Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0004410 Simmondsia chinensis HOM05D006704 ORTHO05D008635 5.1e-173 610.9 292 100.0
AUR62009778 Chenopodium quinoa HOM05D006704 ORTHO05D008635 3.9e-133 478.4 295 78.3
AUR62039223 Chenopodium quinoa HOM05D006704 ORTHO05D008635 2.5e-132 475.7 295 78.3
Hund20877 Selenicereus undatus HOM05D006704 ORTHO05D008635 8.2e-131 470.7 295 77.3
EL10Ac7g15806 Beta vulgaris HOM05D006704 ORTHO05D008635 1.1e-130 470.3 295 77.3
Ah.08g215840 Amaranthus hybridus HOM05D006704 ORTHO05D008635 3.2e-127 458.8 293 75.1
Ciclev10028571m.g Citrus clementina HOM05D006704 ORTHO05D008635 7.2e-127 457.6 296 70.3
GSVIVG01036154001 Vitis vinifera HOM05D006704 ORTHO05D008635 3.6e-126 455.3 290 74.8
FvH4_3g24630 Fragaria vesca HOM05D006704 ORTHO05D008635 1.0e-125 453.8 295 70.2
RcHm_v2.0_Chr5g0044201 Rosa chinensis HOM05D006704 ORTHO05D008635 1.0e-125 453.8 293 71.3
FAN21G3586 Fragaria x ananassa HOM05D006704 ORTHO05D008635 6.7e-125 451.1 295 69.8
FAN11G2081 Fragaria x ananassa HOM05D006704 ORTHO05D008635 1.5e-124 449.9 295 69.2
Lj3g0010910 Lotus japonicus HOM05D006704 ORTHO05D008635 1.9e-124 449.5 298 70.5
Potri.004G184400 Populus trichocarpa HOM05D006704 ORTHO05D008635 3.3e-124 448.7 296 72.0
COL.COLO4_19912 Corchorus olitorius HOM05D006704 ORTHO05D008635 1.6e-123 446.4 295 69.8
Thecc.09G286000 Theobroma cacao HOM05D006704 ORTHO05D008635 3.7e-123 445.3 295 69.2
Dinv29464 Davidia involucrata HOM05D006704 ORTHO05D008635 6.3e-123 444.5 292 70.2
Glyma.12G087800 Glycine max HOM05D006704 ORTHO05D008635 6.3e-123 444.5 298 68.5
Rhsim13G0110100 Rhododendron simsii HOM05D006704 ORTHO05D008635 6.3e-123 444.5 297 68.7
vmacro03306 Vaccinium macrocarpon HOM05D006704 ORTHO05D008635 6.3e-123 444.5 298 68.1
Glyma.11G184500 Glycine max HOM05D006704 ORTHO05D008635 1.1e-122 443.7 298 68.1
Gorai.009G086600 Gossypium raimondii HOM05D006704 ORTHO05D008635 1.4e-122 443.4 295 70.2
Hma1.2p1_0305F.1_g119670 Hydrangea macrophylla HOM05D006704 ORTHO05D008635 1.8e-122 443.0 290 70.3
Manes.11G160500 Manihot esculenta HOM05D006704 ORTHO05D008635 1.8e-122 443.0 295 68.8
Medtr4g053410 Medicago truncatula HOM05D006704 ORTHO05D008635 2.4e-122 442.6 298 68.8
TPR.G17210 Trifolium pratense HOM05D006704 ORTHO05D008635 2.4e-122 442.6 298 69.1
Gohir.A05G081700 Gossypium hirsutum HOM05D006704 ORTHO05D008635 3.1e-122 442.2 295 70.5
TWI31G0547 Tripterygium wilfordii HOM05D006704 ORTHO05D008635 3.1e-122 442.2 297 69.7
arahy.Tifrunner.gnm1.ann1.JHI8LQ Arachis hypogaea HOM05D006704 ORTHO05D008635 5.3e-122 441.4 295 69.8
