Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.1e-50 203.0 98 100.0
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 8.5e-24 113.6 63 84.1
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 7.2e-23 110.5 87 63.2
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 9.7e-20 100.1 87 54.0
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 3.7e-19 98.2 98 55.1
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.4e-18 96.3 97 53.6
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.1e-18 95.1 87 54.0
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 3.1e-18 95.1 96 53.1
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 7.0e-18 94.0 94 48.9
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 7.0e-18 94.0 96 53.1
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.6e-17 92.8 86 53.5
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 4.5e-17 91.3 96 51.0
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.7e-16 89.4 87 54.0
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.7e-16 89.4 87 54.0
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 2.9e-16 88.6 87 51.7
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 3.8e-16 88.2 94 51.1
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 1.1e-15 86.7 87 51.7
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.2e-15 85.1 87 48.3
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 3.2e-15 85.1 90 48.9
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 3.2e-15 85.1 94 50.0
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.5e-15 84.3 97 48.5
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 7.2e-15 84.0 87 50.6
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 9.4e-15 83.6 87 49.4
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 9.4e-15 83.6 96 46.9
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 1.2e-14 83.2 88 50.0
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 1.2e-14 83.2 96 46.9
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.1e-14 82.4 96 44.8
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 2.7e-14 82.0 87 48.3
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 3.6e-14 81.6 96 45.8
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 4.7e-14 81.3 96 45.8
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 4.7e-14 81.3 87 49.4
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.7e-14 81.3 86 50.0
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.7e-14 81.3 95 47.4
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 8.0e-14 80.5 89 52.8
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 8.0e-14 80.5 88 46.6
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 8.0e-14 80.5 92 46.7
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 8.0e-14 80.5 86 46.5
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.0e-13 80.1 87 49.4
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.4e-13 79.7 86 48.8
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.4e-13 79.7 92 53.3
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.8e-13 79.3 95 47.4
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 2.3e-13 79.0 87 48.3
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 3.0e-13 78.6 92 47.8
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 3.0e-13 78.6 93 47.3
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.0e-13 78.2 92 45.7
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 4.0e-13 78.2 86 50.0
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 6.8e-13 77.4 92 45.7
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 1.5e-12 76.3 89 47.2
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.5e-12 76.3 92 44.6
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 1.5e-12 76.3 102 44.1
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.5e-12 76.3 87 44.8
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 2.0e-12 75.9 85 49.4
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.6e-12 75.5 87 44.8
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 2.6e-12 75.5 95 49.5
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.4e-12 75.1 90 50.0
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 3.4e-12 75.1 84 46.4
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.4e-12 75.1 87 44.8
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 3.4e-12 75.1 86 47.7
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.4e-12 74.7 93 46.2
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 5.7e-12 74.3 77 48.1
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 5.7e-12 74.3 86 50.0
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 5.7e-12 74.3 86 50.0
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 5.7e-12 74.3 99 43.4
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 7.5e-12 73.9 92 44.6
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 7.5e-12 73.9 89 48.3
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 9.8e-12 73.6 85 47.1
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.3e-11 73.2 98 48.0
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.3e-11 73.2 60 60.0
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 2.2e-11 72.4 87 48.3
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 2.2e-11 72.4 89 42.7
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 2.2e-11 72.4 89 42.7
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 2.2e-11 72.4 85 48.2
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.2e-11 72.4 90 46.7
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.2e-11 72.4 61 55.7
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 2.8e-11 72.0 84 45.2
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 2.8e-11 72.0 85 44.7
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 3.7e-11 71.6 95 43.2
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 3.7e-11 71.6 94 46.8
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 4.8e-11 71.2 98 49.0
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 4.8e-11 71.2 61 59.0
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 6.3e-11 70.9 87 43.7
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 8.3e-11 70.5 98 45.9
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 1.1e-10 70.1 87 47.1
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 1.1e-10 70.1 97 42.3
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.1e-10 70.1 84 42.9
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.4e-10 69.7 98 44.9
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 1.8e-10 69.3 85 47.1
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.8e-10 69.3 90 44.4
