Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 3.5e-220 768.1 409 100.0
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 3.2e-117 426.0 357 66.1
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 5.2e-115 418.7 400 59.2
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 1.6e-111 407.1 413 57.4
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 7.2e-109 398.3 410 57.3
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 1.6e-108 397.1 390 59.0
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 1.4e-107 394.0 396 57.1
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 3.0e-107 392.9 401 54.9
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 4.0e-107 392.5 414 55.3
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 4.4e-106 389.0 379 56.5
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 1.3e-105 387.5 416 54.3
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 1.3e-105 387.5 365 59.7
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 5.3e-104 382.1 319 63.6
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 3.5e-103 379.4 415 54.0
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 4.5e-103 379.0 391 55.5
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 1.7e-102 377.1 390 55.6
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.7e-102 377.1 390 55.6
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 2.2e-102 376.7 315 62.9
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 3.8e-102 375.9 392 55.9
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.0e-102 375.6 380 56.6
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 6.5e-102 375.2 433 52.4
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 8.5e-102 374.8 334 61.4
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 8.5e-102 374.8 327 62.1
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 8.5e-102 374.8 405 53.1
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 1.5e-101 374.0 354 59.0
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.9e-101 373.6 390 55.4
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 4.2e-101 372.5 395 54.7
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 7.2e-101 371.7 432 52.3
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.2e-100 370.9 422 53.1
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 1.6e-100 370.5 374 56.1
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 2.1e-100 370.2 362 56.9
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.6e-100 369.4 330 62.4
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 4.7e-100 369.0 386 56.2
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 4.7e-100 369.0 345 59.4
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 6.1e-100 368.6 327 59.3
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 8.0e-100 368.2 403 52.6
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 1.0e-99 367.9 410 53.4
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 1.8e-99 367.1 400 51.5
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 1.2e-98 364.4 406 52.2
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.5e-98 364.0 356 58.1
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 2.0e-98 363.6 392 52.3
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 2.6e-98 363.2 418 49.5
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 4.4e-98 362.5 324 59.9
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 5.7e-98 362.1 403 53.3
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 7.5e-98 361.7 324 59.9
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 1.7e-97 360.5 403 52.9
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 2.8e-97 359.8 356 56.2
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 3.7e-97 359.4 421 51.1
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 1.4e-96 357.5 324 59.6
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 1.4e-96 357.5 399 51.6
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 2.4e-96 356.7 326 57.7
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 1.6e-95 354.0 343 56.0
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 4.5e-95 352.4 340 54.7
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 7.7e-95 351.7 336 57.4
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.0e-94 351.3 358 54.2
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 2.9e-94 349.7 358 53.6
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 2.9e-94 349.7 350 56.9
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 3.8e-94 349.4 374 53.2
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 3.8e-94 349.4 324 55.9
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 5.0e-94 349.0 358 53.6
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 6.6e-94 348.6 412 49.0
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 1.1e-93 347.8 312 60.3
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 1.9e-93 347.1 355 53.8
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 7.2e-93 345.1 350 54.3
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 9.5e-93 344.7 355 52.1
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.7e-92 342.4 456 48.5
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 1.0e-91 341.3 318 59.1
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.4e-91 340.9 328 56.4
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 2.3e-91 340.1 345 55.1
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 2.3e-91 340.1 345 55.1
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 3.0e-91 339.7 331 56.5
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 3.0e-91 339.7 331 56.5
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 8.9e-91 338.2 343 55.1
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 2.0e-90 337.0 371 53.6
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.3e-89 334.3 413 51.1
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 2.4e-88 330.1 321 54.8
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 9.2e-88 328.2 384 53.6