QL01p012560 Quercus lobata HOM05D006704 ORTHO05D008635 5.3e-122 441.4 294 69.4
MD03G1142000 Malus domestica HOM05D006704 ORTHO05D008635 1.2e-121 440.3 296 69.3
Nn6g34957 Nelumbo nucifera HOM05D006704 ORTHO05D008635 1.2e-121 440.3 296 68.9
TAR633G0569 Trochodendron aralioides HOM05D006704 ORTHO05D008635 1.2e-121 440.3 296 67.9
Psat7g188440 Pisum sativum HOM05D006704 ORTHO05D008635 1.5e-121 439.9 299 68.6
arahy.Tifrunner.gnm1.ann1.GMPU9C Arachis hypogaea HOM05D006704 ORTHO05D008635 2.0e-121 439.5 295 69.5
Sabra04G0124100 Salix brachista HOM05D006704 ORTHO05D008635 2.6e-121 439.1 296 69.6
Solyc06g074380.3 Solanum lycopersicum HOM05D006704 ORTHO05D008635 2.6e-121 439.1 292 69.5
Atru.chr3.3296 Acer truncatum HOM05D006704 ORTHO05D008635 3.4e-121 438.7 298 69.1
DCAR_006157 Daucus carota HOM05D006704 ORTHO05D008635 4.5e-121 438.3 292 70.2
Gohir.D05G084700 Gossypium hirsutum HOM05D006704 ORTHO05D008635 5.9e-121 438.0 295 69.5
Lalb_Chr03g0028021 Lupinus albus HOM05D006704 ORTHO05D008635 5.9e-121 438.0 296 68.9
PGR119G0959 Punica granatum HOM05D006704 ORTHO05D008635 5.9e-121 438.0 291 68.7
Nitab4.5_0002002g0030 Nicotiana tabacum HOM05D006704 ORTHO05D008635 1.7e-120 436.4 292 69.5
Sopen06g030840 Solanum pennellii HOM05D006704 ORTHO05D008635 1.7e-120 436.4 292 69.5
Peaxi162Scf00091g00118 Petunia axillaris HOM05D006704 ORTHO05D008635 2.2e-120 436.0 292 69.9
CSS0007169 Camellia sinensis var. sinensis HOM05D006704 ORTHO05D008635 3.8e-120 435.3 298 68.1
CSS0018673 Camellia sinensis var. sinensis HOM05D006704 ORTHO05D008635 3.8e-120 435.3 298 68.1
Ca_19394_v3 Cicer arietinum L. HOM05D006704 ORTHO05D008635 5.0e-120 434.9 297 68.4
PGSC0003DMG400007144 Solanum tuberosum HOM05D006704 ORTHO05D008635 5.0e-120 434.9 292 69.2
Duzib170G0143 Durio zibethinus HOM05D006704 ORTHO05D008635 8.5e-120 434.1 295 68.1
Nitab4.5_0015718g0010 Nicotiana tabacum HOM05D006704 ORTHO05D008635 8.5e-120 434.1 288 69.8
Cfa010042 Carpinus fangiana HOM05D006704 ORTHO05D008635 1.1e-119 433.7 296 68.6
Cc01_g09380 Coffea canephora HOM05D006704 ORTHO05D008635 2.5e-119 432.6 296 68.6
SalBow6G4963 Salvia bowleyana HOM05D006704 ORTHO05D008635 9.4e-119 430.6 296 69.3
VMungo1127G0699 Vigna mungo HOM05D006704 ORTHO05D008635 1.2e-118 430.3 297 66.3
Lj2A980T13 Lonicera japonica HOM05D006704 ORTHO05D008635 2.1e-118 429.5 313 64.2
Nitab4.5_0002002g0020 Nicotiana tabacum HOM05D006704 ORTHO05D008635 6.1e-118 427.9 287 68.6
CAN.G919.21 Capsicum annuum HOM05D006704 ORTHO05D008635 7.9e-118 427.6 292 68.5