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 1.8e-10 69.3 93 46.2
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 1.8e-10 69.3 93 46.2
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 1.8e-10 69.3 101 40.6
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 2.4e-10 68.9 89 46.1
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 3.1e-10 68.6 95 44.2
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 3.1e-10 68.6 85 44.7
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.1e-10 68.2 94 39.4
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 4.1e-10 68.2 99 43.4
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 5.4e-10 67.8 94 39.4
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 5.4e-10 67.8 62 53.2
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.4e-10 67.8 94 39.4
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 7.0e-10 67.4 94 43.6
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 7.0e-10 67.4 94 43.6
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 7.0e-10 67.4 94 42.6
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 1.2e-09 66.6 86 44.2
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 1.6e-09 66.2 81 46.9
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.6e-09 66.2 59 52.5
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.6e-09 66.2 94 39.4
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.6e-09 66.2 93 39.8
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.0e-09 65.9 95 41.1
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 3.5e-09 65.1 90 40.0
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 3.5e-09 65.1 92 40.2
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 4.5e-09 64.7 95 41.1
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 4.5e-09 64.7 90 38.9
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 5.9e-09 64.3 54 59.3
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 5.9e-09 64.3 94 42.6
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.9e-09 64.3 94 39.4
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 7.7e-09 63.9 74 48.6
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 7.7e-09 63.9 87 42.5
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 7.7e-09 63.9 93 40.9
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 1.0e-08 63.5 86 48.8
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 1.0e-08 63.5 110 39.1
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 1.0e-08 63.5 90 45.6
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 1.3e-08 63.2 92 40.2
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.7e-08 62.8 81 42.0
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 1.7e-08 62.8 96 41.7
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 1.7e-08 62.8 98 44.9
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.7e-08 62.8 94 39.4
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 2.2e-08 62.4 96 42.7
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 2.9e-08 62.0 91 40.7
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 2.9e-08 62.0 95 38.9
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.9e-08 62.0 91 37.4
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 3.8e-08 61.6 62 51.6
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 5.0e-08 61.2 87 46.0
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 5.0e-08 61.2 67 49.3
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 5.0e-08 61.2 97 40.2
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 6.5e-08 60.8 99 38.4
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 6.5e-08 60.8 99 38.4
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 6.5e-08 60.8 89 37.1
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 8.5e-08 60.5 92 37.0
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 8.5e-08 60.5 94 38.3
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 1.1e-07 60.1 100 37.0
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 1.1e-07 60.1 100 37.0
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.1e-07 60.1 92 38.0
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-07 60.1 92 38.0
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.1e-07 60.1 86 38.4
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 1.5e-07 59.7 94 37.2
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.9e-07 59.3 91 41.8
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 1.9e-07 59.3 86 40.7
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 2.5e-07 58.9 36 66.7
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.5e-07 58.9 92 34.8
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.5e-07 58.9 92 34.8
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.5e-07 58.9 98 39.8
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 3.2e-07 58.5 98 37.8
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.2e-07 58.5 42 64.3
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 3.2e-07 58.5 91 37.4
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 3.2e-07 58.5 91 41.8
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.2e-07 58.2 92 38.0
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 4.2e-07 58.2 89 42.7
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 4.2e-07 58.2 74 44.6
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 4.2e-07 58.2 90 33.3
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.5e-07 57.8 38 60.5
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 5.5e-07 57.8 91 36.3
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 5.5e-07 57.8 88 44.3
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 9.4e-07 57.0 60 50.0
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 9.4e-07 57.0 36 69.4
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 1.2e-06 56.6 98 33.7
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.2e-06 56.6 89 39.3
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 1.6e-06 56.2 97 38.1
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 2.1e-06 55.8 91 35.2
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 3.6e-06 55.1 81 40.7
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 4.7e-06 54.7 58 48.3
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 4.7e-06 54.7 33 72.7
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 6.1e-06 54.3 96 39.6
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 6.1e-06 54.3 82 39.0
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 8.0e-06 53.9 85 42.4
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 8.0e-06 53.9 92 35.9


User provided reference genes

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