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 5.9e-87 325.5 424 48.3
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 1.0e-86 324.7 324 56.5
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 2.3e-86 323.6 280 62.1
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 5.0e-86 322.4 340 50.6
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 1.6e-84 317.4 355 51.0
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 8.0e-84 315.1 437 47.4
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 7.5e-82 308.5 280 59.3
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 4.1e-80 302.8 401 48.1
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 9.2e-80 301.6 284 57.7
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 1.1e-77 294.7 273 57.1
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 2.2e-73 280.4 322 51.6
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 3.0e-70 270.0 473 40.2
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 3.3e-69 266.5 522 37.0
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 8.1e-68 261.9 235 60.0
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 1.1e-67 261.5 383 43.6
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.9e-64 250.8 335 45.7
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 1.2e-63 248.1 282 50.0
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 1.3e-62 244.6 248 52.0
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 5.1e-62 242.7 337 45.4
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 2.8e-60 236.9 279 48.0
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 2.4e-59 233.8 280 52.9
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 8.9e-59 231.9 259 55.6
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 5.8e-58 229.2 256 50.8
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 2.1e-55 220.7 242 53.3
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 6.0e-55 219.2 190 62.1
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 3.9e-54 216.5 217 55.3
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 2.5e-53 213.8 201 56.7
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 3.3e-53 213.4 315 40.0
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 8.4e-49 198.7 346 39.9
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 3.0e-46 190.3 185 51.9
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 6.6e-46 189.1 219 54.3
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 4.3e-45 186.4 306 39.2
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 3.8e-41 173.3 209 51.7
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-41 172.9 211 44.1
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.5e-37 161.4 346 36.1
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 1.5e-37 161.4 191 49.7
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 7.4e-37 159.1 211 47.9
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 1.4e-35 154.8 323 34.4
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 1.5e-34 151.4 142 57.7
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 3.8e-33 146.7 115 67.0
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.2e-31 141.7 325 34.5
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 8.7e-30 135.6 329 30.1
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.5e-29 134.8 325 29.2
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 1.9e-29 134.4 138 52.2
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 7.4e-29 132.5 204 44.6
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 1.3e-28 131.7 158 49.4
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 9.0e-27 125.6 115 56.5
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.6e-26 124.0 374 28.9
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 3.4e-26 123.6 104 64.4
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.3e-25 121.7 353 26.1
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.1e-24 118.6 124 55.6
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.6e-23 114.8 81 71.6
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 1.8e-22 111.3 95 58.9
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 3.3e-21 107.1 80 68.8
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 3.3e-21 107.1 117 54.7
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 2.0e-18 97.8 67 79.1
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 4.5e-18 96.7 84 59.5
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 1.3e-17 95.1 166 41.0
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 3.8e-17 93.6 113 47.8
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 1.1e-16 92.0 69 63.8
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 2.5e-16 90.9 143 42.7
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 9.4e-16 89.0 87 55.2
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 5.1e-14 83.2 87 52.9
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 3.7e-12 77.0 88 44.3
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 4.8e-12 76.6 67 58.2
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 4.8e-12 76.6 51 78.4
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 6.3e-12 76.3 99 41.4
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.3e-11 73.2 79 54.4
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 6.9e-11 72.8 63 58.7
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 9.1e-11 72.4 69 55.1
MCO11G881 Micromonas commoda HOM05D005062 ORTHO05D028578 8.5e-09 65.9 337 26.7
ClCG11G017120 Citrullus lanatus HOM05D000943 ORTHO05D008314 7.2e-08 62.8 279 24.7
SEGI_13629 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 3.6e-07 60.5 60 48.3
CsaV3_4G032780 Cucumis sativus L. HOM05D000943 ORTHO05D008314 6.1e-07 59.7 274 24.8
MELO3C025675.2 Cucumis melo HOM05D000943 ORTHO05D008314 1.4e-06 58.5 274 24.5
TWI38G0474 Tripterygium wilfordii HOM05D000943 ORTHO05D008314 3.0e-06 57.4 283 23.3
Cre02.g095086 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D028578 3.9e-06 57.0 224 24.6


User provided reference genes

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