AL4G22810 Arabidopsis lyrata HOM05D006704 ORTHO05D008635 1.8e-117 426.4 291 68.0
Phvul.011G092800 Phaseolus vulgaris HOM05D006704 ORTHO05D008635 1.8e-117 426.4 298 65.4
THA.LOC104800539 Tarenaya hassleriana HOM05D006704 ORTHO05D008635 2.3e-117 426.0 290 69.7
AT2G27590 Arabidopsis thaliana HOM05D006704 ORTHO05D008635 5.1e-117 424.9 291 67.7
Carub.0004s0825 Capsella rubella HOM05D006704 ORTHO05D008635 1.1e-116 423.7 290 67.2
Thhalv10016700m.g Eutrema salsugineum HOM05D006704 ORTHO05D008635 1.1e-116 423.7 291 68.0
MELO3C004818.2 Cucumis melo HOM05D006704 ORTHO05D008635 3.3e-116 422.2 298 65.4
CsaV3_1G014420 Cucumis sativus L. HOM05D006704 ORTHO05D008635 3.3e-116 422.2 298 65.8
CARHR121470 Cardamine hirsuta HOM05D006704 ORTHO05D008635 4.3e-116 421.8 291 66.7
Sp4g10410 Schrenkiella parvula HOM05D006704 ORTHO05D008635 5.7e-116 421.4 291 68.0
Aqoxy2G01240 Aquilegia oxysepala HOM05D006704 ORTHO05D008635 9.7e-116 420.6 294 65.6
Sed0027356 Sechium edule HOM05D006704 ORTHO05D008635 9.7e-116 420.6 299 65.9
HanXRQChr12g0364591 Helianthus annuus HOM05D006704 ORTHO05D008635 2.8e-115 419.1 292 66.4
Migut.D02353 Erythranthe guttata HOM05D006704 ORTHO05D008635 3.7e-115 418.7 293 67.9
ClCG01G012900 Citrullus lanatus HOM05D006704 ORTHO05D008635 6.3e-115 417.9 298 65.1
PSO384G3226 Papaver somniferum HOM05D006704 ORTHO05D008635 6.3e-115 417.9 291 66.7
Prupe.6G127300 Prunus persica HOM05D006704 ORTHO05D008635 8.2e-115 417.5 288 67.7
PSO339G4200 Papaver somniferum HOM05D006704 ORTHO05D008635 1.8e-114 416.4 294 67.0
MSTRG.18751 Avicennia marina HOM05D006704 ORTHO05D008635 2.4e-114 416.0 300 67.0
BcaB06g28156 Brassica carinata HOM05D006704 ORTHO05D008635 5.3e-114 414.8 292 66.4
ECA233G1041 Erigeron canadensis HOM05D006704 ORTHO05D008635 9.1e-114 414.1 295 65.8
Lsat_1_v5_gn_6_40481 Lactuca sativa HOM05D006704 ORTHO05D008635 1.5e-113 413.3 292 65.8
SGA_v2.0_scaffold22G09877 Striga asiatica HOM05D006704 ORTHO05D008635 1.5e-113 413.3 292 67.8
Eucgr.I00893 Eucalyptus grandis HOM05D006704 ORTHO05D008635 2.0e-113 412.9 297 65.7
A04p21040 Brassica napus HOM05D006704 ORTHO05D008635 3.4e-113 412.1 291 66.0
BraA04t17672Z Brassica rapa HOM05D006704 ORTHO05D008635 3.4e-113 412.1 291 66.0
Aa31LG5G8320 Aethionema arabicum HOM05D006704 ORTHO05D008635 4.5e-113 411.8 290 66.2
BolC4t27219H Brassica oleracea HOM05D006704 ORTHO05D008635 1.3e-112 410.2 293 65.9
BcaC02g08239 Brassica carinata HOM05D006704 ORTHO05D008635 2.2e-112 409.5 292 65.4
