05D005659 ORTHO05D007059 4.3e-11 72.0 80 53.8
MD11G1234000 Malus domestica HOM05D005659 ORTHO05D007059 2.0e-08 63.2 77 51.9
MD17G1209900 Malus domestica HOM05D005659 ORTHO05D007059 7.6e-08 61.2 77 51.9


User provided reference genes

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