C04p56860 Brassica napus HOM05D006704 ORTHO05D008635 2.2e-112 409.5 292 65.4
CANSAT54G0988 Cannabis sativa HOM05D006704 ORTHO05D008635 2.9e-112 409.1 292 63.7
CDE06G2417 Ceratophyllum demersum HOM05D006704 ORTHO05D008635 5.0e-112 408.3 292 66.8
MBI17_g08127_MAGBIO Magnolia biondii HOM05D006704 ORTHO05D008635 1.4e-111 406.8 304 63.5
HPP92_000003 Vanilla planifolia HOM05D006704 ORTHO05D008635 1.8e-109 399.8 295 65.4
CiPaw.13G137600 Carya illinoinensis HOM05D006704 ORTHO05D008635 3.9e-109 398.7 276 65.9
unitig_37.g12893 Utricularia gibba HOM05D006704 ORTHO05D008635 1.4e-106 390.2 293 62.5
Os01g0858700 Oryza sativa ssp. japonica HOM05D006704 ORTHO05D008635 3.1e-106 389.0 294 62.9
Haze_23402 Corylus avellana HOM05D006704 ORTHO05D008635 1.0e-104 384.0 407 49.6
Zm00001eb147310 Zea mays HOM05D006704 ORTHO05D008635 1.3e-104 383.6 294 61.2
ATR0820G138 Amborella trichopoda HOM05D006704 ORTHO05D008635 1.8e-98 363.2 290 59.7
FAN16G1713 Fragaria x ananassa HOM05D006704 ORTHO05D008635 3.8e-96 355.5 248 66.1
SEGI_32150 Sequoiadendron giganteum HOM05D006704 ORTHO05D008635 2.7e-94 349.4 306 56.2
Cpa.g.sc32.105 Carica papaya HOM05D006704 ORTHO05D008635 7.5e-92 341.3 230 69.1
Mapoly0047s0027 Marchantia polymorpha HOM05D006704 ORTHO05D008635 1.7e-88 330.1 298 53.4
AagrBONN_evm.TU.Sc2ySwM_228.5549 Anthoceros agrestis HOM05D006704 ORTHO05D008635 1.5e-84 317.0 298 54.0
Actinidia07237 Actinidia chinensis HOM05D006704 ORTHO05D008635 2.7e-81 306.2 297 53.5
SMO079G0003 Selaginella moellendorffii HOM05D006704 ORTHO05D008635 2.7e-81 306.2 293 51.9
SMO200G0095 Selaginella moellendorffii HOM05D006704 ORTHO05D008635 1.0e-80 304.3 293 51.5
Hma1.2p1_0305F.1_g119660 Hydrangea macrophylla HOM05D006704 ORTHO05D008635 4.0e-69 265.8 192 66.1
TWI79G0085 Tripterygium wilfordii HOM05D006704 ORTHO05D008635 1.3e-35 154.5 99 64.6
MD03G1142200 Malus domestica HOM05D006704 ORTHO05D008635 1.2e-28 131.3 80 71.2
VMungo0464G0466 Vigna mungo HOM05D006704 ORTHO05D000044 6.9e-21 105.5 57 78.9
Actinidia24205 Actinidia chinensis HOM05D006704 ORTHO05D008635 1.2e-20 104.8 65 66.2
Cpa.g.sc32.104 Carica papaya HOM05D006704 ORTHO05D008635 1.5e-20 104.4 77 59.7
Oeu031485.1 Olea europaea HOM05D006704 ORTHO05D008635 7.6e-20 102.1 66 68.2
Migut.D01870 Erythranthe guttata HOM05D006704 ORTHO05D008635 3.9e-16 89.7 71 57.7
QL02p006829 Quercus lobata HOM05D006704 ORTHO05D004198 6.9e-13 79.0 53 64.2
MD11G1162700 Malus domestica HOM05D006704 ORTHO05D008635 3.6e-09 66.6 128 32.0


User provided reference genes

Program Settings